Wall clock time and date at job start Tue Mar 31 2020 21:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99766 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.47323 * 179.97438 * 8 6 5 10 10 C 1.76189 * 100.00240 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00119 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00108 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99988 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00027 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 59.99844 * 14 12 10 16 16 H 1.48498 * 109.46774 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46771 * 299.99352 * 14 12 10 18 18 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 19 19 C 1.38719 * 119.99968 * 275.00092 * 18 2 1 20 20 N 1.32508 * 119.55287 * 0.02562 * 19 18 2 21 21 C 1.31674 * 121.80862 * 180.02562 * 20 19 18 22 22 C 1.39561 * 120.68106 * 359.97438 * 21 20 19 23 23 C 1.43199 * 120.47730 * 179.97438 * 22 21 20 24 24 N 7.49837 * 98.28106 * 68.14941 * 2 1 3 25 25 C 1.40369 * 119.04512 * 359.97438 * 22 21 20 26 26 C 1.38060 * 118.35185 * 359.73064 * 25 22 21 27 27 F 1.35093 * 120.39456 * 180.28451 * 26 25 22 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 32 32 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 33 33 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 34 34 H 1.08997 * 109.47281 * 299.99965 * 8 6 5 35 35 H 1.09000 * 109.47293 * 59.99738 * 8 6 5 36 36 H 0.97002 * 120.00048 * 179.97438 * 13 12 10 37 37 H 0.97001 * 119.99547 * 95.00125 * 18 2 1 38 38 H 1.08002 * 119.66150 * 180.02562 * 21 20 19 39 39 H 1.07993 * 120.82437 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5698 -1.8847 -3.1392 8 6 5.6749 -1.5367 -2.1308 9 16 6.2782 -2.3912 -3.6079 10 6 8.0099 -2.3782 -3.2832 11 1 8.3862 -1.9249 -2.3780 12 6 8.8905 -2.9504 -4.1908 13 7 8.4318 -3.5033 -5.2937 14 14 10.7264 -2.9372 -3.8462 15 1 10.9973 -3.6611 -2.5782 16 1 11.4441 -3.6054 -4.9613 17 1 11.1973 -1.5340 -3.7255 18 7 2.0184 -0.6906 1.1961 19 6 2.1509 0.0014 2.3911 20 7 1.8327 1.2867 2.4407 21 6 1.9417 1.9863 3.5509 22 6 2.4010 1.3901 4.7262 23 6 2.5184 2.1552 5.9309 24 7 2.6100 2.7617 6.8871 25 6 2.7462 0.0296 4.7103 26 6 2.6107 -0.6674 3.5263 27 9 2.9255 -1.9798 3.4658 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2953 32 1 1.7516 -0.1582 -2.1371 33 1 3.9824 -0.4621 -0.4320 34 1 6.1093 -0.5380 -2.0856 35 1 5.9637 -2.0990 -1.2428 36 1 9.0473 -3.9029 -5.9281 37 1 2.2491 -1.6318 1.1525 38 1 1.6721 3.0322 3.5522 39 1 3.1044 -0.4609 5.6032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097677218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:02 Heat of formation + Delta-G solvation = -37.609646 kcal Electronic energy + Delta-G solvation = -25021.599789 eV Core-core repulsion = 21004.237260 eV Total energy + Delta-G solvation = -4017.362529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.90158 -41.41081 -40.63763 -38.51639 -37.45099 -35.27134 -34.57787 -33.45550 -32.95179 -30.93774 -30.10459 -27.72926 -26.79527 -25.02848 -24.96071 -22.10321 -21.72224 -20.34888 -19.88998 -19.32089 -18.49303 -17.75934 -17.38542 -17.16048 -16.95507 -16.87174 -16.69484 -16.02577 -15.87434 -15.66647 -15.18858 -14.83340 -14.66771 -14.52258 -14.46449 -14.26294 -14.15198 -14.05719 -13.70540 -13.59414 -13.29593 -13.22112 -13.16461 -12.86412 -12.80617 -12.61645 -12.02418 -11.73300 -11.41193 -11.12593 -10.96682 -10.80250 -10.76524 -10.27513 -10.14989 -8.84010 -8.65624 -8.34134 -6.11808 -0.35182 0.01464 1.27274 1.43961 1.47037 1.56581 1.60885 1.61546 1.87066 1.90621 2.26209 2.30610 2.77848 2.78952 2.99927 3.06385 3.29831 3.32834 3.62384 3.74479 3.88709 3.97977 4.12903 4.29657 4.32294 4.33811 4.51766 4.62766 4.65389 4.77944 4.84189 4.91407 5.00313 5.29590 5.35274 5.42132 5.43541 5.87726 6.10070 6.19991 6.44921 6.47729 6.89828 7.07292 7.22147 8.74616 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.002265 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.177603 B =12357.345130 C =13771.375858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.107 0.893 4 C 0.110 3.890 5 N -0.713 5.713 6 C 0.536 3.464 7 O -0.562 6.562 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.547 4.547 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.262 1.262 18 N -0.701 5.701 19 C 0.412 3.588 20 N -0.524 5.524 21 C 0.216 3.784 22 C -0.127 4.127 23 C 0.293 3.707 24 N -0.467 5.467 25 C -0.008 4.008 26 C -0.033 4.033 27 F -0.136 7.136 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.418 0.582 38 H 0.200 0.800 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.553 10.511 20.451 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.125 0.875 4 C -0.014 4.014 5 N -0.367 5.367 6 C 0.322 3.678 7 O -0.440 6.440 8 C -0.283 4.283 9 S 0.079 5.921 10 C -0.695 4.695 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.187 1.187 18 N -0.332 5.332 19 C 0.172 3.828 20 N -0.241 5.241 21 C 0.053 3.947 22 C -0.137 4.137 23 C -0.022 4.022 24 N -0.143 5.143 25 C -0.036 4.036 26 C -0.060 4.060 27 F -0.115 7.115 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.217 0.783 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.765 11.015 19.221 28.397 hybrid contribution 2.367 -0.928 1.606 3.007 sum -15.398 10.087 20.827 27.796 Atomic orbital electron populations 1.22080 0.92796 1.02869 1.03644 1.21217 0.95573 0.97327 0.80982 0.87504 1.21816 0.79164 1.01774 0.98603 1.45710 1.07862 1.59840 1.23276 1.19976 0.88734 0.76995 0.82106 1.90703 1.70327 1.48365 1.34615 1.23380 0.95041 1.05678 1.04174 1.85537 1.05691 1.74994 1.25871 1.23165 0.91811 1.44412 1.10123 0.90010 1.26107 1.05123 0.93840 0.94055 1.70168 1.37431 1.36449 1.10603 0.85031 0.75881 0.79054 0.78210 1.18710 1.20428 1.18707 1.44887 1.68736 1.13089 1.06473 1.18695 0.89136 0.89167 0.85786 1.67525 1.23264 1.04408 1.28889 1.23112 0.87099 1.00434 0.84040 1.16403 1.14882 0.92423 0.89952 1.25277 0.92131 0.92580 0.92170 1.81347 1.11147 1.10010 1.11810 1.21513 0.92373 0.92231 0.97493 1.17728 1.13119 0.80165 0.94983 1.91521 1.91453 1.31707 1.96808 0.91294 0.92192 0.90082 0.91191 0.89794 0.75098 0.87432 0.87399 0.91998 0.74397 0.78332 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.50 71.98 0.68 -0.69 16 2 C 0.15 1.63 2.74 44.99 0.12 1.75 16 3 H 0.11 1.14 7.53 -2.39 -0.02 1.12 16 4 C 0.11 1.83 5.23 86.38 0.45 2.28 16 5 N -0.71 -15.15 5.39 -463.05 -2.49 -17.65 16 6 C 0.54 18.16 7.85 87.66 0.69 18.84 16 7 O -0.56 -24.34 15.86 -3.02 -0.05 -24.38 16 8 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 9 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 10 C -0.55 -30.79 9.50 67.95 0.65 -30.14 16 11 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 12 C 0.01 0.77 5.49 84.86 0.47 1.24 16 13 N -0.91 -55.33 13.22 21.65 0.29 -55.04 16 14 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 15 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 18 N -0.70 -7.51 4.65 -324.34 -1.51 -9.02 16 19 C 0.41 4.59 7.46 133.23 0.99 5.58 16 20 N -0.52 -5.17 9.15 -192.06 -1.76 -6.93 16 21 C 0.22 1.45 10.91 85.04 0.93 2.38 16 22 C -0.13 -1.06 5.75 -21.20 -0.12 -1.18 16 23 C 0.29 3.71 15.37 88.33 1.36 5.07 16 24 N -0.47 -8.79 18.54 19.00 0.35 -8.44 16 25 C -0.01 -0.07 9.88 22.75 0.22 0.16 16 26 C -0.03 -0.38 7.34 22.54 0.17 -0.21 16 27 F -0.14 -1.94 16.62 44.97 0.75 -1.19 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.41 6.74 8.14 -92.71 -0.75 5.99 16 34 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 35 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.42 4.65 8.05 -92.71 -0.75 3.91 16 38 H 0.20 0.25 8.06 -2.91 -0.02 0.22 16 39 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -77.79 370.99 3.11 -74.67 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.37 Total: 11.50 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 7.04 Total: 0.55 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -5.12 Total: -97.08 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.75 Total: -1.19 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -77.79 3.11 -74.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097677218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.065 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds