Wall clock time and date at job start Tue Mar 31 2020 21:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46850 * 90.00589 * 14 12 10 16 16 H 1.48498 * 109.47329 * 210.00016 * 14 12 10 17 17 H 1.48499 * 109.47220 * 330.01003 * 14 12 10 18 18 N 1.46494 * 109.47171 * 240.00392 * 2 1 3 19 19 C 1.38717 * 120.00620 * 84.99702 * 18 2 1 20 20 N 1.32516 * 119.54633 * 0.02562 * 19 18 2 21 21 C 1.31676 * 121.80431 * 180.02562 * 20 19 18 22 22 C 1.39564 * 120.68526 * 359.97438 * 21 20 19 23 23 C 1.43197 * 120.48265 * 180.02562 * 22 21 20 24 24 N 7.49838 * 98.27882 * 291.85314 * 2 1 3 25 25 C 1.40365 * 119.04272 * 0.02562 * 22 21 20 26 26 C 1.38060 * 118.35219 * 359.72672 * 25 22 21 27 27 F 1.35100 * 120.39396 * 180.28576 * 26 25 22 28 28 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 29 29 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 30 30 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 32 32 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 35 35 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 36 36 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 37 37 H 0.97009 * 119.99912 * 264.99313 * 18 2 1 38 38 H 1.08002 * 119.65807 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.82565 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 16 6.2799 -2.3742 3.6169 10 6 8.0121 -2.3560 3.2948 11 1 8.3883 -1.9034 2.3892 12 6 8.8932 -2.9225 4.2054 13 7 8.4348 -3.4736 5.3094 14 14 10.7296 -2.9039 3.8637 15 1 11.3264 -1.6685 4.4321 16 1 11.3618 -4.0925 4.4903 17 1 10.9606 -2.9356 2.3971 18 7 2.0184 -0.6905 -1.1962 19 6 2.1508 0.0015 -2.3911 20 7 1.8336 1.2871 -2.4404 21 6 1.9417 1.9865 -3.5508 22 6 2.3999 1.3901 -4.7264 23 6 2.5163 2.1549 -5.9315 24 7 2.6097 2.7620 -6.8870 25 6 2.7450 0.0296 -4.7106 26 6 2.6213 -0.6644 -3.5236 27 9 2.9475 -1.9739 -3.4603 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 1.2952 32 1 1.7517 -0.1583 2.1369 33 1 3.9825 -0.4620 0.4319 34 1 5.9681 -2.0901 1.2503 35 1 6.1069 -0.5261 2.0886 36 1 9.0506 -3.8698 5.9455 37 1 2.2492 -1.6317 -1.1526 38 1 1.6737 3.0328 -3.5516 39 1 3.1032 -0.4609 -5.6037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097677225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:06 Heat of formation + Delta-G solvation = -13.940836 kcal Electronic energy + Delta-G solvation = -25020.834020 eV Core-core repulsion = 21004.497848 eV Total energy + Delta-G solvation = -4016.336172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.37633 -40.91764 -39.42112 -37.79668 -36.77612 -34.31512 -32.91030 -32.45603 -32.28030 -29.80440 -29.37050 -26.12268 -25.43408 -24.55799 -24.43554 -21.49770 -20.42787 -19.83180 -18.90243 -18.05018 -17.78254 -16.74572 -16.49984 -16.31280 -16.26998 -15.79452 -15.18491 -14.94881 -14.82772 -14.65375 -14.21400 -14.01062 -13.95208 -13.80767 -13.49538 -13.40730 -13.19056 -13.01410 -12.97394 -12.76037 -12.58218 -12.30239 -11.85484 -11.42106 -11.08548 -11.05152 -10.90403 -10.78064 -10.34280 -10.30326 -9.84840 -9.50739 -9.10612 -9.02873 -8.34283 -8.27866 -6.53574 -6.24444 -3.95339 0.11514 0.44133 2.17936 2.37104 2.43680 2.95654 3.00768 3.20639 3.25600 3.26375 3.29223 3.31070 3.53360 3.64230 3.73098 4.11728 4.17730 4.27039 4.35047 4.71207 4.77945 4.86425 5.05811 5.07883 5.10868 5.22599 5.25126 5.37216 5.43909 5.51948 5.68121 5.76010 5.82713 5.85729 6.08889 6.35195 6.47350 6.59585 7.02716 7.37120 7.56053 7.57894 8.32507 8.50550 9.21045 10.82949 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002265 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.716239 B =12359.410814 C =13773.449884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.103 0.897 4 C 0.111 3.889 5 N -0.741 5.741 6 C 0.533 3.467 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.700 5.700 19 C 0.415 3.585 20 N -0.515 5.515 21 C 0.205 3.795 22 C -0.127 4.127 23 C 0.265 3.735 24 N -0.417 5.417 25 C -0.018 4.018 26 C -0.019 4.019 27 F -0.126 7.126 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.418 0.582 38 H 0.174 0.826 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 9.183 -18.699 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.121 0.879 4 C -0.014 4.014 5 N -0.396 5.396 6 C 0.319 3.681 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.331 5.331 19 C 0.174 3.826 20 N -0.232 5.232 21 C 0.042 3.958 22 C -0.136 4.136 23 C -0.051 4.051 24 N -0.093 5.093 25 C -0.046 4.046 26 C -0.046 4.046 27 F -0.105 7.105 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.256 0.744 38 H 0.191 0.809 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.944 9.656 -17.416 26.806 hybrid contribution 2.546 -0.586 -2.075 3.336 sum -15.398 9.070 -19.491 26.444 Atomic orbital electron populations 1.22123 0.93830 1.02747 1.03220 1.21365 0.95043 0.97847 0.82296 0.87873 1.21647 0.81263 1.01458 0.97049 1.45998 1.06695 1.62349 1.24563 1.20329 0.89559 0.76670 0.81554 1.90714 1.69886 1.45798 1.32515 1.23532 0.93429 1.05720 1.07764 1.85391 1.04619 1.73322 1.19941 1.22859 0.91437 1.44520 1.09585 0.90929 1.24997 0.99627 0.94511 0.94463 1.70014 1.35421 1.35539 1.09280 0.86165 0.82874 0.77875 0.78569 1.20254 1.20736 1.19691 1.44903 1.68601 1.13099 1.06457 1.18615 0.89205 0.88903 0.85854 1.67451 1.22893 1.04549 1.28335 1.22703 0.88662 0.99541 0.84862 1.16452 1.14203 0.92561 0.90429 1.25183 0.93612 0.93650 0.92613 1.81309 1.09262 1.08388 1.10352 1.21361 0.93590 0.92351 0.97297 1.17659 1.11789 0.80610 0.94517 1.91547 1.90932 1.31292 1.96724 0.90862 0.91414 0.92121 0.90896 0.89642 0.76741 0.89245 0.89220 0.92160 0.74353 0.80874 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.50 37.16 0.35 -0.53 16 2 C 0.14 0.89 2.74 -67.93 -0.19 0.70 16 3 H 0.10 0.70 7.52 -51.93 -0.39 0.31 16 4 C 0.11 1.00 5.23 -4.04 -0.02 0.98 16 5 N -0.74 -8.54 5.39 -60.30 -0.32 -8.86 16 6 C 0.53 9.22 7.85 -10.98 -0.09 9.13 16 7 O -0.52 -11.02 15.86 5.55 0.09 -10.93 16 8 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -15.04 9.50 30.94 0.29 -14.74 16 11 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 14 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 18 N -0.70 -4.46 4.65 -53.87 -0.25 -4.71 16 19 C 0.41 2.77 7.46 -155.04 -1.16 1.61 16 20 N -0.52 -3.24 9.15 -12.06 -0.11 -3.35 16 21 C 0.20 0.98 10.91 -17.12 -0.19 0.79 16 22 C -0.13 -0.68 5.75 -106.68 -0.61 -1.29 16 23 C 0.27 1.90 15.37 -22.47 -0.35 1.56 16 24 N -0.42 -4.13 18.54 41.84 0.78 -3.35 16 25 C -0.02 -0.10 9.88 -38.85 -0.38 -0.48 16 26 C -0.02 -0.13 7.34 -39.16 -0.29 -0.41 16 27 F -0.13 -0.99 16.62 2.25 0.04 -0.95 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 3.79 8.14 -40.82 -0.33 3.46 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.42 2.69 8.05 -40.82 -0.33 2.36 16 38 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -34.98 370.99 -7.59 -42.57 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.40 Total: 0.19 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.49 Total: -3.45 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.82 Total: -45.40 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.98 -7.59 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097677225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.633 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds