Wall clock time and date at job start Tue Mar 31 2020 20:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48501 * 109.47198 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46714 * 239.99666 * 3 2 1 6 6 H 1.48494 * 109.47197 * 119.99952 * 3 2 1 7 7 C 1.38806 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 157.98197 * 7 2 1 9 9 N 1.36941 * 119.99862 * 337.98637 * 7 2 1 10 10 C 1.50238 * 130.83797 * 342.39556 * 9 7 2 11 11 H 1.08991 * 115.86175 * 0.39214 * 10 9 7 12 12 C 1.55847 * 101.04723 * 234.00583 * 10 9 7 13 13 C 1.54218 * 103.56830 * 327.14938 * 12 10 9 14 14 C 1.50236 * 130.83651 * 162.74191 * 9 7 2 15 15 H 1.09003 * 115.86318 * 359.59448 * 14 9 7 16 16 C 1.55855 * 101.04905 * 233.92933 * 14 9 7 17 17 H 1.08998 * 110.62481 * 208.57755 * 16 14 9 18 18 N 1.46494 * 110.62822 * 85.54776 * 16 14 9 19 19 C 1.34771 * 119.99887 * 155.00276 * 18 16 14 20 20 O 1.21563 * 120.00244 * 0.02562 * 19 18 16 21 21 C 1.47798 * 120.00288 * 180.02562 * 19 18 16 22 22 C 1.39629 * 120.11321 * 359.72408 * 21 19 18 23 23 C 1.37897 * 119.91176 * 179.76980 * 22 21 19 24 24 C 1.38488 * 120.15810 * 0.48946 * 23 22 21 25 25 Cl 1.73598 * 119.87691 * 179.76921 * 24 23 22 26 26 C 1.38696 * 120.24387 * 359.77975 * 24 23 22 27 27 F 1.35097 * 119.95791 * 179.97438 * 26 24 23 28 28 C 1.38132 * 120.08244 * 359.96755 * 26 24 23 29 29 C 1.54855 * 103.44066 * 327.05779 * 16 14 9 30 30 H 0.97000 * 119.99592 * 173.97059 * 1 2 3 31 31 H 1.09004 * 110.62907 * 85.55612 * 12 10 9 32 32 H 1.09006 * 110.62362 * 208.41201 * 12 10 9 33 33 H 1.09002 * 110.64963 * 241.43899 * 13 12 10 34 34 H 1.08996 * 110.49962 * 118.49541 * 13 12 10 35 35 H 0.97008 * 120.00316 * 335.00697 * 18 16 14 36 36 H 1.07997 * 120.04621 * 359.97438 * 22 21 19 37 37 H 1.07997 * 119.92092 * 180.23076 * 23 22 21 38 38 H 1.07997 * 120.08450 * 180.02562 * 28 26 24 39 39 H 1.08999 * 110.62274 * 118.48658 * 29 16 14 40 40 H 1.08997 * 110.63159 * 241.50735 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0312 -1.2364 -0.3501 9 7 1.4005 -2.3446 0.4456 10 6 0.1705 -2.5381 1.2863 11 1 -0.3392 -1.6272 1.5999 12 6 0.7282 -3.4403 2.4282 13 6 1.8060 -4.2897 1.7245 14 6 1.7593 -3.7902 0.2491 15 1 2.6488 -3.9820 -0.3511 16 6 0.4253 -4.3534 -0.3272 17 1 0.3110 -5.4068 -0.0715 18 7 0.3695 -4.1642 -1.7788 19 6 -0.3946 -4.9766 -2.5354 20 8 -1.0379 -5.8662 -2.0133 21 6 -0.4505 -4.7861 -4.0000 22 6 0.2828 -3.7615 -4.6016 23 6 0.2314 -3.5905 -5.9690 24 6 -0.5538 -4.4261 -6.7456 25 17 -0.6179 -4.2005 -8.4657 26 6 -1.2893 -5.4424 -6.1542 27 9 -2.0538 -6.2539 -6.9172 28 6 -1.2411 -5.6260 -4.7860 29 6 -0.6592 -3.5006 0.3762 30 1 -0.4849 -0.8354 -0.0882 31 1 1.1750 -2.8320 3.2147 32 1 -0.0591 -4.0746 2.8356 33 1 1.5566 -5.3494 1.7792 34 1 2.7863 -4.1018 2.1626 35 1 0.8826 -3.4541 -2.1955 36 1 0.8922 -3.1059 -3.9973 37 1 0.8015 -2.8004 -6.4349 38 1 -1.8135 -6.4176 -4.3254 39 1 -1.2384 -2.9369 -0.3551 40 1 -1.3113 -4.1311 0.9806 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097911472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:40 Heat of formation + Delta-G solvation = -31.821515 kcal Electronic energy + Delta-G solvation = -26877.451342 eV Core-core repulsion = 22826.003348 eV Total energy + Delta-G solvation = -4051.447994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.17545 -41.69584 -40.64461 -39.28765 -37.67363 -35.55698 -34.67225 -32.42720 -31.94613 -30.86485 -30.44824 -29.30886 -25.99163 -25.37775 -24.10760 -22.98224 -21.66190 -21.49725 -20.47989 -19.51530 -19.42001 -18.09318 -17.73787 -17.44113 -17.04171 -16.99107 -16.52425 -15.95964 -15.71036 -15.53265 -15.33905 -15.18416 -14.86754 -14.64797 -14.16621 -14.06636 -13.62123 -13.44834 -13.28007 -12.99412 -12.95499 -12.63164 -12.56126 -12.37608 -12.17450 -12.09893 -11.95219 -11.91698 -11.56683 -11.40040 -11.26412 -10.89771 -10.59096 -10.30981 -10.14467 -9.90726 -8.95627 -8.20854 -5.22624 -0.71028 -0.16282 0.74728 1.48771 1.62502 1.69504 1.86935 1.99921 2.42613 2.66428 2.82723 3.22349 3.38519 3.40159 3.46736 3.73943 3.85354 3.87000 3.95310 4.13737 4.25852 4.29824 4.37292 4.45750 4.50547 4.58765 4.68626 4.70227 4.77037 4.82003 4.90304 4.91752 5.06604 5.08242 5.28190 5.33101 5.37102 5.48025 5.59498 5.69710 6.34174 6.45281 6.89533 7.05151 7.73261 8.50133 9.17338 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003363 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.993291 B = 8323.989101 C = 9979.000822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.076 4.076 3 Si 1.111 2.889 4 H -0.300 1.300 5 H -0.273 1.273 6 H -0.288 1.288 7 C -0.316 4.316 8 H 0.065 0.935 9 N -0.615 5.615 10 C 0.130 3.870 11 H 0.070 0.930 12 C -0.126 4.126 13 C -0.116 4.116 14 C 0.127 3.873 15 H 0.102 0.898 16 C 0.136 3.864 17 H 0.095 0.905 18 N -0.694 5.694 19 C 0.555 3.445 20 O -0.572 6.572 21 C -0.108 4.108 22 C -0.075 4.075 23 C -0.077 4.077 24 C -0.053 4.053 25 Cl -0.036 7.036 26 C 0.095 3.905 27 F -0.127 7.127 28 C -0.088 4.088 29 C -0.131 4.131 30 H 0.261 0.739 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.155 0.845 37 H 0.179 0.821 38 H 0.155 0.845 39 H 0.036 0.964 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -9.948 -10.282 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.272 4.272 3 Si 0.937 3.063 4 H -0.227 1.227 5 H -0.199 1.199 6 H -0.215 1.215 7 C -0.444 4.444 8 H 0.083 0.917 9 N -0.338 5.338 10 C 0.024 3.976 11 H 0.088 0.912 12 C -0.166 4.166 13 C -0.155 4.155 14 C 0.020 3.980 15 H 0.120 0.880 16 C 0.029 3.971 17 H 0.113 0.887 18 N -0.343 5.343 19 C 0.342 3.658 20 O -0.453 6.453 21 C -0.111 4.111 22 C -0.094 4.094 23 C -0.095 4.095 24 C -0.081 4.081 25 Cl -0.007 7.007 26 C 0.075 3.925 27 F -0.106 7.106 28 C -0.108 4.108 29 C -0.172 4.172 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.244 0.756 36 H 0.173 0.827 37 H 0.196 0.804 38 H 0.172 0.828 39 H 0.054 0.946 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.660 -8.744 -10.083 13.449 hybrid contribution -0.175 -1.193 -0.469 1.294 sum 1.486 -9.937 -10.552 14.570 Atomic orbital electron populations 1.70864 1.07525 1.30072 1.51645 1.26786 0.96659 1.03698 1.00088 0.82871 0.73669 0.72681 0.77048 1.22705 1.19889 1.21498 1.19928 0.95742 0.87332 1.41420 0.91675 1.46719 1.29584 1.00384 1.57137 1.23084 0.88666 0.94739 0.91156 0.91206 1.22777 0.98690 0.97951 0.97139 1.22710 0.98884 0.99127 0.94813 1.23414 0.94490 0.84269 0.95785 0.87984 1.22540 0.97287 0.98889 0.78340 0.88744 1.45895 1.46668 1.33612 1.08114 1.18350 0.79173 0.81443 0.86792 1.90736 1.45150 1.34638 1.74796 1.19819 1.00311 0.98231 0.92733 1.21595 0.97067 0.95688 0.95012 1.21218 0.97223 0.98678 0.92398 1.21359 1.01292 0.98190 0.87299 1.98406 1.97387 1.96337 1.08597 1.17208 0.95009 0.91702 0.88579 1.91546 1.73074 1.70956 1.74994 1.21154 0.98698 1.00258 0.90690 1.23395 0.97265 0.97726 0.98790 0.92801 0.93338 0.90304 0.89566 0.91667 0.75629 0.82725 0.80382 0.82774 0.94558 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.97 12.67 21.65 0.27 -54.69 16 2 C -0.08 -4.03 5.34 84.86 0.45 -3.58 16 3 Si 1.11 48.12 29.97 68.60 2.06 50.18 16 4 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.32 -15.84 10.42 84.03 0.88 -14.97 16 8 H 0.07 3.20 7.92 -2.91 -0.02 3.18 16 9 N -0.62 -27.10 2.83 -614.38 -1.74 -28.84 16 10 C 0.13 5.49 3.84 46.39 0.18 5.67 16 11 H 0.07 3.49 6.54 -2.39 -0.02 3.48 16 12 C -0.13 -4.27 6.41 31.99 0.21 -4.07 16 13 C -0.12 -3.48 6.41 31.99 0.21 -3.27 16 14 C 0.13 4.38 5.06 46.23 0.23 4.62 16 15 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 16 C 0.14 4.56 2.80 46.61 0.13 4.70 16 17 H 0.09 3.05 7.23 -2.39 -0.02 3.03 16 18 N -0.69 -22.12 5.02 -437.81 -2.20 -24.32 16 19 C 0.55 17.66 7.77 86.77 0.67 18.33 16 20 O -0.57 -21.36 15.99 -3.92 -0.06 -21.42 16 21 C -0.11 -2.80 5.87 -20.09 -0.12 -2.91 16 22 C -0.07 -1.59 9.54 22.52 0.21 -1.38 16 23 C -0.08 -1.39 9.81 22.25 0.22 -1.18 16 24 C -0.05 -1.09 6.33 22.44 0.14 -0.95 16 25 Cl -0.04 -0.68 28.60 -2.72 -0.08 -0.76 16 26 C 0.10 2.18 7.26 22.35 0.16 2.35 16 27 F -0.13 -3.01 16.82 44.97 0.76 -2.26 16 28 C -0.09 -2.18 9.57 22.57 0.22 -1.97 16 29 C -0.13 -4.99 6.11 32.38 0.20 -4.79 16 30 H 0.26 15.00 5.66 -92.71 -0.53 14.48 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.28 7.83 -2.38 -0.02 2.26 16 33 H 0.09 2.12 7.82 -2.39 -0.02 2.10 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.41 12.62 6.69 -92.70 -0.62 12.00 16 36 H 0.16 3.08 6.40 -2.91 -0.02 3.06 16 37 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.15 3.85 7.65 -2.91 -0.02 3.83 16 39 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 40 H 0.07 2.57 7.83 -2.39 -0.02 2.55 16 Total: -1.00 -63.00 347.40 3.72 -59.28 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.72 Total: 26.24 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 3.99 Total: -3.40 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -3.66 Total: -107.86 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.76 Total: -2.26 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.06 Total: 50.18 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -63.00 3.72 -59.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097911472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.456 kcal (2) G-P(sol) polarization free energy of solvation -63.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds