Wall clock time and date at job start Tue Mar 31 2020 20:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48504 * 109.46962 * 89.99581 * 3 2 1 5 5 H 1.48504 * 109.46990 * 329.99775 * 3 2 1 6 6 H 1.48500 * 109.47287 * 209.99847 * 3 2 1 7 7 C 1.38810 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99934 * 20.97550 * 7 2 1 9 9 N 1.36936 * 120.00256 * 200.96992 * 7 2 1 10 10 C 1.50235 * 130.83434 * 10.02788 * 9 7 2 11 11 H 1.09001 * 115.85873 * 0.39466 * 10 9 7 12 12 C 1.55844 * 101.05157 * 234.00267 * 10 9 7 13 13 C 1.54226 * 103.56206 * 327.15101 * 12 10 9 14 14 C 1.50230 * 130.83719 * 190.36612 * 9 7 2 15 15 H 1.08998 * 115.86484 * 359.60955 * 14 9 7 16 16 C 1.55848 * 101.04899 * 233.93276 * 14 9 7 17 17 H 1.09004 * 110.62609 * 208.57177 * 16 14 9 18 18 N 1.46501 * 110.62589 * 85.55261 * 16 14 9 19 19 C 1.34774 * 119.99666 * 154.99935 * 18 16 14 20 20 O 1.21572 * 120.00597 * 0.02562 * 19 18 16 21 21 C 1.47727 * 119.99953 * 179.97438 * 19 18 16 22 22 C 1.39660 * 120.11166 * 359.73083 * 21 19 18 23 23 C 1.37837 * 119.90207 * 179.74052 * 22 21 19 24 24 C 1.38634 * 120.13715 * 0.50493 * 23 22 21 25 25 F 1.35095 * 119.88792 * 179.73868 * 24 23 22 26 26 C 1.38746 * 120.22536 * 359.77459 * 24 23 22 27 27 Cl 1.73599 * 119.95350 * 179.97438 * 26 24 23 28 28 C 1.37961 * 120.09495 * 359.96611 * 26 24 23 29 29 C 1.54849 * 103.44542 * 327.06281 * 16 14 9 30 30 H 0.97000 * 119.99970 * 174.92758 * 1 2 3 31 31 H 1.08993 * 110.62534 * 85.55411 * 12 10 9 32 32 H 1.08995 * 110.62888 * 208.42179 * 12 10 9 33 33 H 1.08999 * 110.64800 * 241.43268 * 13 12 10 34 34 H 1.09001 * 110.49745 * 118.49405 * 13 12 10 35 35 H 0.96993 * 120.00019 * 335.00005 * 18 16 14 36 36 H 1.07999 * 120.04993 * 359.97256 * 22 21 19 37 37 H 1.08002 * 119.93165 * 180.25452 * 23 22 21 38 38 H 1.07998 * 120.06501 * 180.02562 * 28 26 24 39 39 H 1.09001 * 110.62531 * 118.48963 * 29 16 14 40 40 H 1.08999 * 110.62811 * 241.50968 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 1.4476 2.6526 -0.7001 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.5240 -2.1066 -0.3339 9 7 3.3116 -1.2412 0.4250 10 6 4.1518 -0.2038 1.1141 11 1 3.6577 0.7446 1.3252 12 6 5.3850 -0.1385 0.1635 13 6 5.5132 -1.5826 -0.3624 14 6 4.3406 -2.3324 0.3389 15 1 4.0130 -3.2588 -0.1328 16 6 4.7727 -2.4540 1.8313 17 1 5.8039 -2.7994 1.9056 18 7 3.8723 -3.3529 2.5576 19 6 4.3055 -3.9928 3.6618 20 8 5.4433 -3.8239 4.0554 21 6 3.3975 -4.8988 4.3946 22 6 2.0879 -5.0895 3.9485 23 6 1.2460 -5.9400 4.6324 24 6 1.6933 -6.5979 5.7677 25 9 0.8622 -7.4262 6.4372 26 6 2.9915 -6.4080 6.2192 27 17 3.5441 -7.2349 7.6420 28 6 3.8438 -5.5630 5.5388 29 6 4.6429 -1.0054 2.3629 30 1 -0.4850 -0.8368 -0.0743 31 1 5.1996 0.5522 -0.6590 32 1 6.2793 0.1532 0.7142 33 1 6.4718 -2.0133 -0.0733 34 1 5.3912 -1.6067 -1.4453 35 1 2.9644 -3.4874 2.2439 36 1 1.7365 -4.5743 3.0667 37 1 0.2344 -6.0910 4.2855 38 1 4.8543 -5.4159 5.8904 39 1 3.9086 -0.9558 3.1669 40 1 5.6096 -0.6323 2.7008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097757365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:31 Heat of formation + Delta-G solvation = -25.336145 kcal Electronic energy + Delta-G solvation = -26809.727962 eV Core-core repulsion = 22758.561194 eV Total energy + Delta-G solvation = -4051.166767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.21199 -41.70173 -40.68828 -39.22993 -37.67941 -35.52216 -34.67357 -32.26069 -32.16071 -31.32860 -30.55659 -29.58473 -25.66950 -25.10338 -24.29754 -22.94814 -21.86288 -21.44876 -20.70499 -19.42113 -19.25373 -18.56940 -18.04302 -17.56671 -17.01445 -16.86153 -16.52713 -16.12254 -15.72969 -15.30373 -15.22030 -15.17875 -15.09949 -14.62865 -14.36226 -14.12929 -14.07537 -13.39637 -13.27533 -13.15027 -12.92047 -12.65858 -12.65076 -12.51791 -12.24009 -12.16960 -11.98082 -11.54909 -11.32188 -11.27179 -11.17256 -10.88109 -10.69728 -10.30064 -10.13912 -9.88693 -9.18975 -8.49944 -5.31241 -0.65229 -0.18546 0.76061 1.41204 1.51159 1.55320 1.71833 2.09554 2.45203 2.58720 2.76957 3.02236 3.24905 3.39979 3.49584 3.75714 3.82773 3.86690 3.88740 4.07346 4.23487 4.26313 4.38649 4.47037 4.53681 4.60436 4.61753 4.62315 4.76330 4.80132 4.84034 4.91870 5.09049 5.13032 5.21994 5.33185 5.36559 5.43233 5.59357 5.62227 6.12542 6.48529 6.83436 7.09484 7.47232 8.31982 9.00761 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.003074 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.210780 B = 9105.138141 C =10151.218821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.081 4.081 3 Si 1.091 2.909 4 H -0.288 1.288 5 H -0.321 1.321 6 H -0.244 1.244 7 C -0.280 4.280 8 H 0.057 0.943 9 N -0.625 5.625 10 C 0.102 3.898 11 H 0.077 0.923 12 C -0.135 4.135 13 C -0.120 4.120 14 C 0.129 3.871 15 H 0.100 0.900 16 C 0.139 3.861 17 H 0.102 0.898 18 N -0.699 5.699 19 C 0.560 3.440 20 O -0.570 6.570 21 C -0.139 4.139 22 C -0.045 4.045 23 C -0.137 4.137 24 C 0.129 3.871 25 F -0.124 7.124 26 C -0.089 4.089 27 Cl -0.041 7.041 28 C -0.026 4.026 29 C -0.131 4.131 30 H 0.248 0.752 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.406 0.594 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.155 0.845 39 H 0.047 0.953 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 -12.421 9.059 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.274 4.274 3 Si 0.922 3.078 4 H -0.216 1.216 5 H -0.251 1.251 6 H -0.169 1.169 7 C -0.409 4.409 8 H 0.075 0.925 9 N -0.350 5.350 10 C -0.003 4.003 11 H 0.094 0.906 12 C -0.174 4.174 13 C -0.159 4.159 14 C 0.022 3.978 15 H 0.118 0.882 16 C 0.033 3.967 17 H 0.120 0.880 18 N -0.348 5.348 19 C 0.347 3.653 20 O -0.451 6.451 21 C -0.143 4.143 22 C -0.063 4.063 23 C -0.155 4.155 24 C 0.109 3.891 25 F -0.102 7.102 26 C -0.116 4.116 27 Cl -0.012 7.012 28 C -0.046 4.046 29 C -0.172 4.172 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.173 0.827 39 H 0.066 0.934 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.796 -10.790 9.441 17.365 hybrid contribution -1.108 -1.797 -0.008 2.112 sum 8.688 -12.588 9.433 17.970 Atomic orbital electron populations 1.71036 1.06992 1.28999 1.54544 1.26693 0.96357 1.03864 1.00503 0.83528 0.75076 0.72827 0.76396 1.21638 1.25069 1.16863 1.19909 0.86057 0.94893 1.40027 0.92547 1.46980 1.07979 1.12966 1.67031 1.23511 0.91170 0.92656 0.92990 0.90587 1.23040 0.97691 0.97644 0.99023 1.22744 0.98214 0.95080 0.99904 1.23380 0.88971 0.92637 0.92834 0.88184 1.22526 0.93711 0.88407 0.92086 0.87981 1.45922 1.17108 1.44870 1.26885 1.18237 0.86664 0.79860 0.80505 1.90745 1.20403 1.65994 1.67923 1.19911 0.95273 1.01196 0.97879 1.21518 0.91149 0.94643 0.99024 1.21346 1.03045 0.97364 0.93787 1.17779 0.86651 0.92050 0.92661 1.91559 1.70497 1.69003 1.79182 1.20870 0.93911 1.02404 0.94453 1.98397 1.89355 1.76897 1.36596 1.21022 1.00160 0.91444 0.91952 1.23374 1.00950 0.95727 0.97106 0.94209 0.92564 0.89017 0.88981 0.91944 0.75687 0.82645 0.80465 0.82707 0.93423 0.89366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.38 13.70 21.65 0.30 -59.09 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 1.09 51.03 25.01 68.60 1.72 52.75 16 4 H -0.29 -12.87 6.60 99.48 0.66 -12.21 16 5 H -0.32 -15.87 7.11 99.48 0.71 -15.17 16 6 H -0.24 -10.02 4.94 99.48 0.49 -9.52 16 7 C -0.28 -14.40 10.81 84.03 0.91 -13.49 16 8 H 0.06 3.08 8.06 -2.91 -0.02 3.06 16 9 N -0.63 -25.86 2.83 -614.40 -1.74 -27.60 16 10 C 0.10 3.78 3.61 46.39 0.17 3.95 16 11 H 0.08 3.12 3.45 -2.39 -0.01 3.11 16 12 C -0.14 -4.04 6.20 31.99 0.20 -3.84 16 13 C -0.12 -3.27 6.41 31.99 0.21 -3.07 16 14 C 0.13 4.08 5.06 46.23 0.23 4.32 16 15 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 16 C 0.14 4.09 2.80 46.61 0.13 4.22 16 17 H 0.10 2.83 7.23 -2.38 -0.02 2.81 16 18 N -0.70 -19.72 5.02 -437.87 -2.20 -21.92 16 19 C 0.56 15.86 7.77 86.75 0.67 16.53 16 20 O -0.57 -19.12 15.99 -3.94 -0.06 -19.18 16 21 C -0.14 -3.25 5.87 -20.09 -0.12 -3.36 16 22 C -0.04 -0.87 9.54 22.52 0.21 -0.65 16 23 C -0.14 -2.35 10.01 22.27 0.22 -2.13 16 24 C 0.13 2.55 7.28 22.49 0.16 2.71 16 25 F -0.12 -2.53 16.83 44.97 0.76 -1.78 16 26 C -0.09 -1.85 6.32 22.33 0.14 -1.71 16 27 Cl -0.04 -0.82 28.60 -2.72 -0.08 -0.90 16 28 C -0.03 -0.58 9.37 22.54 0.21 -0.37 16 29 C -0.13 -4.22 6.25 32.38 0.20 -4.02 16 30 H 0.25 15.12 8.73 -92.71 -0.81 14.31 16 31 H 0.06 1.81 6.50 -2.39 -0.02 1.79 16 32 H 0.09 2.18 7.83 -2.39 -0.02 2.16 16 33 H 0.09 1.96 7.82 -2.39 -0.02 1.94 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 11.20 6.69 -92.71 -0.62 10.58 16 36 H 0.16 2.77 6.40 -2.91 -0.02 2.75 16 37 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.16 3.44 7.65 -2.91 -0.02 3.42 16 39 H 0.05 1.69 7.98 -2.39 -0.02 1.68 16 40 H 0.09 2.43 7.83 -2.39 -0.02 2.41 16 Total: -1.00 -65.55 339.92 2.89 -62.66 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.18 Total: 20.02 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.02 Total: -4.96 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -3.64 Total: -108.61 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.06 Total: -19.18 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.76 Total: -1.78 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 1.72 Total: 52.75 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -65.55 2.89 -62.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097757365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.321 kcal (2) G-P(sol) polarization free energy of solvation -65.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds