Wall clock time and date at job start Tue Mar 31 2020 20:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00117 * 2 1 4 4 H 1.48495 * 109.47236 * 85.01889 * 3 2 1 5 5 H 1.48496 * 109.47243 * 325.01713 * 3 2 1 6 6 H 1.48507 * 109.46953 * 205.01967 * 3 2 1 7 7 C 1.38813 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99977 * 189.05207 * 7 2 1 9 9 N 1.36942 * 120.00127 * 9.05783 * 7 2 1 10 10 C 1.50241 * 130.83833 * 9.78063 * 9 7 2 11 11 H 1.09000 * 115.85556 * 0.39608 * 10 9 7 12 12 C 1.55845 * 101.05243 * 234.00866 * 10 9 7 13 13 C 1.54220 * 103.56198 * 327.14947 * 12 10 9 14 14 C 1.50232 * 130.84178 * 190.12422 * 9 7 2 15 15 H 1.09005 * 115.86055 * 359.60363 * 14 9 7 16 16 C 1.55840 * 101.05441 * 233.92880 * 14 9 7 17 17 H 1.09001 * 110.62898 * 208.56822 * 16 14 9 18 18 N 1.46500 * 110.62503 * 85.70769 * 16 14 9 19 19 C 1.34778 * 119.99820 * 155.00038 * 18 16 14 20 20 O 1.21544 * 120.00314 * 0.02562 * 19 18 16 21 21 C 1.47858 * 119.99822 * 180.02562 * 19 18 16 22 22 C 1.39569 * 120.12726 * 359.72421 * 21 19 18 23 23 C 1.38181 * 119.84975 * 179.72587 * 22 21 19 24 24 F 1.35102 * 119.94285 * 180.29661 * 23 22 21 25 25 C 1.38569 * 120.10669 * 0.57656 * 23 22 21 26 26 C 1.38403 * 120.25793 * 359.69876 * 25 23 22 27 27 Cl 1.73599 * 119.92714 * 180.02562 * 26 25 23 28 28 C 1.38112 * 120.14529 * 359.97438 * 26 25 23 29 29 C 1.54847 * 103.44438 * 327.06206 * 16 14 9 30 30 H 0.96994 * 119.99641 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.62554 * 85.55069 * 12 10 9 32 32 H 1.08993 * 110.62318 * 208.41220 * 12 10 9 33 33 H 1.09003 * 110.64283 * 241.43834 * 13 12 10 34 34 H 1.08997 * 110.49656 * 118.49743 * 13 12 10 35 35 H 0.96999 * 120.00269 * 335.00391 * 18 16 14 36 36 H 1.08004 * 120.07421 * 0.02562 * 22 21 19 37 37 H 1.08000 * 119.86645 * 179.72238 * 25 23 22 38 38 H 1.07997 * 120.05347 * 180.02562 * 28 26 25 39 39 H 1.08999 * 110.63181 * 118.48624 * 29 16 14 40 40 H 1.09000 * 110.62905 * 241.51040 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1072 1.3947 5 1 1.5044 2.6199 -0.8027 6 1 3.5965 1.4120 -0.5922 7 6 2.0102 -1.2022 0.0005 8 1 3.0802 -1.2080 0.1477 9 7 1.3383 -2.3808 -0.1856 10 6 -0.0814 -2.6478 -0.5983 11 1 -0.6937 -1.7671 -0.7920 12 6 -0.5597 -3.5751 0.5593 13 6 0.7112 -4.3601 0.9424 14 6 1.7919 -3.8049 -0.0336 15 1 2.8296 -3.9436 0.2701 16 6 1.4160 -4.3888 -1.4287 17 1 1.2005 -5.4547 -1.3535 18 7 2.4901 -4.1481 -2.3954 19 6 2.6275 -4.9561 -3.4653 20 8 1.8599 -5.8843 -3.6284 21 6 3.7119 -4.7134 -4.4406 22 6 4.5913 -3.6449 -4.2590 23 6 5.6062 -3.4268 -5.1710 24 9 6.4622 -2.3967 -4.9938 25 6 5.7439 -4.2595 -6.2701 26 6 4.8709 -5.3169 -6.4576 27 17 5.0517 -6.3551 -7.8372 28 6 3.8568 -5.5487 -5.5490 29 6 0.1410 -3.6006 -1.8172 30 1 -0.4849 0.8400 -0.0004 31 1 -0.9122 -2.9837 1.4043 32 1 -1.3415 -4.2505 0.2121 33 1 0.5648 -5.4288 0.7854 34 1 0.9877 -4.1573 1.9771 35 1 3.1025 -3.4071 -2.2654 36 1 4.4817 -2.9930 -3.4049 37 1 6.5358 -4.0827 -6.9828 38 1 3.1767 -6.3745 -5.6966 39 1 0.3066 -3.0280 -2.7298 40 1 -0.7068 -4.2755 -1.9347 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097912654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:36 Heat of formation + Delta-G solvation = -30.613475 kcal Electronic energy + Delta-G solvation = -26807.936474 eV Core-core repulsion = 22756.540864 eV Total energy + Delta-G solvation = -4051.395609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.09638 -41.60481 -40.52461 -39.23041 -37.55370 -35.46461 -34.45041 -32.56944 -31.63742 -30.97609 -30.39363 -29.27737 -26.19140 -25.46607 -23.96365 -22.82920 -21.57670 -21.45787 -20.42344 -19.39152 -18.81011 -18.08031 -17.43925 -17.22708 -17.02019 -16.85995 -16.72267 -16.03241 -15.94227 -15.71026 -15.46452 -15.07739 -14.55676 -14.42226 -14.29141 -13.76521 -13.66008 -13.23364 -12.97318 -12.89524 -12.86540 -12.81718 -12.67122 -12.44928 -12.18624 -12.08240 -11.93650 -11.89107 -11.73616 -11.39485 -11.10633 -10.75577 -10.75020 -10.32210 -9.99066 -9.95618 -8.83570 -7.79761 -5.15461 -0.59269 -0.22521 0.81314 1.49144 1.50653 1.54161 1.58228 2.09863 2.44274 2.51045 2.92375 3.35777 3.42005 3.45438 3.65468 3.77915 3.82190 3.98886 4.07965 4.13354 4.28170 4.43332 4.46263 4.50503 4.63244 4.66684 4.67730 4.83162 4.83686 4.89258 4.93500 5.09660 5.17268 5.20642 5.38245 5.39798 5.52675 5.57953 5.71307 5.89910 6.22226 6.50596 7.03786 7.10575 7.72352 8.60087 9.31226 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.003445 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.187976 B = 8126.557007 C = 9788.672036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.063 4.063 3 Si 0.967 3.033 4 H -0.294 1.294 5 H -0.302 1.302 6 H -0.267 1.267 7 C -0.217 4.217 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.147 3.853 11 H 0.101 0.899 12 C -0.127 4.127 13 C -0.120 4.120 14 C 0.125 3.875 15 H 0.104 0.896 16 C 0.141 3.859 17 H 0.094 0.906 18 N -0.695 5.695 19 C 0.557 3.443 20 O -0.568 6.568 21 C -0.097 4.097 22 C -0.114 4.114 23 C 0.106 3.894 24 F -0.131 7.131 25 C -0.111 4.111 26 C -0.017 4.017 27 Cl -0.039 7.039 28 C -0.064 4.064 29 C -0.136 4.136 30 H 0.245 0.755 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.407 0.593 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.152 0.848 39 H 0.040 0.960 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.695 -11.656 -11.230 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.257 4.257 3 Si 0.797 3.203 4 H -0.222 1.222 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.346 4.346 8 H 0.103 0.897 9 N -0.331 5.331 10 C 0.040 3.960 11 H 0.119 0.881 12 C -0.167 4.167 13 C -0.159 4.159 14 C 0.018 3.982 15 H 0.122 0.878 16 C 0.034 3.966 17 H 0.112 0.888 18 N -0.344 5.344 19 C 0.344 3.656 20 O -0.448 6.448 21 C -0.101 4.101 22 C -0.134 4.134 23 C 0.086 3.914 24 F -0.109 7.109 25 C -0.131 4.131 26 C -0.043 4.043 27 Cl -0.010 7.010 28 C -0.084 4.084 29 C -0.176 4.176 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.243 0.757 36 H 0.170 0.830 37 H 0.193 0.807 38 H 0.170 0.830 39 H 0.059 0.941 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.237 -12.035 -11.400 19.483 hybrid contribution 0.396 1.782 0.237 1.841 sum 10.633 -10.253 -11.163 18.514 Atomic orbital electron populations 1.69890 1.06262 1.24946 1.58170 1.25440 0.96207 1.00379 1.03627 0.85223 0.78065 0.80151 0.76849 1.22163 1.22869 1.19123 1.19319 0.91348 0.83227 1.40670 0.89676 1.46740 1.09185 0.99672 1.77477 1.23366 0.86886 0.94709 0.91013 0.88102 1.22783 0.97259 0.97775 0.98846 1.22714 0.95401 0.99086 0.98719 1.23386 0.97605 0.84724 0.92465 0.87837 1.22513 0.86343 0.98965 0.88755 0.88797 1.45922 1.33048 1.31569 1.23890 1.18265 0.83944 0.81961 0.81386 1.90744 1.45889 1.32242 1.75968 1.19564 0.96763 0.97119 0.96619 1.21551 0.93767 0.97780 1.00273 1.17261 0.90432 0.87597 0.96114 1.91567 1.68240 1.55953 1.95147 1.21369 1.00696 0.93268 0.97723 1.20425 0.97324 0.94788 0.91812 1.98407 1.97041 1.65308 1.40211 1.21238 0.96628 0.99174 0.91317 1.23421 0.97344 0.98179 0.98666 0.94586 0.94830 0.91031 0.89788 0.92628 0.75651 0.82963 0.80710 0.83016 0.94099 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.63 10.75 21.65 0.23 -53.40 16 2 C -0.06 -3.35 5.47 84.86 0.46 -2.89 16 3 Si 0.97 43.53 29.56 68.60 2.03 45.55 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.22 -10.90 10.55 84.03 0.89 -10.02 16 8 H 0.09 4.04 7.84 -2.91 -0.02 4.01 16 9 N -0.61 -27.45 2.97 -614.39 -1.83 -29.28 16 10 C 0.15 6.48 4.65 46.39 0.22 6.69 16 11 H 0.10 5.32 5.89 -2.39 -0.01 5.30 16 12 C -0.13 -4.84 6.41 31.99 0.21 -4.64 16 13 C -0.12 -3.95 6.41 31.99 0.21 -3.74 16 14 C 0.13 4.41 5.06 46.23 0.23 4.64 16 15 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 16 C 0.14 4.66 2.80 46.60 0.13 4.79 16 17 H 0.09 3.01 7.22 -2.39 -0.02 2.99 16 18 N -0.70 -21.12 5.03 -437.78 -2.20 -23.33 16 19 C 0.56 16.73 7.77 86.79 0.67 17.40 16 20 O -0.57 -20.12 15.99 -3.85 -0.06 -20.18 16 21 C -0.10 -2.35 5.87 -20.10 -0.12 -2.47 16 22 C -0.11 -2.46 9.52 22.58 0.21 -2.25 16 23 C 0.11 2.06 7.29 22.34 0.16 2.23 16 24 F -0.13 -2.75 17.26 44.97 0.78 -1.97 16 25 C -0.11 -1.81 9.80 22.39 0.22 -1.59 16 26 C -0.02 -0.29 6.31 22.28 0.14 -0.15 16 27 Cl -0.04 -0.61 28.95 -2.72 -0.08 -0.69 16 28 C -0.06 -1.37 9.37 22.55 0.21 -1.16 16 29 C -0.14 -5.12 6.25 32.37 0.20 -4.91 16 30 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 2.34 7.83 -2.39 -0.02 2.32 16 33 H 0.08 2.27 7.82 -2.39 -0.02 2.25 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.41 11.78 6.69 -92.71 -0.62 11.16 16 36 H 0.15 3.17 6.40 -2.91 -0.02 3.15 16 37 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.15 3.31 7.65 -2.91 -0.02 3.29 16 39 H 0.04 1.66 7.98 -2.39 -0.02 1.64 16 40 H 0.07 2.46 7.83 -2.39 -0.02 2.44 16 Total: -1.00 -61.11 349.33 3.39 -57.72 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.48 Total: 23.64 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.05 Total: 1.93 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.80 Total: -106.00 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.06 Total: -20.18 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -61.11 3.39 -57.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097912654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.104 kcal (2) G-P(sol) polarization free energy of solvation -61.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds