Wall clock time and date at job start Tue Mar 31 2020 21:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00024 * 3 2 1 5 5 N 1.46499 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.38717 * 120.00014 * 180.02562 * 5 4 3 7 7 N 1.32514 * 119.55265 * 359.73170 * 6 5 4 8 8 C 1.31677 * 121.81093 * 179.70737 * 7 6 5 9 9 C 1.39565 * 120.67769 * 0.56688 * 8 7 6 10 10 C 1.43204 * 120.47544 * 179.74740 * 9 8 7 11 11 N 9.87909 * 109.69454 * 51.70829 * 2 1 3 12 12 C 1.40357 * 119.04416 * 359.72243 * 9 8 7 13 13 C 1.38055 * 118.35654 * 359.97438 * 12 9 8 14 14 F 1.35102 * 120.39383 * 179.97438 * 13 12 9 15 15 C 1.34781 * 119.99832 * 180.02562 * 2 1 3 16 16 O 1.21281 * 120.00142 * 180.02562 * 15 2 1 17 17 C 1.50703 * 120.00021 * 359.97438 * 15 2 1 18 18 S 1.80999 * 109.47324 * 180.02562 * 17 15 2 19 19 C 1.76197 * 100.00030 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99974 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99810 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00042 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47085 * 60.00426 * 23 21 19 25 25 H 1.48501 * 109.47035 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47268 * 300.00100 * 23 21 19 27 27 H 1.08996 * 109.47253 * 89.99251 * 1 2 3 28 28 H 1.08999 * 109.47380 * 210.00276 * 1 2 3 29 29 H 1.09001 * 109.46721 * 329.99669 * 1 2 3 30 30 H 1.09001 * 109.46813 * 330.00298 * 3 2 1 31 31 H 1.08992 * 109.47397 * 210.00360 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00326 * 4 3 2 33 33 H 1.09001 * 109.47194 * 60.00507 * 4 3 2 34 34 H 0.97000 * 120.00420 * 0.02562 * 5 4 3 35 35 H 1.08005 * 119.66186 * 180.26777 * 8 7 6 36 36 H 1.08002 * 120.82369 * 180.02562 * 12 9 8 37 37 H 1.08997 * 109.47209 * 300.00559 * 17 15 2 38 38 H 1.09001 * 109.47189 * 59.99732 * 17 15 2 39 39 H 0.97002 * 119.99530 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1857 2.9786 1.4425 6 6 3.5331 3.5789 2.6439 7 7 3.1927 3.0001 3.7862 8 6 3.5045 3.5278 4.9517 9 6 4.2019 4.7346 5.0232 10 6 4.5340 5.3073 6.2930 11 7 4.7943 5.7636 7.3002 12 6 4.5736 5.3784 3.8327 13 6 4.2319 4.7868 2.6330 14 9 4.5686 5.3711 1.4623 15 6 2.1389 -1.1673 -0.0005 16 8 3.3517 -1.1673 -0.0001 17 6 1.3854 -2.4724 -0.0005 18 16 2.5615 -3.8482 -0.0005 19 6 1.4413 -5.2082 0.0003 20 1 0.3761 -5.0305 0.0001 21 6 1.9280 -6.5081 -0.0001 22 7 3.2264 -6.7247 -0.0004 23 14 0.7404 -7.9500 0.0015 24 1 -0.1159 -7.8873 -1.2101 25 1 1.5065 -9.2222 0.0015 26 1 -0.1133 -7.8869 1.2148 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6085 2.0283 -0.5138 31 1 3.1499 1.1383 -0.5138 32 1 1.5002 1.8406 1.9564 33 1 3.0417 0.9506 1.9563 34 1 3.4282 3.3987 0.6025 35 1 3.2133 3.0241 5.8616 36 1 5.1143 6.3131 3.8545 37 1 0.7590 -2.5303 0.8896 38 1 0.7583 -2.5299 -0.8903 39 1 3.5665 -7.6332 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101514584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:48 Heat of formation + Delta-G solvation = -2.314218 kcal Electronic energy + Delta-G solvation = -24727.663055 eV Core-core repulsion = 20711.831051 eV Total energy + Delta-G solvation = -4015.832004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.36312 -40.77367 -39.64049 -37.40244 -36.45801 -35.21359 -32.87221 -32.45607 -31.72754 -29.89244 -28.19188 -26.55214 -25.52738 -24.55829 -24.25315 -22.59147 -19.78522 -19.54360 -18.49550 -17.90428 -17.72126 -16.74200 -16.68814 -16.43581 -16.07340 -15.71447 -15.11829 -14.96489 -14.82965 -14.72819 -14.40579 -13.98027 -13.90429 -13.58640 -13.47767 -13.42640 -13.29786 -13.02916 -12.71451 -12.59138 -12.48072 -12.40307 -11.87231 -11.78787 -11.07597 -11.06086 -10.79786 -10.65519 -10.26095 -10.23076 -9.85187 -9.50545 -9.08614 -8.74441 -8.27477 -8.24521 -6.53983 -6.24290 -3.95517 0.19492 0.51331 2.23872 2.32604 2.51552 2.91661 2.96855 3.21492 3.23596 3.27205 3.34340 3.37360 3.54532 3.59974 3.86443 4.17456 4.18395 4.41921 4.59242 4.64101 4.83644 5.00367 5.02006 5.10850 5.13042 5.16371 5.30156 5.33933 5.49992 5.61120 5.63775 5.69841 5.82018 5.86833 6.07632 6.35139 6.51400 6.66410 7.08890 7.35973 7.47764 7.56484 8.32037 8.42275 9.20895 10.83022 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.017735 B = 0.001951 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.418606 B =14347.747052 C =15126.711274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.622 5.622 3 C 0.106 3.894 4 C 0.110 3.890 5 N -0.700 5.700 6 C 0.416 3.584 7 N -0.514 5.514 8 C 0.208 3.792 9 C -0.130 4.130 10 C 0.267 3.733 11 N -0.419 5.419 12 C -0.017 4.017 13 C -0.023 4.023 14 F -0.129 7.129 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.416 0.584 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 24.802 3.303 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.018 4.018 4 C -0.014 4.014 5 N -0.329 5.329 6 C 0.176 3.824 7 N -0.231 5.231 8 C 0.046 3.954 9 C -0.139 4.139 10 C -0.049 4.049 11 N -0.095 5.095 12 C -0.045 4.045 13 C -0.050 4.050 14 F -0.108 7.108 15 C 0.322 3.678 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.253 0.747 35 H 0.192 0.808 36 H 0.173 0.827 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.518 24.375 4.699 24.951 hybrid contribution -1.728 -0.026 -0.909 1.953 sum -4.246 24.349 3.790 25.005 Atomic orbital electron populations 1.21818 0.79155 1.03383 1.02001 1.47729 1.06977 1.05027 1.76122 1.21430 0.99031 0.86004 0.95368 1.21876 0.96953 0.84306 0.98302 1.44526 1.59375 1.24510 1.04525 1.18588 0.88727 0.87142 0.87991 1.67484 1.25413 1.33695 0.96525 1.22747 0.88199 0.89121 0.95371 1.16455 1.11234 0.99358 0.86903 1.25171 0.93545 0.93687 0.92494 1.81300 1.09201 1.08192 1.10774 1.21314 0.94869 0.99253 0.89094 1.17615 1.09165 0.95557 0.82613 1.91515 1.91093 1.83436 1.44741 1.20437 0.87973 0.84568 0.74858 1.90711 1.13708 1.86698 1.47322 1.23559 1.04620 0.97047 1.04858 1.85412 1.07958 0.93330 1.96726 1.22808 0.94258 0.92181 1.59196 0.90951 1.24994 0.95686 0.98388 0.94498 1.70009 1.11750 1.21805 1.46664 0.86223 0.80178 0.80291 0.78804 1.19938 1.20809 1.19913 0.92486 0.90348 0.91289 0.90194 0.89103 0.90834 0.90069 0.74687 0.80793 0.82739 0.89069 0.89157 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.24 59.85 0.61 1.29 16 2 N -0.62 -7.50 2.87 -181.57 -0.52 -8.02 16 3 C 0.11 1.00 5.52 -4.04 -0.02 0.98 16 4 C 0.11 1.03 6.00 -4.04 -0.02 1.01 16 5 N -0.70 -5.51 5.69 -60.36 -0.34 -5.86 16 6 C 0.42 3.51 7.48 -155.05 -1.16 2.35 16 7 N -0.51 -4.57 9.53 -12.06 -0.11 -4.68 16 8 C 0.21 1.40 10.91 -17.12 -0.19 1.21 16 9 C -0.13 -0.84 5.75 -106.68 -0.61 -1.45 16 10 C 0.27 2.14 15.37 -22.47 -0.35 1.80 16 11 N -0.42 -4.44 18.54 41.84 0.78 -3.67 16 12 C -0.02 -0.10 9.88 -38.85 -0.38 -0.49 16 13 C -0.02 -0.16 7.34 -39.16 -0.29 -0.45 16 14 F -0.13 -0.97 16.62 2.25 0.04 -0.93 16 15 C 0.53 9.31 7.69 -10.98 -0.08 9.23 16 16 O -0.51 -10.88 15.44 5.56 0.09 -10.79 16 17 C -0.15 -2.88 4.71 36.01 0.17 -2.71 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.76 13.22 55.49 0.73 -25.02 16 23 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.71 6.44 -51.93 -0.33 0.37 16 29 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.42 2.54 7.92 -40.82 -0.32 2.22 16 35 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.09 1.60 7.40 -51.92 -0.38 1.22 16 38 H 0.09 1.60 8.11 -51.92 -0.42 1.18 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -35.34 369.33 -7.49 -42.83 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.34 Total: -1.71 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.13 Total: 0.13 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.53 Total: -47.25 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.34 -7.49 -42.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101514584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.520 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds