Wall clock time and date at job start Tue Mar 31 2020 21:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99766 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47323 * 179.97438 * 8 6 5 10 10 C 1.76189 * 100.00240 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00119 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00108 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99988 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00027 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 59.99844 * 14 12 10 16 16 H 1.48498 * 109.46774 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46771 * 299.99352 * 14 12 10 18 18 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 19 19 C 1.38719 * 119.99968 * 275.00092 * 18 2 1 20 20 N 1.32508 * 119.55287 * 0.02562 * 19 18 2 21 21 C 1.31674 * 121.80862 * 180.02562 * 20 19 18 22 22 C 1.39561 * 120.68106 * 359.97438 * 21 20 19 23 23 C 1.43199 * 120.47730 * 179.97438 * 22 21 20 24 24 N 7.49837 * 98.28106 * 68.14941 * 2 1 3 25 25 C 1.40369 * 119.04512 * 359.97438 * 22 21 20 26 26 C 1.38060 * 118.35185 * 359.73064 * 25 22 21 27 27 F 1.35093 * 120.39456 * 180.28451 * 26 25 22 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 32 32 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 33 33 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 34 34 H 1.08997 * 109.47281 * 299.99965 * 8 6 5 35 35 H 1.09000 * 109.47293 * 59.99738 * 8 6 5 36 36 H 0.97002 * 120.00048 * 179.97438 * 13 12 10 37 37 H 0.97001 * 119.99547 * 95.00125 * 18 2 1 38 38 H 1.08002 * 119.66150 * 180.02562 * 21 20 19 39 39 H 1.07993 * 120.82437 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5698 -1.8847 -3.1392 8 6 5.6749 -1.5367 -2.1308 9 16 6.2782 -2.3912 -3.6079 10 6 8.0099 -2.3782 -3.2832 11 1 8.3862 -1.9249 -2.3780 12 6 8.8905 -2.9504 -4.1908 13 7 8.4318 -3.5033 -5.2937 14 14 10.7264 -2.9372 -3.8462 15 1 10.9973 -3.6611 -2.5782 16 1 11.4441 -3.6054 -4.9613 17 1 11.1973 -1.5340 -3.7255 18 7 2.0184 -0.6906 1.1961 19 6 2.1509 0.0014 2.3911 20 7 1.8327 1.2867 2.4407 21 6 1.9417 1.9863 3.5509 22 6 2.4010 1.3901 4.7262 23 6 2.5184 2.1552 5.9309 24 7 2.6100 2.7617 6.8871 25 6 2.7462 0.0296 4.7103 26 6 2.6107 -0.6674 3.5263 27 9 2.9255 -1.9798 3.4658 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2953 32 1 1.7516 -0.1582 -2.1371 33 1 3.9824 -0.4621 -0.4320 34 1 6.1093 -0.5380 -2.0856 35 1 5.9637 -2.0990 -1.2428 36 1 9.0473 -3.9029 -5.9281 37 1 2.2491 -1.6318 1.1525 38 1 1.6721 3.0322 3.5522 39 1 3.1044 -0.4609 5.6032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097677218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:02 Heat of formation + Delta-G solvation = -13.884885 kcal Electronic energy + Delta-G solvation = -25020.571006 eV Core-core repulsion = 21004.237260 eV Total energy + Delta-G solvation = -4016.333746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.37794 -40.91809 -39.42207 -37.79647 -36.77534 -34.31522 -32.91040 -32.45584 -32.28019 -29.80462 -29.37058 -26.12184 -25.43213 -24.55823 -24.43563 -21.49707 -20.42807 -19.83191 -18.90265 -18.05003 -17.78147 -16.74699 -16.50000 -16.31279 -16.26951 -15.79434 -15.18479 -14.94972 -14.82681 -14.65342 -14.21230 -14.01112 -13.95152 -13.80740 -13.49521 -13.40750 -13.18994 -13.01517 -12.97350 -12.75987 -12.58104 -12.30097 -11.85559 -11.41994 -11.07376 -11.05782 -10.90631 -10.78688 -10.33870 -10.30553 -9.85676 -9.50742 -9.10018 -9.02730 -8.34301 -8.28198 -6.53544 -6.24150 -3.95185 0.11517 0.44135 2.17911 2.37121 2.43670 2.95720 3.00741 3.21880 3.25409 3.26495 3.28345 3.30731 3.53335 3.64166 3.73096 4.11727 4.17970 4.27035 4.35047 4.71290 4.77904 4.86463 5.05821 5.07916 5.11030 5.22607 5.25083 5.37254 5.43980 5.51994 5.68154 5.76009 5.82721 5.85716 6.08875 6.35186 6.47315 6.59633 7.02717 7.37154 7.55952 7.57794 8.32394 8.50558 9.21149 10.83164 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.002265 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.177603 B =12357.345130 C =13771.375858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.103 0.897 4 C 0.111 3.889 5 N -0.741 5.741 6 C 0.533 3.467 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.700 5.700 19 C 0.415 3.585 20 N -0.515 5.515 21 C 0.205 3.795 22 C -0.127 4.127 23 C 0.265 3.735 24 N -0.417 5.417 25 C -0.018 4.018 26 C -0.019 4.019 27 F -0.126 7.126 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.418 0.582 38 H 0.174 0.826 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.737 9.253 18.646 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.121 0.879 4 C -0.014 4.014 5 N -0.396 5.396 6 C 0.319 3.681 7 O -0.389 6.389 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.331 5.331 19 C 0.174 3.826 20 N -0.232 5.232 21 C 0.042 3.958 22 C -0.136 4.136 23 C -0.051 4.051 24 N -0.093 5.093 25 C -0.046 4.046 26 C -0.046 4.046 27 F -0.105 7.105 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.256 0.744 38 H 0.191 0.809 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.929 9.726 17.359 26.784 hybrid contribution 2.552 -0.591 2.089 3.351 sum -15.377 9.135 19.448 26.422 Atomic orbital electron populations 1.22123 0.93830 1.02748 1.03218 1.21366 0.95040 0.97848 0.82298 0.87871 1.21650 0.81261 1.01458 0.97050 1.45997 1.06715 1.62172 1.24723 1.20325 0.89552 0.76670 0.81561 1.90712 1.69853 1.45876 1.32467 1.23532 0.93440 1.05729 1.07755 1.85385 1.04648 1.72982 1.20213 1.22818 0.91501 1.44445 1.09722 0.90982 1.24991 0.99607 0.94507 0.94451 1.70002 1.35548 1.35325 1.09380 0.86224 0.82739 0.78491 0.78053 1.19928 1.20792 1.19930 1.44903 1.68594 1.13093 1.06474 1.18615 0.89222 0.88904 0.85830 1.67445 1.22813 1.04597 1.28375 1.22701 0.88682 0.99524 0.84858 1.16453 1.14183 0.92576 0.90433 1.25186 0.93613 0.93649 0.92611 1.81311 1.09263 1.08402 1.10337 1.21362 0.93558 0.92333 0.97345 1.17660 1.11978 0.80403 0.94533 1.91545 1.91211 1.31001 1.96738 0.91409 0.92120 0.90867 0.90900 0.89641 0.76742 0.89218 0.89250 0.92100 0.74355 0.80873 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.50 37.16 0.35 -0.53 16 2 C 0.14 0.89 2.74 -67.93 -0.19 0.70 16 3 H 0.10 0.70 7.53 -51.93 -0.39 0.31 16 4 C 0.11 1.00 5.23 -4.04 -0.02 0.98 16 5 N -0.74 -8.54 5.39 -60.29 -0.32 -8.86 16 6 C 0.53 9.22 7.85 -10.99 -0.09 9.13 16 7 O -0.52 -11.02 15.86 5.56 0.09 -10.93 16 8 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 14 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 N -0.70 -4.46 4.65 -53.87 -0.25 -4.71 16 19 C 0.41 2.77 7.46 -155.05 -1.16 1.61 16 20 N -0.52 -3.24 9.15 -12.06 -0.11 -3.35 16 21 C 0.20 0.98 10.91 -17.13 -0.19 0.79 16 22 C -0.13 -0.68 5.75 -106.68 -0.61 -1.29 16 23 C 0.27 1.90 15.37 -22.47 -0.35 1.56 16 24 N -0.42 -4.13 18.54 41.84 0.78 -3.35 16 25 C -0.02 -0.10 9.88 -38.85 -0.38 -0.48 16 26 C -0.02 -0.13 7.34 -39.16 -0.29 -0.41 16 27 F -0.13 -0.99 16.62 2.25 0.04 -0.95 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.40 3.79 8.14 -40.82 -0.33 3.45 16 34 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 35 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.42 2.69 8.05 -40.82 -0.33 2.36 16 38 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -34.96 370.99 -7.59 -42.55 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.40 Total: 0.23 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.49 Total: -3.47 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.82 Total: -45.40 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.96 -7.59 -42.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097677218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.663 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds