Wall clock time and date at job start Tue Mar 31 2020 20:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00117 * 2 1 4 4 H 1.48495 * 109.47236 * 85.01889 * 3 2 1 5 5 H 1.48496 * 109.47243 * 325.01713 * 3 2 1 6 6 H 1.48507 * 109.46953 * 205.01967 * 3 2 1 7 7 C 1.38813 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99977 * 189.05207 * 7 2 1 9 9 N 1.36942 * 120.00127 * 9.05783 * 7 2 1 10 10 C 1.50241 * 130.83833 * 9.78063 * 9 7 2 11 11 H 1.09000 * 115.85556 * 0.39608 * 10 9 7 12 12 C 1.55845 * 101.05243 * 234.00866 * 10 9 7 13 13 C 1.54220 * 103.56198 * 327.14947 * 12 10 9 14 14 C 1.50232 * 130.84178 * 190.12422 * 9 7 2 15 15 H 1.09005 * 115.86055 * 359.60363 * 14 9 7 16 16 C 1.55840 * 101.05441 * 233.92880 * 14 9 7 17 17 H 1.09001 * 110.62898 * 208.56822 * 16 14 9 18 18 N 1.46500 * 110.62503 * 85.70769 * 16 14 9 19 19 C 1.34778 * 119.99820 * 155.00038 * 18 16 14 20 20 O 1.21544 * 120.00314 * 0.02562 * 19 18 16 21 21 C 1.47858 * 119.99822 * 180.02562 * 19 18 16 22 22 C 1.39569 * 120.12726 * 359.72421 * 21 19 18 23 23 C 1.38181 * 119.84975 * 179.72587 * 22 21 19 24 24 F 1.35102 * 119.94285 * 180.29661 * 23 22 21 25 25 C 1.38569 * 120.10669 * 0.57656 * 23 22 21 26 26 C 1.38403 * 120.25793 * 359.69876 * 25 23 22 27 27 Cl 1.73599 * 119.92714 * 180.02562 * 26 25 23 28 28 C 1.38112 * 120.14529 * 359.97438 * 26 25 23 29 29 C 1.54847 * 103.44438 * 327.06206 * 16 14 9 30 30 H 0.96994 * 119.99641 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.62554 * 85.55069 * 12 10 9 32 32 H 1.08993 * 110.62318 * 208.41220 * 12 10 9 33 33 H 1.09003 * 110.64283 * 241.43834 * 13 12 10 34 34 H 1.08997 * 110.49656 * 118.49743 * 13 12 10 35 35 H 0.96999 * 120.00269 * 335.00391 * 18 16 14 36 36 H 1.08004 * 120.07421 * 0.02562 * 22 21 19 37 37 H 1.08000 * 119.86645 * 179.72238 * 25 23 22 38 38 H 1.07997 * 120.05347 * 180.02562 * 28 26 25 39 39 H 1.08999 * 110.63181 * 118.48624 * 29 16 14 40 40 H 1.09000 * 110.62905 * 241.51040 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1072 1.3947 5 1 1.5044 2.6199 -0.8027 6 1 3.5965 1.4120 -0.5922 7 6 2.0102 -1.2022 0.0005 8 1 3.0802 -1.2080 0.1477 9 7 1.3383 -2.3808 -0.1856 10 6 -0.0814 -2.6478 -0.5983 11 1 -0.6937 -1.7671 -0.7920 12 6 -0.5597 -3.5751 0.5593 13 6 0.7112 -4.3601 0.9424 14 6 1.7919 -3.8049 -0.0336 15 1 2.8296 -3.9436 0.2701 16 6 1.4160 -4.3888 -1.4287 17 1 1.2005 -5.4547 -1.3535 18 7 2.4901 -4.1481 -2.3954 19 6 2.6275 -4.9561 -3.4653 20 8 1.8599 -5.8843 -3.6284 21 6 3.7119 -4.7134 -4.4406 22 6 4.5913 -3.6449 -4.2590 23 6 5.6062 -3.4268 -5.1710 24 9 6.4622 -2.3967 -4.9938 25 6 5.7439 -4.2595 -6.2701 26 6 4.8709 -5.3169 -6.4576 27 17 5.0517 -6.3551 -7.8372 28 6 3.8568 -5.5487 -5.5490 29 6 0.1410 -3.6006 -1.8172 30 1 -0.4849 0.8400 -0.0004 31 1 -0.9122 -2.9837 1.4043 32 1 -1.3415 -4.2505 0.2121 33 1 0.5648 -5.4288 0.7854 34 1 0.9877 -4.1573 1.9771 35 1 3.1025 -3.4071 -2.2654 36 1 4.4817 -2.9930 -3.4049 37 1 6.5358 -4.0827 -6.9828 38 1 3.1767 -6.3745 -5.6966 39 1 0.3066 -3.0280 -2.7298 40 1 -0.7068 -4.2755 -1.9347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097912654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:37 Heat of formation + Delta-G solvation = -16.343382 kcal Electronic energy + Delta-G solvation = -26807.317676 eV Core-core repulsion = 22756.540864 eV Total energy + Delta-G solvation = -4050.776812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.22130 -40.38305 -39.22749 -38.06251 -36.75166 -34.09011 -32.62899 -31.58551 -30.75363 -29.19081 -28.89784 -27.80273 -24.64129 -24.14215 -23.05777 -21.53574 -20.21199 -19.92511 -18.95471 -18.22284 -17.09791 -17.03158 -16.57207 -16.18049 -15.97993 -15.74707 -15.03767 -14.89971 -14.67859 -14.20901 -13.98364 -13.81296 -13.51731 -13.42251 -12.92896 -12.33908 -12.15396 -12.06584 -11.92488 -11.65470 -11.43352 -11.32498 -11.19782 -11.01372 -10.91081 -10.57838 -10.40274 -10.13855 -10.05720 -9.97465 -9.45846 -9.40969 -9.20832 -9.10140 -8.90552 -8.64657 -6.98932 -5.84559 -3.20819 0.31430 0.64055 1.60833 2.56578 3.28566 3.32178 3.37896 3.40003 3.48633 3.80865 4.34268 4.35882 4.52821 4.62766 4.71758 5.02158 5.06821 5.27951 5.33700 5.51308 5.58006 5.60475 5.66941 5.79795 5.82999 5.99466 6.01564 6.09457 6.19440 6.25705 6.35942 6.40101 6.54992 6.67208 6.75528 6.89029 7.00255 7.25659 7.42273 7.70243 7.76239 8.04867 8.34285 8.97711 9.62883 10.45721 11.27399 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.003445 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.187976 B = 8126.557007 C = 9788.672036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.590 5.590 10 C 0.161 3.839 11 H 0.141 0.859 12 C -0.134 4.134 13 C -0.127 4.127 14 C 0.123 3.877 15 H 0.089 0.911 16 C 0.128 3.872 17 H 0.084 0.916 18 N -0.695 5.695 19 C 0.554 3.446 20 O -0.539 6.539 21 C -0.084 4.084 22 C -0.116 4.116 23 C 0.111 3.889 24 F -0.127 7.127 25 C -0.129 4.129 26 C -0.017 4.017 27 Cl -0.052 7.052 28 C -0.065 4.065 29 C -0.147 4.147 30 H 0.254 0.746 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.403 0.597 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.059 0.941 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 -10.200 -10.262 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.311 5.311 10 C 0.054 3.946 11 H 0.158 0.842 12 C -0.173 4.173 13 C -0.167 4.167 14 C 0.015 3.985 15 H 0.107 0.893 16 C 0.022 3.978 17 H 0.102 0.898 18 N -0.344 5.344 19 C 0.339 3.661 20 O -0.417 6.417 21 C -0.087 4.087 22 C -0.136 4.136 23 C 0.091 3.909 24 F -0.106 7.106 25 C -0.148 4.148 26 C -0.044 4.044 27 Cl -0.023 7.023 28 C -0.084 4.084 29 C -0.187 4.187 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.239 0.761 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.077 0.923 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.261 -10.551 -10.427 16.979 hybrid contribution 0.968 1.400 0.009 1.702 sum 9.228 -9.151 -10.418 16.656 Atomic orbital electron populations 1.69675 1.05049 1.25248 1.55980 1.24758 0.95548 0.97624 1.02301 0.86129 0.78690 0.83546 0.77530 1.21665 1.21634 1.20625 1.18956 0.90769 0.82177 1.43020 0.90507 1.46563 1.08696 0.98585 1.77209 1.23512 0.87287 0.94969 0.88847 0.84233 1.22878 0.95662 0.97972 1.00777 1.22752 0.97104 0.97598 0.99261 1.23188 0.96519 0.87169 0.91644 0.89337 1.22742 0.86809 0.99056 0.89160 0.89774 1.45987 1.33364 1.31255 1.23831 1.17950 0.83838 0.82813 0.81493 1.90766 1.44592 1.31067 1.75311 1.19870 0.96711 0.95740 0.96411 1.21558 0.93814 0.98210 0.99980 1.17242 0.90550 0.87344 0.95768 1.91571 1.68189 1.55723 1.95078 1.21125 1.00906 0.94593 0.98210 1.20444 0.97755 0.94505 0.91715 1.98396 1.97139 1.65688 1.41085 1.21216 0.96303 0.99502 0.91412 1.23565 0.95701 0.98622 1.00803 0.93535 0.92271 0.93398 0.93012 0.92358 0.76092 0.83134 0.83248 0.82804 0.92255 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.02 10.75 55.49 0.60 -24.43 16 2 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 3 Si 0.91 20.86 29.56 -169.99 -5.03 15.84 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.22 -5.57 10.55 -15.06 -0.16 -5.73 16 8 H 0.08 1.86 7.84 -52.49 -0.41 1.45 16 9 N -0.59 -13.34 2.97 -145.55 -0.43 -13.77 16 10 C 0.16 3.50 4.65 -62.54 -0.29 3.20 16 11 H 0.14 3.51 5.89 -51.93 -0.31 3.21 16 12 C -0.13 -2.58 6.41 -24.57 -0.16 -2.74 16 13 C -0.13 -2.24 6.41 -24.57 -0.16 -2.39 16 14 C 0.12 2.28 5.06 -62.81 -0.32 1.96 16 15 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 16 C 0.13 2.23 2.80 -65.44 -0.18 2.05 16 17 H 0.08 1.46 7.22 -51.93 -0.38 1.09 16 18 N -0.70 -10.98 5.03 -52.34 -0.26 -11.25 16 19 C 0.55 8.61 7.77 -12.32 -0.10 8.51 16 20 O -0.54 -9.83 15.99 5.33 0.09 -9.74 16 21 C -0.08 -1.07 5.87 -104.98 -0.62 -1.68 16 22 C -0.12 -1.34 9.52 -39.11 -0.37 -1.71 16 23 C 0.11 1.20 7.29 -39.48 -0.29 0.91 16 24 F -0.13 -1.47 17.26 2.25 0.04 -1.43 16 25 C -0.13 -1.23 9.80 -39.40 -0.39 -1.61 16 26 C -0.02 -0.17 6.31 -39.57 -0.25 -0.42 16 27 Cl -0.05 -0.47 28.95 -51.86 -1.50 -1.97 16 28 C -0.06 -0.75 9.37 -39.14 -0.37 -1.11 16 29 C -0.15 -2.80 6.25 -23.98 -0.15 -2.95 16 30 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 33 H 0.05 0.79 7.82 -51.93 -0.41 0.39 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.40 6.06 6.69 -40.82 -0.27 5.79 16 36 H 0.15 1.66 6.40 -52.48 -0.34 1.32 16 37 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.15 1.77 7.65 -52.49 -0.40 1.37 16 39 H 0.06 1.20 7.98 -51.93 -0.41 0.79 16 40 H 0.06 1.02 7.83 -51.93 -0.41 0.62 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -28.16 349.33 -9.69 -37.84 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.56 Total: 7.60 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.89 Total: -3.95 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.10 Total: -49.45 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.16 -9.69 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097912654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.500 kcal (2) G-P(sol) polarization free energy of solvation -28.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds