Wall clock time and date at job start Tue Mar 31 2020 21:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00243 * 2 1 4 4 C 1.53000 * 109.46769 * 293.95721 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99872 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 179.97438 * 6 5 4 9 9 S 1.80999 * 109.47324 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00237 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99945 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99810 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00234 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99877 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.46792 * 59.99928 * 14 12 10 16 16 H 1.48499 * 109.47117 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46848 * 300.00002 * 14 12 10 18 18 C 1.38723 * 111.00089 * 123.95455 * 2 1 3 19 19 N 1.32516 * 119.55065 * 235.77146 * 18 2 1 20 20 C 1.31672 * 121.80731 * 179.70723 * 19 18 2 21 21 C 1.39567 * 120.67862 * 0.56509 * 20 19 18 22 22 C 1.43203 * 120.47577 * 179.74600 * 21 20 19 23 23 N 6.68250 * 111.67833 * 122.85125 * 2 1 3 24 24 C 1.40359 * 119.04844 * 359.72915 * 21 20 19 25 25 C 1.38060 * 118.34757 * 359.97438 * 24 21 20 26 26 F 1.35103 * 120.39099 * 179.97438 * 25 24 21 27 27 H 1.08999 * 109.47439 * 60.00146 * 1 2 3 28 28 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46808 * 299.99830 * 1 2 3 30 30 H 1.09002 * 109.47401 * 173.95428 * 3 2 1 31 31 H 1.09001 * 109.46874 * 53.95440 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99524 * 4 3 2 33 33 H 1.08992 * 109.47399 * 59.99697 * 4 3 2 34 34 H 0.97005 * 120.00448 * 359.97438 * 5 4 3 35 35 H 1.08998 * 109.47224 * 300.00395 * 8 6 5 36 36 H 1.09002 * 109.47152 * 59.99840 * 8 6 5 37 37 H 0.97007 * 120.00127 * 179.97438 * 13 12 10 38 38 H 1.07996 * 119.65984 * 180.27227 * 20 19 18 39 39 H 1.07999 * 120.82952 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3185 6 6 1.9565 4.2236 -2.3855 7 8 1.3415 3.8102 -3.3454 8 6 2.4967 5.6305 -2.3855 9 16 2.0675 6.4416 -3.9457 10 6 2.8007 8.0217 -3.6810 11 1 3.3197 8.2282 -2.7566 12 6 2.7114 9.0010 -4.6604 13 7 2.0794 8.7492 -5.7872 14 14 3.4894 10.6761 -4.3801 15 1 4.9500 10.5139 -4.1670 16 1 3.2543 11.5360 -5.5677 17 1 2.8817 11.3099 -3.1825 18 6 1.9661 -0.7233 1.0742 19 7 2.8057 -0.1437 1.9199 20 6 3.3000 -0.7867 2.9573 21 6 2.9611 -2.1192 3.1968 22 6 3.5056 -2.8159 4.3232 23 7 3.9374 -3.3686 5.2168 24 6 2.0788 -2.7666 2.3179 25 6 1.5795 -2.0530 1.2466 26 9 0.7276 -2.6356 0.3747 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.0797 1.3444 0.1082 31 1 1.5611 1.9273 0.8309 32 1 2.0657 1.5015 -2.1492 33 1 0.5472 2.0844 -1.4265 34 1 2.6492 3.7555 -0.5508 35 1 2.0621 6.1866 -1.5549 36 1 3.5809 5.6034 -2.2768 37 1 2.0166 9.4338 -6.4716 38 1 3.9783 -0.2791 3.6270 39 1 1.7967 -3.7970 2.4761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099938904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:52 Heat of formation + Delta-G solvation = 7.376742 kcal Electronic energy + Delta-G solvation = -24618.942902 eV Core-core repulsion = 20603.531129 eV Total energy + Delta-G solvation = -4015.411773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.62733 -41.30959 -39.31346 -38.28617 -36.92797 -34.61539 -33.22106 -32.43405 -31.49956 -30.16643 -28.39236 -26.98905 -25.49844 -24.64267 -24.02387 -21.81447 -20.48897 -20.04217 -18.34451 -18.06691 -17.78837 -16.90103 -16.77083 -16.30822 -16.11882 -15.82837 -15.14191 -15.07331 -14.80875 -14.75058 -14.60226 -14.20677 -14.02806 -13.91375 -13.81034 -13.66939 -13.27219 -13.15077 -13.07956 -12.56653 -12.40606 -12.08918 -11.90328 -11.43302 -11.05201 -11.04168 -10.78653 -10.77436 -10.53884 -10.34151 -9.83431 -9.46377 -9.07089 -8.93964 -8.79921 -8.24994 -6.50824 -6.21989 -3.92840 -0.25083 0.24281 1.97843 2.14472 2.51720 2.99716 3.01406 3.06743 3.14254 3.23239 3.27657 3.31302 3.45813 3.54060 3.82090 3.90578 4.12789 4.20034 4.41005 4.59390 4.64820 4.82211 4.85379 4.88153 5.05463 5.13122 5.13839 5.19952 5.34683 5.48102 5.60692 5.61132 5.82209 5.87642 5.97852 6.12731 6.29435 6.54332 6.79231 7.02043 7.58730 7.64833 8.34491 8.57235 9.23212 10.85329 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.001706 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.637095 B =16407.337562 C =17370.387754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.468 5.468 3 C 0.052 3.948 4 C 0.120 3.880 5 N -0.738 5.738 6 C 0.534 3.466 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.325 3.675 19 N -0.493 5.493 20 C 0.181 3.819 21 C -0.089 4.089 22 C 0.259 3.741 23 N -0.403 5.403 24 C -0.038 4.038 25 C 0.033 3.967 26 F -0.115 7.115 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.177 0.823 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 -22.500 19.413 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.183 5.183 3 C -0.074 4.074 4 C -0.005 4.005 5 N -0.394 5.394 6 C 0.320 3.680 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C 0.090 3.910 19 N -0.206 5.206 20 C 0.019 3.981 21 C -0.096 4.096 22 C -0.057 4.057 23 N -0.079 5.079 24 C -0.066 4.066 25 C 0.009 3.991 26 F -0.093 7.093 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.194 0.806 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.103 -23.306 18.283 29.642 hybrid contribution 0.768 1.205 1.839 2.329 sum -0.335 -22.101 20.122 29.891 Atomic orbital electron populations 1.22892 0.82261 1.05174 1.03562 1.58671 1.10266 1.15680 1.33674 1.22304 1.02568 0.85054 0.97517 1.21216 0.99619 0.82722 0.96898 1.45860 1.59628 1.13353 1.20511 1.20299 0.79180 0.86845 0.81716 1.90709 1.39489 1.75125 1.33632 1.23529 1.04017 0.94887 1.07951 1.85403 1.73355 1.11004 1.13557 1.22828 1.41222 0.98493 1.05957 0.90947 1.24986 0.95140 0.98969 0.94435 1.70006 1.39686 1.34513 1.06064 0.86228 0.79550 0.81884 0.77856 1.19935 1.20811 1.19953 1.20198 0.92466 0.90077 0.88260 1.67887 1.12609 1.36540 1.03613 1.22871 0.93817 0.89100 0.92313 1.16634 1.03705 0.94936 0.94374 1.25139 0.93887 0.93892 0.92777 1.81329 1.08474 1.07661 1.10396 1.21496 0.93120 1.01066 0.90949 1.17718 0.97634 0.91352 0.92436 1.91519 1.67165 1.83551 1.67076 0.88441 0.88879 0.93248 0.88130 0.91794 0.90590 0.91378 0.76699 0.89164 0.89121 0.92119 0.80579 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 8.99 60.06 0.54 0.58 16 2 N -0.47 -3.54 4.72 -180.98 -0.86 -4.39 16 3 C 0.05 0.40 4.32 -3.82 -0.02 0.38 16 4 C 0.12 1.26 5.60 -4.04 -0.02 1.24 16 5 N -0.74 -9.02 5.56 -60.30 -0.33 -9.36 16 6 C 0.53 9.53 7.85 -10.98 -0.09 9.45 16 7 O -0.52 -11.39 15.86 5.56 0.09 -11.30 16 8 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 14 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.32 2.25 6.40 -155.04 -0.99 1.26 16 19 N -0.49 -3.14 8.56 -12.06 -0.10 -3.24 16 20 C 0.18 0.78 10.91 -17.12 -0.19 0.59 16 21 C -0.09 -0.39 5.75 -106.68 -0.61 -1.00 16 22 C 0.26 1.55 15.37 -22.47 -0.35 1.21 16 23 N -0.40 -3.51 18.54 41.84 0.78 -2.74 16 24 C -0.04 -0.15 9.88 -38.85 -0.38 -0.54 16 25 C 0.03 0.20 6.97 -39.16 -0.27 -0.08 16 26 F -0.11 -0.77 14.76 2.25 0.03 -0.74 16 27 H 0.10 0.62 6.47 -51.93 -0.34 0.28 16 28 H 0.09 0.53 5.58 -51.93 -0.29 0.24 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.79 7.50 -51.93 -0.39 0.40 16 31 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.74 6.55 -51.93 -0.34 0.40 16 34 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 36 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.18 0.33 8.06 -52.49 -0.42 -0.10 16 39 H 0.16 0.33 8.06 -52.49 -0.42 -0.10 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -35.74 363.35 -7.59 -43.33 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.20 Total: -1.68 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.96 Total: -2.48 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.22 Total: -44.93 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.03 Total: -0.74 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.74 -7.59 -43.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099938904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.702 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds