Wall clock time and date at job start Tue Mar 31 2020 21:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46850 * 90.00589 * 14 12 10 16 16 H 1.48498 * 109.47329 * 210.00016 * 14 12 10 17 17 H 1.48499 * 109.47220 * 330.01003 * 14 12 10 18 18 N 1.46494 * 109.47171 * 240.00392 * 2 1 3 19 19 C 1.38717 * 120.00620 * 84.99702 * 18 2 1 20 20 N 1.32516 * 119.54633 * 0.02562 * 19 18 2 21 21 C 1.31676 * 121.80431 * 180.02562 * 20 19 18 22 22 C 1.39564 * 120.68526 * 359.97438 * 21 20 19 23 23 C 1.43197 * 120.48265 * 180.02562 * 22 21 20 24 24 N 7.49838 * 98.27882 * 291.85314 * 2 1 3 25 25 C 1.40365 * 119.04272 * 0.02562 * 22 21 20 26 26 C 1.38060 * 118.35219 * 359.72672 * 25 22 21 27 27 F 1.35100 * 120.39396 * 180.28576 * 26 25 22 28 28 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 29 29 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 30 30 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 32 32 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 35 35 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 36 36 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 37 37 H 0.97009 * 119.99912 * 264.99313 * 18 2 1 38 38 H 1.08002 * 119.65807 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.82565 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 16 6.2799 -2.3742 3.6169 10 6 8.0121 -2.3560 3.2948 11 1 8.3883 -1.9034 2.3892 12 6 8.8932 -2.9225 4.2054 13 7 8.4348 -3.4736 5.3094 14 14 10.7296 -2.9039 3.8637 15 1 11.3264 -1.6685 4.4321 16 1 11.3618 -4.0925 4.4903 17 1 10.9606 -2.9356 2.3971 18 7 2.0184 -0.6905 -1.1962 19 6 2.1508 0.0015 -2.3911 20 7 1.8336 1.2871 -2.4404 21 6 1.9417 1.9865 -3.5508 22 6 2.3999 1.3901 -4.7264 23 6 2.5163 2.1549 -5.9315 24 7 2.6097 2.7620 -6.8870 25 6 2.7450 0.0296 -4.7106 26 6 2.6213 -0.6644 -3.5236 27 9 2.9475 -1.9739 -3.4603 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 1.2952 32 1 1.7517 -0.1583 2.1369 33 1 3.9825 -0.4620 0.4319 34 1 5.9681 -2.0901 1.2503 35 1 6.1069 -0.5261 2.0886 36 1 9.0506 -3.8698 5.9455 37 1 2.2492 -1.6317 -1.1526 38 1 1.6737 3.0328 -3.5516 39 1 3.1032 -0.4609 -5.6037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097677225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:06 Heat of formation + Delta-G solvation = -37.687146 kcal Electronic energy + Delta-G solvation = -25021.863737 eV Core-core repulsion = 21004.497848 eV Total energy + Delta-G solvation = -4017.365889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90006 -41.41042 -40.63658 -38.51681 -37.45182 -35.27132 -34.57829 -33.45553 -32.95187 -30.93809 -30.10420 -27.73209 -26.79610 -25.02838 -24.96044 -22.10376 -21.72243 -20.34879 -19.89177 -19.32079 -18.49341 -17.75891 -17.38571 -17.16093 -16.95427 -16.87396 -16.69481 -16.02682 -15.87370 -15.66694 -15.18852 -14.83361 -14.66931 -14.52286 -14.46540 -14.26257 -14.15254 -14.05744 -13.70498 -13.59406 -13.29586 -13.22188 -13.16100 -12.88853 -12.80551 -12.60180 -12.02333 -11.71865 -11.40994 -11.13978 -10.96680 -10.80605 -10.76345 -10.27243 -10.14994 -8.83996 -8.65650 -8.34453 -6.11974 -0.35183 0.01461 1.27382 1.42514 1.47292 1.57505 1.60845 1.61562 1.87035 1.90636 2.26000 2.30516 2.77430 2.79358 2.99740 3.06420 3.29810 3.32724 3.62380 3.74482 3.88705 3.97921 4.12848 4.29628 4.32320 4.33751 4.51753 4.62765 4.65381 4.77941 4.84174 4.91441 5.00254 5.29594 5.35296 5.42349 5.43552 5.87750 6.10033 6.20138 6.44852 6.47730 6.89798 7.07175 7.22109 8.74574 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.002265 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.716239 B =12359.410814 C =13773.449884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.107 0.893 4 C 0.110 3.890 5 N -0.713 5.713 6 C 0.536 3.464 7 O -0.562 6.562 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.259 1.259 18 N -0.701 5.701 19 C 0.412 3.588 20 N -0.524 5.524 21 C 0.216 3.784 22 C -0.127 4.127 23 C 0.293 3.707 24 N -0.467 5.467 25 C -0.008 4.008 26 C -0.033 4.033 27 F -0.136 7.136 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.271 0.729 37 H 0.418 0.582 38 H 0.200 0.800 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.579 10.434 -20.502 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.125 0.875 4 C -0.014 4.014 5 N -0.367 5.367 6 C 0.322 3.678 7 O -0.440 6.440 8 C -0.283 4.283 9 S 0.079 5.921 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.183 1.183 18 N -0.332 5.332 19 C 0.172 3.828 20 N -0.241 5.241 21 C 0.053 3.947 22 C -0.137 4.137 23 C -0.022 4.022 24 N -0.143 5.143 25 C -0.036 4.036 26 C -0.060 4.060 27 F -0.115 7.115 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.217 0.783 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.787 10.937 -19.276 28.418 hybrid contribution 2.363 -0.920 -1.591 2.994 sum -15.424 10.017 -20.867 27.815 Atomic orbital electron populations 1.22079 0.92792 1.02872 1.03643 1.21216 0.95579 0.97323 0.80983 0.87512 1.21813 0.79164 1.01779 0.98599 1.45711 1.07843 1.60026 1.23107 1.19979 0.88740 0.76992 0.82103 1.90705 1.70357 1.48291 1.34659 1.23379 0.95031 1.05701 1.04155 1.85542 1.05653 1.75310 1.25615 1.23196 0.91746 1.44482 1.09970 0.90014 1.26112 1.05137 0.93847 0.94067 1.70175 1.37339 1.36657 1.10503 0.84973 0.75991 0.78100 0.79043 1.19337 1.20339 1.18259 1.44887 1.68744 1.13095 1.06455 1.18696 0.89119 0.89164 0.85811 1.67530 1.23346 1.04360 1.28849 1.23112 0.87078 1.00452 0.84046 1.16402 1.14902 0.92410 0.89946 1.25274 0.92130 0.92581 0.92171 1.81345 1.11146 1.09996 1.11826 1.21513 0.92399 0.92245 0.97448 1.17728 1.12924 0.80379 0.94969 1.91523 1.91176 1.31997 1.96795 0.90083 0.91298 0.92186 0.91177 0.89804 0.75099 0.87411 0.87422 0.92004 0.74393 0.78334 0.81280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.50 71.98 0.68 -0.69 16 2 C 0.15 1.63 2.74 44.99 0.12 1.75 16 3 H 0.11 1.14 7.52 -2.39 -0.02 1.12 16 4 C 0.11 1.83 5.23 86.38 0.45 2.28 16 5 N -0.71 -15.16 5.39 -463.07 -2.49 -17.65 16 6 C 0.54 18.16 7.85 87.66 0.69 18.85 16 7 O -0.56 -24.34 15.86 -3.04 -0.05 -24.38 16 8 C -0.13 -4.96 6.16 71.24 0.44 -4.53 16 9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.21 16 10 C -0.55 -30.72 9.50 67.96 0.65 -30.08 16 11 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 12 C 0.01 0.74 5.49 84.86 0.47 1.21 16 13 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 14 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 15 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 N -0.70 -7.51 4.65 -324.35 -1.51 -9.02 16 19 C 0.41 4.59 7.46 133.23 0.99 5.58 16 20 N -0.52 -5.17 9.15 -192.06 -1.76 -6.93 16 21 C 0.22 1.45 10.91 85.04 0.93 2.38 16 22 C -0.13 -1.06 5.75 -21.20 -0.12 -1.18 16 23 C 0.29 3.71 15.37 88.33 1.36 5.07 16 24 N -0.47 -8.79 18.54 19.00 0.35 -8.44 16 25 C -0.01 -0.07 9.88 22.75 0.22 0.16 16 26 C -0.03 -0.38 7.34 22.54 0.17 -0.21 16 27 F -0.14 -1.94 16.62 44.97 0.75 -1.19 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.41 6.75 8.14 -92.71 -0.75 6.00 16 34 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 35 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 37 H 0.42 4.65 8.05 -92.70 -0.75 3.90 16 38 H 0.20 0.25 8.06 -2.91 -0.02 0.22 16 39 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -77.82 370.99 3.11 -74.71 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -0.37 Total: 11.40 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 7.04 Total: 0.60 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -5.12 Total: -97.08 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.75 Total: -1.19 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.21 kcal Total: -77.82 3.11 -74.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097677225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.023 kcal (2) G-P(sol) polarization free energy of solvation -77.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds