Wall clock time and date at job start Tue Mar 31 2020 21:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00243 * 2 1 4 4 C 1.53000 * 109.46769 * 293.95721 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99872 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 179.97438 * 6 5 4 9 9 S 1.80999 * 109.47324 * 179.97438 * 8 6 5 10 10 C 1.76198 * 100.00237 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99945 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99810 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00234 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99877 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.46792 * 59.99928 * 14 12 10 16 16 H 1.48499 * 109.47117 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46848 * 300.00002 * 14 12 10 18 18 C 1.38723 * 111.00089 * 123.95455 * 2 1 3 19 19 N 1.32516 * 119.55065 * 235.77146 * 18 2 1 20 20 C 1.31672 * 121.80731 * 179.70723 * 19 18 2 21 21 C 1.39567 * 120.67862 * 0.56509 * 20 19 18 22 22 C 1.43203 * 120.47577 * 179.74600 * 21 20 19 23 23 N 6.68250 * 111.67833 * 122.85125 * 2 1 3 24 24 C 1.40359 * 119.04844 * 359.72915 * 21 20 19 25 25 C 1.38060 * 118.34757 * 359.97438 * 24 21 20 26 26 F 1.35103 * 120.39099 * 179.97438 * 25 24 21 27 27 H 1.08999 * 109.47439 * 60.00146 * 1 2 3 28 28 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46808 * 299.99830 * 1 2 3 30 30 H 1.09002 * 109.47401 * 173.95428 * 3 2 1 31 31 H 1.09001 * 109.46874 * 53.95440 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99524 * 4 3 2 33 33 H 1.08992 * 109.47399 * 59.99697 * 4 3 2 34 34 H 0.97005 * 120.00448 * 359.97438 * 5 4 3 35 35 H 1.08998 * 109.47224 * 300.00395 * 8 6 5 36 36 H 1.09002 * 109.47152 * 59.99840 * 8 6 5 37 37 H 0.97007 * 120.00127 * 179.97438 * 13 12 10 38 38 H 1.07996 * 119.65984 * 180.27227 * 20 19 18 39 39 H 1.07999 * 120.82952 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3185 6 6 1.9565 4.2236 -2.3855 7 8 1.3415 3.8102 -3.3454 8 6 2.4967 5.6305 -2.3855 9 16 2.0675 6.4416 -3.9457 10 6 2.8007 8.0217 -3.6810 11 1 3.3197 8.2282 -2.7566 12 6 2.7114 9.0010 -4.6604 13 7 2.0794 8.7492 -5.7872 14 14 3.4894 10.6761 -4.3801 15 1 4.9500 10.5139 -4.1670 16 1 3.2543 11.5360 -5.5677 17 1 2.8817 11.3099 -3.1825 18 6 1.9661 -0.7233 1.0742 19 7 2.8057 -0.1437 1.9199 20 6 3.3000 -0.7867 2.9573 21 6 2.9611 -2.1192 3.1968 22 6 3.5056 -2.8159 4.3232 23 7 3.9374 -3.3686 5.2168 24 6 2.0788 -2.7666 2.3179 25 6 1.5795 -2.0530 1.2466 26 9 0.7276 -2.6356 0.3747 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.0797 1.3444 0.1082 31 1 1.5611 1.9273 0.8309 32 1 2.0657 1.5015 -2.1492 33 1 0.5472 2.0844 -1.4265 34 1 2.6492 3.7555 -0.5508 35 1 2.0621 6.1866 -1.5549 36 1 3.5809 5.6034 -2.2768 37 1 2.0166 9.4338 -6.4716 38 1 3.9783 -0.2791 3.6270 39 1 1.7967 -3.7970 2.4761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099938904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:51 Heat of formation + Delta-G solvation = -17.868984 kcal Electronic energy + Delta-G solvation = -24620.037639 eV Core-core repulsion = 20603.531129 eV Total energy + Delta-G solvation = -4016.506509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.07822 -41.76097 -40.59840 -38.93031 -37.50823 -35.74543 -34.55928 -33.63929 -32.25126 -31.18406 -29.38101 -27.72161 -27.47891 -25.18737 -24.52726 -22.50248 -21.81666 -20.49447 -19.81934 -18.77701 -18.58101 -17.71450 -17.35398 -17.30247 -16.96292 -16.85427 -16.83180 -16.17048 -15.89646 -15.46756 -15.25921 -15.20086 -14.80850 -14.73547 -14.60569 -14.40952 -14.28172 -14.17415 -13.76969 -13.62659 -13.49488 -13.14378 -12.99044 -12.84540 -12.62297 -12.50439 -12.29250 -11.72568 -11.23600 -11.10583 -11.02905 -10.92090 -10.77505 -10.24829 -10.11258 -9.27354 -8.63887 -8.32101 -6.10029 -0.66941 -0.11887 1.28025 1.45833 1.47869 1.50140 1.57084 1.63618 1.69273 1.98192 2.29795 2.45536 2.58411 2.70110 3.02045 3.03616 3.18928 3.36231 3.59488 3.69271 3.76906 3.99290 4.05887 4.14258 4.33765 4.36701 4.37495 4.47021 4.52698 4.55524 4.69842 4.82037 4.88474 4.97248 5.16761 5.33841 5.44275 5.48980 5.79035 6.22089 6.33050 6.51550 6.59939 7.09238 7.26231 8.76734 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.001706 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.637095 B =16407.337562 C =17370.387754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.482 5.482 3 C 0.067 3.933 4 C 0.123 3.877 5 N -0.710 5.710 6 C 0.536 3.464 7 O -0.565 6.565 8 C -0.129 4.129 9 S -0.153 6.153 10 C -0.547 4.547 11 H 0.084 0.916 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.315 3.685 19 N -0.506 5.506 20 C 0.190 3.810 21 C -0.085 4.085 22 C 0.289 3.711 23 N -0.451 5.451 24 C -0.022 4.022 25 C 0.022 3.978 26 F -0.122 7.122 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.271 0.729 38 H 0.202 0.798 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.116 -22.399 21.949 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.197 5.197 3 C -0.059 4.059 4 C -0.002 4.002 5 N -0.365 5.365 6 C 0.321 3.679 7 O -0.444 6.444 8 C -0.280 4.280 9 S 0.074 5.926 10 C -0.695 4.695 11 H 0.102 0.898 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.187 1.187 16 H -0.205 1.205 17 H -0.186 1.186 18 C 0.081 3.919 19 N -0.220 5.220 20 C 0.028 3.972 21 C -0.093 4.093 22 C -0.027 4.027 23 N -0.127 5.127 24 C -0.050 4.050 25 C -0.003 4.003 26 F -0.101 7.101 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.256 0.744 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.219 0.781 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.005 -23.234 20.884 31.240 hybrid contribution 0.428 1.035 1.144 1.601 sum 0.423 -22.199 22.028 31.276 Atomic orbital electron populations 1.22903 0.81742 1.05488 1.03680 1.58642 1.10909 1.15449 1.34697 1.22104 1.02742 0.85326 0.95772 1.21270 0.99271 0.81390 0.98243 1.45542 1.58219 1.13383 1.19344 1.20035 0.78823 0.86686 0.82323 1.90700 1.41964 1.75863 1.35825 1.23369 1.05407 0.95431 1.03835 1.85590 1.74428 1.12665 1.19886 1.23186 1.41126 0.98675 1.06499 0.89790 1.26114 0.95508 1.03535 0.93954 1.70178 1.41331 1.36025 1.07234 0.85018 0.78874 0.76118 0.78074 1.18682 1.20520 1.18634 1.20252 0.92894 0.90391 0.88383 1.67914 1.12917 1.36956 1.04168 1.23266 0.93202 0.89006 0.91738 1.16566 1.03847 0.94955 0.93886 1.25158 0.92613 0.92743 0.92151 1.81371 1.10161 1.09189 1.11943 1.21683 0.91828 1.01812 0.89708 1.17769 0.98247 0.91247 0.93038 1.91501 1.67506 1.83619 1.67454 0.89031 0.88548 0.92336 0.87876 0.90554 0.92200 0.91628 0.74421 0.86951 0.87068 0.92037 0.78110 0.80142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 8.99 127.69 1.15 1.22 16 2 N -0.48 -6.63 4.72 -726.50 -3.43 -10.06 16 3 C 0.07 0.90 4.32 86.30 0.37 1.28 16 4 C 0.12 2.45 5.60 86.38 0.48 2.93 16 5 N -0.71 -16.09 5.56 -463.07 -2.57 -18.66 16 6 C 0.54 18.79 7.85 87.66 0.69 19.48 16 7 O -0.57 -25.49 15.86 -3.01 -0.05 -25.54 16 8 C -0.13 -4.89 6.16 71.24 0.44 -4.46 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 10 C -0.55 -30.78 9.50 67.95 0.65 -30.14 16 11 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 12 C 0.01 0.77 5.49 84.86 0.47 1.24 16 13 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 14 Si 1.00 43.01 29.55 68.60 2.03 45.03 16 15 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 18 C 0.31 3.78 6.40 133.22 0.85 4.64 16 19 N -0.51 -5.19 8.56 -192.06 -1.64 -6.83 16 20 C 0.19 1.10 10.91 85.04 0.93 2.03 16 21 C -0.09 -0.52 5.75 -21.20 -0.12 -0.64 16 22 C 0.29 2.89 15.37 88.33 1.36 4.25 16 23 N -0.45 -7.31 18.54 19.00 0.35 -6.95 16 24 C -0.02 -0.13 9.88 22.74 0.22 0.10 16 25 C 0.02 0.22 6.97 22.54 0.16 0.37 16 26 F -0.12 -1.50 14.76 44.97 0.66 -0.84 16 27 H 0.09 1.12 6.47 -2.39 -0.02 1.11 16 28 H 0.10 1.02 5.58 -2.39 -0.01 1.01 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.10 1.37 7.50 -2.39 -0.02 1.35 16 31 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.39 6.55 -2.39 -0.02 1.38 16 34 H 0.42 6.40 8.47 -92.70 -0.79 5.61 16 35 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 36 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 38 H 0.20 0.07 8.06 -2.91 -0.02 0.05 16 39 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -79.99 363.35 2.45 -77.54 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.34 Total: 8.83 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 7.64 Total: 2.30 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -7.01 Total: -97.81 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.66 Total: -0.84 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -79.99 2.45 -77.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099938904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.671 kcal (2) G-P(sol) polarization free energy of solvation -79.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds