Wall clock time and date at job start Tue Mar 31 2020 20:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48501 * 109.47198 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46714 * 239.99666 * 3 2 1 6 6 H 1.48494 * 109.47197 * 119.99952 * 3 2 1 7 7 C 1.38806 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 157.98197 * 7 2 1 9 9 N 1.36941 * 119.99862 * 337.98637 * 7 2 1 10 10 C 1.50238 * 130.83797 * 342.39556 * 9 7 2 11 11 H 1.08991 * 115.86175 * 0.39214 * 10 9 7 12 12 C 1.55847 * 101.04723 * 234.00583 * 10 9 7 13 13 C 1.54218 * 103.56830 * 327.14938 * 12 10 9 14 14 C 1.50236 * 130.83651 * 162.74191 * 9 7 2 15 15 H 1.09003 * 115.86318 * 359.59448 * 14 9 7 16 16 C 1.55855 * 101.04905 * 233.92933 * 14 9 7 17 17 H 1.08998 * 110.62481 * 208.57755 * 16 14 9 18 18 N 1.46494 * 110.62822 * 85.54776 * 16 14 9 19 19 C 1.34771 * 119.99887 * 155.00276 * 18 16 14 20 20 O 1.21563 * 120.00244 * 0.02562 * 19 18 16 21 21 C 1.47798 * 120.00288 * 180.02562 * 19 18 16 22 22 C 1.39629 * 120.11321 * 359.72408 * 21 19 18 23 23 C 1.37897 * 119.91176 * 179.76980 * 22 21 19 24 24 C 1.38488 * 120.15810 * 0.48946 * 23 22 21 25 25 Cl 1.73598 * 119.87691 * 179.76921 * 24 23 22 26 26 C 1.38696 * 120.24387 * 359.77975 * 24 23 22 27 27 F 1.35097 * 119.95791 * 179.97438 * 26 24 23 28 28 C 1.38132 * 120.08244 * 359.96755 * 26 24 23 29 29 C 1.54855 * 103.44066 * 327.05779 * 16 14 9 30 30 H 0.97000 * 119.99592 * 173.97059 * 1 2 3 31 31 H 1.09004 * 110.62907 * 85.55612 * 12 10 9 32 32 H 1.09006 * 110.62362 * 208.41201 * 12 10 9 33 33 H 1.09002 * 110.64963 * 241.43899 * 13 12 10 34 34 H 1.08996 * 110.49962 * 118.49541 * 13 12 10 35 35 H 0.97008 * 120.00316 * 335.00697 * 18 16 14 36 36 H 1.07997 * 120.04621 * 359.97438 * 22 21 19 37 37 H 1.07997 * 119.92092 * 180.23076 * 23 22 21 38 38 H 1.07997 * 120.08450 * 180.02562 * 28 26 24 39 39 H 1.08999 * 110.62274 * 118.48658 * 29 16 14 40 40 H 1.08997 * 110.63159 * 241.50735 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0312 -1.2364 -0.3501 9 7 1.4005 -2.3446 0.4456 10 6 0.1705 -2.5381 1.2863 11 1 -0.3392 -1.6272 1.5999 12 6 0.7282 -3.4403 2.4282 13 6 1.8060 -4.2897 1.7245 14 6 1.7593 -3.7902 0.2491 15 1 2.6488 -3.9820 -0.3511 16 6 0.4253 -4.3534 -0.3272 17 1 0.3110 -5.4068 -0.0715 18 7 0.3695 -4.1642 -1.7788 19 6 -0.3946 -4.9766 -2.5354 20 8 -1.0379 -5.8662 -2.0133 21 6 -0.4505 -4.7861 -4.0000 22 6 0.2828 -3.7615 -4.6016 23 6 0.2314 -3.5905 -5.9690 24 6 -0.5538 -4.4261 -6.7456 25 17 -0.6179 -4.2005 -8.4657 26 6 -1.2893 -5.4424 -6.1542 27 9 -2.0538 -6.2539 -6.9172 28 6 -1.2411 -5.6260 -4.7860 29 6 -0.6592 -3.5006 0.3762 30 1 -0.4849 -0.8354 -0.0882 31 1 1.1750 -2.8320 3.2147 32 1 -0.0591 -4.0746 2.8356 33 1 1.5566 -5.3494 1.7792 34 1 2.7863 -4.1018 2.1626 35 1 0.8826 -3.4541 -2.1955 36 1 0.8922 -3.1059 -3.9973 37 1 0.8015 -2.8004 -6.4349 38 1 -1.8135 -6.4176 -4.3254 39 1 -1.2384 -2.9369 -0.3551 40 1 -1.3113 -4.1311 0.9806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097911472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:41 Heat of formation + Delta-G solvation = -16.882284 kcal Electronic energy + Delta-G solvation = -26876.803528 eV Core-core repulsion = 22826.003348 eV Total energy + Delta-G solvation = -4050.800180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.21757 -40.40586 -39.34655 -38.10222 -36.77327 -34.12927 -32.87738 -31.42775 -30.94315 -29.16872 -28.97823 -27.85192 -24.47825 -23.95100 -23.16624 -21.67601 -20.24849 -20.00858 -19.02532 -18.30149 -17.69740 -17.04448 -16.76993 -16.29295 -16.05480 -15.75978 -14.89312 -14.64214 -14.33385 -14.26214 -13.86028 -13.77819 -13.65572 -13.33853 -13.23806 -12.65753 -12.49293 -12.03832 -11.93839 -11.73461 -11.64282 -11.43566 -11.24654 -10.84765 -10.76305 -10.70228 -10.50071 -10.15794 -10.04184 -9.89286 -9.50101 -9.44710 -9.36784 -9.07057 -8.81141 -8.56919 -7.12364 -6.20574 -3.27622 0.28118 0.75995 1.63457 2.58803 3.22163 3.40571 3.45945 3.52158 3.63047 3.78077 4.31797 4.41927 4.59817 4.65214 4.81151 4.86623 5.18414 5.22156 5.37813 5.44500 5.47787 5.56722 5.65810 5.69857 5.76270 5.85408 5.89526 5.92301 6.01340 6.14095 6.23975 6.28090 6.38405 6.46393 6.56346 6.71561 6.79677 6.98037 7.13464 7.44566 7.75738 8.26409 8.34526 8.83543 9.64793 10.33714 11.15643 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003363 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.993291 B = 8323.989101 C = 9979.000822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.323 4.323 8 H 0.065 0.935 9 N -0.594 5.594 10 C 0.140 3.860 11 H 0.109 0.891 12 C -0.134 4.134 13 C -0.125 4.125 14 C 0.126 3.874 15 H 0.091 0.909 16 C 0.127 3.873 17 H 0.085 0.915 18 N -0.694 5.694 19 C 0.553 3.447 20 O -0.542 6.542 21 C -0.093 4.093 22 C -0.081 4.081 23 C -0.087 4.087 24 C -0.056 4.056 25 Cl -0.047 7.047 26 C 0.101 3.899 27 F -0.124 7.124 28 C -0.087 4.087 29 C -0.140 4.140 30 H 0.271 0.729 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.405 0.595 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.158 0.842 39 H 0.064 0.936 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -9.138 -9.503 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.226 4.226 3 Si 0.896 3.104 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.451 4.451 8 H 0.083 0.917 9 N -0.317 5.317 10 C 0.033 3.967 11 H 0.127 0.873 12 C -0.174 4.174 13 C -0.165 4.165 14 C 0.018 3.982 15 H 0.109 0.891 16 C 0.021 3.979 17 H 0.103 0.897 18 N -0.344 5.344 19 C 0.339 3.661 20 O -0.421 6.421 21 C -0.097 4.097 22 C -0.100 4.100 23 C -0.105 4.105 24 C -0.084 4.084 25 Cl -0.018 7.018 26 C 0.081 3.919 27 F -0.103 7.103 28 C -0.106 4.106 29 C -0.181 4.181 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.241 0.759 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.083 0.917 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.204 -7.901 -9.295 12.200 hybrid contribution 0.281 -1.397 -0.663 1.572 sum 0.485 -9.298 -9.958 13.632 Atomic orbital electron populations 1.70784 1.06477 1.30569 1.48433 1.25719 0.96623 1.00786 0.99482 0.83491 0.74668 0.76111 0.76117 1.21062 1.22088 1.22148 1.19710 0.95848 0.86213 1.43285 0.91677 1.46558 1.29262 0.99300 1.56540 1.23140 0.88791 0.95247 0.89517 0.87323 1.22840 0.97740 0.98235 0.98537 1.22748 0.99150 0.97810 0.96760 1.23213 0.93969 0.86710 0.94292 0.89087 1.22670 0.98527 0.98978 0.77776 0.89743 1.45934 1.46494 1.33462 1.08471 1.18012 0.80144 0.82268 0.85715 1.90761 1.44009 1.33408 1.73931 1.20029 0.98591 0.96708 0.94344 1.21508 0.97675 0.96444 0.94349 1.20960 0.97836 0.98639 0.93096 1.21230 1.01873 0.98681 0.86625 1.98397 1.97473 1.96449 1.09500 1.17197 0.94635 0.91291 0.88825 1.91554 1.72921 1.70776 1.75037 1.21197 0.98753 1.00339 0.90349 1.23512 0.97086 0.98041 0.99431 0.91705 0.92456 0.92713 0.92571 0.92094 0.75873 0.83416 0.83104 0.82450 0.91698 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.70 12.67 55.49 0.70 -25.00 16 2 C -0.02 -0.64 5.34 -17.43 -0.09 -0.74 16 3 Si 1.07 23.71 29.97 -169.99 -5.10 18.61 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.32 -8.14 10.42 -15.06 -0.16 -8.29 16 8 H 0.07 1.63 7.92 -52.49 -0.42 1.22 16 9 N -0.59 -13.20 2.83 -145.54 -0.41 -13.61 16 10 C 0.14 2.93 3.84 -62.54 -0.24 2.69 16 11 H 0.11 2.60 6.54 -51.93 -0.34 2.26 16 12 C -0.13 -2.37 6.41 -24.57 -0.16 -2.53 16 13 C -0.12 -2.05 6.41 -24.58 -0.16 -2.21 16 14 C 0.13 2.29 5.06 -62.80 -0.32 1.97 16 15 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 16 C 0.13 2.21 2.80 -65.43 -0.18 2.03 16 17 H 0.08 1.46 7.23 -51.93 -0.38 1.09 16 18 N -0.69 -11.31 5.02 -52.35 -0.26 -11.57 16 19 C 0.55 8.92 7.77 -12.35 -0.10 8.82 16 20 O -0.54 -10.20 15.99 5.31 0.08 -10.11 16 21 C -0.09 -1.25 5.87 -104.97 -0.62 -1.86 16 22 C -0.08 -0.92 9.54 -39.19 -0.37 -1.30 16 23 C -0.09 -0.89 9.81 -39.61 -0.39 -1.28 16 24 C -0.06 -0.63 6.33 -39.32 -0.25 -0.87 16 25 Cl -0.05 -0.49 28.60 -51.86 -1.48 -1.97 16 26 C 0.10 1.21 7.26 -39.45 -0.29 0.93 16 27 F -0.12 -1.53 16.82 2.25 0.04 -1.50 16 28 C -0.09 -1.09 9.57 -39.12 -0.37 -1.47 16 29 C -0.14 -2.67 6.11 -23.98 -0.15 -2.82 16 30 H 0.27 7.47 5.66 -40.82 -0.23 7.24 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.86 7.83 -51.93 -0.41 0.45 16 33 H 0.06 0.81 7.82 -51.93 -0.41 0.40 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 6.41 6.69 -40.82 -0.27 6.14 16 36 H 0.15 1.58 6.40 -52.49 -0.34 1.25 16 37 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.16 1.95 7.65 -52.49 -0.40 1.55 16 39 H 0.06 1.36 7.57 -51.93 -0.39 0.97 16 40 H 0.06 1.05 7.83 -51.93 -0.41 0.64 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -28.96 347.40 -9.50 -38.46 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.47 Total: 8.37 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.84 Total: -6.93 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.03 Total: -50.17 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.10 Total: 18.61 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.96 -9.50 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097911472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.581 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds