Wall clock time and date at job start Tue Mar 31 2020 20:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48504 * 109.46962 * 89.99581 * 3 2 1 5 5 H 1.48504 * 109.46990 * 329.99775 * 3 2 1 6 6 H 1.48500 * 109.47287 * 209.99847 * 3 2 1 7 7 C 1.38810 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99934 * 20.97550 * 7 2 1 9 9 N 1.36936 * 120.00256 * 200.96992 * 7 2 1 10 10 C 1.50235 * 130.83434 * 10.02788 * 9 7 2 11 11 H 1.09001 * 115.85873 * 0.39466 * 10 9 7 12 12 C 1.55844 * 101.05157 * 234.00267 * 10 9 7 13 13 C 1.54226 * 103.56206 * 327.15101 * 12 10 9 14 14 C 1.50230 * 130.83719 * 190.36612 * 9 7 2 15 15 H 1.08998 * 115.86484 * 359.60955 * 14 9 7 16 16 C 1.55848 * 101.04899 * 233.93276 * 14 9 7 17 17 H 1.09004 * 110.62609 * 208.57177 * 16 14 9 18 18 N 1.46501 * 110.62589 * 85.55261 * 16 14 9 19 19 C 1.34774 * 119.99666 * 154.99935 * 18 16 14 20 20 O 1.21572 * 120.00597 * 0.02562 * 19 18 16 21 21 C 1.47727 * 119.99953 * 179.97438 * 19 18 16 22 22 C 1.39660 * 120.11166 * 359.73083 * 21 19 18 23 23 C 1.37837 * 119.90207 * 179.74052 * 22 21 19 24 24 C 1.38634 * 120.13715 * 0.50493 * 23 22 21 25 25 F 1.35095 * 119.88792 * 179.73868 * 24 23 22 26 26 C 1.38746 * 120.22536 * 359.77459 * 24 23 22 27 27 Cl 1.73599 * 119.95350 * 179.97438 * 26 24 23 28 28 C 1.37961 * 120.09495 * 359.96611 * 26 24 23 29 29 C 1.54849 * 103.44542 * 327.06281 * 16 14 9 30 30 H 0.97000 * 119.99970 * 174.92758 * 1 2 3 31 31 H 1.08993 * 110.62534 * 85.55411 * 12 10 9 32 32 H 1.08995 * 110.62888 * 208.42179 * 12 10 9 33 33 H 1.08999 * 110.64800 * 241.43268 * 13 12 10 34 34 H 1.09001 * 110.49745 * 118.49405 * 13 12 10 35 35 H 0.96993 * 120.00019 * 335.00005 * 18 16 14 36 36 H 1.07999 * 120.04993 * 359.97256 * 22 21 19 37 37 H 1.08002 * 119.93165 * 180.25452 * 23 22 21 38 38 H 1.07998 * 120.06501 * 180.02562 * 28 26 24 39 39 H 1.09001 * 110.62531 * 118.48963 * 29 16 14 40 40 H 1.08999 * 110.62811 * 241.50968 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 1.4476 2.6526 -0.7001 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5240 -2.1066 -0.3339 9 7 3.3116 -1.2412 0.4250 10 6 4.1518 -0.2038 1.1141 11 1 3.6577 0.7446 1.3252 12 6 5.3850 -0.1385 0.1635 13 6 5.5132 -1.5826 -0.3624 14 6 4.3406 -2.3324 0.3389 15 1 4.0130 -3.2588 -0.1328 16 6 4.7727 -2.4540 1.8313 17 1 5.8039 -2.7994 1.9056 18 7 3.8723 -3.3529 2.5576 19 6 4.3055 -3.9928 3.6618 20 8 5.4433 -3.8239 4.0554 21 6 3.3975 -4.8988 4.3946 22 6 2.0879 -5.0895 3.9485 23 6 1.2460 -5.9400 4.6324 24 6 1.6933 -6.5979 5.7677 25 9 0.8622 -7.4262 6.4372 26 6 2.9915 -6.4080 6.2192 27 17 3.5441 -7.2349 7.6420 28 6 3.8438 -5.5630 5.5388 29 6 4.6429 -1.0054 2.3629 30 1 -0.4850 -0.8368 -0.0743 31 1 5.1996 0.5522 -0.6590 32 1 6.2793 0.1532 0.7142 33 1 6.4718 -2.0133 -0.0733 34 1 5.3912 -1.6067 -1.4453 35 1 2.9644 -3.4874 2.2439 36 1 1.7365 -4.5743 3.0667 37 1 0.2344 -6.0910 4.2855 38 1 4.8543 -5.4159 5.8904 39 1 3.9086 -0.9558 3.1669 40 1 5.6096 -0.6323 2.7008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097757365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:32 Heat of formation + Delta-G solvation = -7.789430 kcal Electronic energy + Delta-G solvation = -26808.967079 eV Core-core repulsion = 22758.561194 eV Total energy + Delta-G solvation = -4050.405885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.34010 -40.49596 -39.47552 -38.12409 -36.81689 -34.20809 -32.76883 -31.38522 -31.16576 -29.61291 -29.17291 -28.27837 -24.33733 -23.63216 -23.40665 -21.75749 -20.29569 -20.16946 -19.36628 -18.36328 -17.59274 -17.45419 -16.98725 -16.17700 -16.13336 -15.60870 -15.43124 -14.86041 -14.45335 -14.31128 -13.97154 -13.84556 -13.54305 -13.40102 -13.21112 -13.14792 -12.78329 -11.93115 -11.90662 -11.79591 -11.67512 -11.56923 -11.38414 -11.32306 -10.96700 -10.76116 -10.59689 -10.13197 -9.90175 -9.61380 -9.49599 -9.43121 -9.32783 -9.11700 -8.84426 -8.62943 -7.32633 -6.40114 -3.29566 0.27024 0.66701 1.61834 2.52480 3.23922 3.30726 3.44054 3.46556 3.60043 3.63386 4.23408 4.50653 4.52407 4.57477 4.62507 4.73809 5.05561 5.15206 5.27678 5.32110 5.39293 5.49871 5.56605 5.62630 5.65625 5.75662 5.78878 5.83299 5.86633 5.97877 6.11400 6.19079 6.20487 6.37038 6.43542 6.55808 6.65720 6.80631 6.90982 7.29133 7.68530 8.15856 8.28185 8.87704 9.42598 10.22014 11.08519 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.003074 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.210780 B = 9105.138141 C =10151.218821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.020 4.020 3 Si 1.058 2.942 4 H -0.295 1.295 5 H -0.301 1.301 6 H -0.275 1.275 7 C -0.315 4.315 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.118 3.882 11 H 0.095 0.905 12 C -0.140 4.140 13 C -0.127 4.127 14 C 0.129 3.871 15 H 0.095 0.905 16 C 0.131 3.869 17 H 0.089 0.911 18 N -0.698 5.698 19 C 0.556 3.444 20 O -0.542 6.542 21 C -0.127 4.127 22 C -0.049 4.049 23 C -0.146 4.146 24 C 0.130 3.870 25 F -0.123 7.123 26 C -0.085 4.085 27 Cl -0.046 7.046 28 C -0.026 4.026 29 C -0.138 4.138 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.405 0.595 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.065 0.935 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -11.631 8.695 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.220 4.220 3 Si 0.892 3.108 4 H -0.225 1.225 5 H -0.230 1.230 6 H -0.201 1.201 7 C -0.441 4.441 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.012 3.988 11 H 0.113 0.887 12 C -0.179 4.179 13 C -0.167 4.167 14 C 0.021 3.979 15 H 0.113 0.887 16 C 0.024 3.976 17 H 0.107 0.893 18 N -0.348 5.348 19 C 0.342 3.658 20 O -0.421 6.421 21 C -0.131 4.131 22 C -0.068 4.068 23 C -0.165 4.165 24 C 0.110 3.890 25 F -0.101 7.101 26 C -0.113 4.113 27 Cl -0.017 7.017 28 C -0.045 4.045 29 C -0.178 4.178 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.241 0.759 36 H 0.166 0.834 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.084 0.916 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.620 -9.964 9.066 15.477 hybrid contribution -0.483 -1.889 0.046 1.950 sum 7.137 -11.853 9.112 16.567 Atomic orbital electron populations 1.70938 1.05653 1.29748 1.50194 1.25744 0.96355 1.00816 0.99078 0.83921 0.74980 0.76022 0.75879 1.22468 1.22976 1.20091 1.20032 0.84189 0.96269 1.43643 0.90389 1.46941 1.08353 1.10764 1.66634 1.23317 0.90520 0.93570 0.91429 0.88719 1.23060 0.97977 0.97057 0.99814 1.22768 0.97605 0.96129 1.00207 1.23154 0.89606 0.93409 0.91756 0.88722 1.22638 0.92958 0.88847 0.93117 0.89283 1.45934 1.17113 1.44983 1.26734 1.17974 0.86788 0.80128 0.80890 1.90766 1.19145 1.64955 1.67245 1.20081 0.94894 1.00709 0.97407 1.21440 0.91791 0.94721 0.98861 1.21120 1.02185 0.98529 0.94645 1.17645 0.86804 0.92141 0.92459 1.91558 1.70519 1.68961 1.79107 1.20845 0.93754 1.02391 0.94260 1.98395 1.89350 1.77048 1.36894 1.21055 1.00072 0.91360 0.92047 1.23420 1.00426 0.95246 0.98703 0.92814 0.91494 0.92237 0.92337 0.91813 0.75895 0.83394 0.82895 0.82579 0.91609 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 13.70 55.49 0.76 -26.56 16 2 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 3 Si 1.06 25.03 25.01 -169.99 -4.25 20.78 16 4 H -0.30 -6.74 6.60 56.52 0.37 -6.37 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.27 -5.95 4.94 56.52 0.28 -5.67 16 7 C -0.31 -8.04 10.81 -15.06 -0.16 -8.20 16 8 H 0.08 2.09 8.06 -52.49 -0.42 1.66 16 9 N -0.60 -12.91 2.83 -145.55 -0.41 -13.32 16 10 C 0.12 2.32 3.61 -62.55 -0.23 2.09 16 11 H 0.10 2.02 3.45 -51.93 -0.18 1.84 16 12 C -0.14 -2.36 6.20 -24.57 -0.15 -2.52 16 13 C -0.13 -1.99 6.41 -24.57 -0.16 -2.15 16 14 C 0.13 2.22 5.06 -62.80 -0.32 1.91 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 16 C 0.13 2.10 2.80 -65.43 -0.18 1.92 16 17 H 0.09 1.41 7.23 -51.93 -0.38 1.03 16 18 N -0.70 -10.44 5.02 -52.37 -0.26 -10.70 16 19 C 0.56 8.28 7.77 -12.38 -0.10 8.18 16 20 O -0.54 -9.52 15.99 5.30 0.08 -9.43 16 21 C -0.13 -1.57 5.87 -104.97 -0.62 -2.18 16 22 C -0.05 -0.52 9.54 -39.20 -0.37 -0.89 16 23 C -0.15 -1.41 10.01 -39.58 -0.40 -1.81 16 24 C 0.13 1.40 7.28 -39.25 -0.29 1.11 16 25 F -0.12 -1.37 16.83 2.25 0.04 -1.33 16 26 C -0.08 -0.94 6.32 -39.50 -0.25 -1.19 16 27 Cl -0.05 -0.48 28.60 -51.86 -1.48 -1.96 16 28 C -0.03 -0.30 9.37 -39.16 -0.37 -0.67 16 29 C -0.14 -2.39 6.25 -23.98 -0.15 -2.54 16 30 H 0.26 7.60 8.73 -40.82 -0.36 7.24 16 31 H 0.07 1.20 6.50 -51.93 -0.34 0.86 16 32 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 33 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.40 5.82 6.69 -40.82 -0.27 5.55 16 36 H 0.15 1.43 6.40 -52.49 -0.34 1.09 16 37 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.16 1.79 7.65 -52.49 -0.40 1.39 16 39 H 0.07 1.22 7.98 -51.93 -0.41 0.80 16 40 H 0.06 1.02 7.83 -51.93 -0.41 0.61 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -29.90 339.92 -8.76 -38.67 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.53 Total: 6.30 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.83 Total: -7.57 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.09 Total: -50.58 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.25 Total: 20.78 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.48 Total: -1.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.90 -8.76 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097757365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.878 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds