Wall clock time and date at job start Tue Mar 31 2020 21:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00024 * 3 2 1 5 5 N 1.46499 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.38717 * 120.00014 * 180.02562 * 5 4 3 7 7 N 1.32514 * 119.55265 * 359.73170 * 6 5 4 8 8 C 1.31677 * 121.81093 * 179.70737 * 7 6 5 9 9 C 1.39565 * 120.67769 * 0.56688 * 8 7 6 10 10 C 1.43204 * 120.47544 * 179.74740 * 9 8 7 11 11 N 9.87909 * 109.69454 * 51.70829 * 2 1 3 12 12 C 1.40357 * 119.04416 * 359.72243 * 9 8 7 13 13 C 1.38055 * 118.35654 * 359.97438 * 12 9 8 14 14 F 1.35102 * 120.39383 * 179.97438 * 13 12 9 15 15 C 1.34781 * 119.99832 * 180.02562 * 2 1 3 16 16 O 1.21281 * 120.00142 * 180.02562 * 15 2 1 17 17 C 1.50703 * 120.00021 * 359.97438 * 15 2 1 18 18 S 1.80999 * 109.47324 * 180.02562 * 17 15 2 19 19 C 1.76197 * 100.00030 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99974 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99810 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00042 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47085 * 60.00426 * 23 21 19 25 25 H 1.48501 * 109.47035 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47268 * 300.00100 * 23 21 19 27 27 H 1.08996 * 109.47253 * 89.99251 * 1 2 3 28 28 H 1.08999 * 109.47380 * 210.00276 * 1 2 3 29 29 H 1.09001 * 109.46721 * 329.99669 * 1 2 3 30 30 H 1.09001 * 109.46813 * 330.00298 * 3 2 1 31 31 H 1.08992 * 109.47397 * 210.00360 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00326 * 4 3 2 33 33 H 1.09001 * 109.47194 * 60.00507 * 4 3 2 34 34 H 0.97000 * 120.00420 * 0.02562 * 5 4 3 35 35 H 1.08005 * 119.66186 * 180.26777 * 8 7 6 36 36 H 1.08002 * 120.82369 * 180.02562 * 12 9 8 37 37 H 1.08997 * 109.47209 * 300.00559 * 17 15 2 38 38 H 1.09001 * 109.47189 * 59.99732 * 17 15 2 39 39 H 0.97002 * 119.99530 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1857 2.9786 1.4425 6 6 3.5331 3.5789 2.6439 7 7 3.1927 3.0001 3.7862 8 6 3.5045 3.5278 4.9517 9 6 4.2019 4.7346 5.0232 10 6 4.5340 5.3073 6.2930 11 7 4.7943 5.7636 7.3002 12 6 4.5736 5.3784 3.8327 13 6 4.2319 4.7868 2.6330 14 9 4.5686 5.3711 1.4623 15 6 2.1389 -1.1673 -0.0005 16 8 3.3517 -1.1673 -0.0001 17 6 1.3854 -2.4724 -0.0005 18 16 2.5615 -3.8482 -0.0005 19 6 1.4413 -5.2082 0.0003 20 1 0.3761 -5.0305 0.0001 21 6 1.9280 -6.5081 -0.0001 22 7 3.2264 -6.7247 -0.0004 23 14 0.7404 -7.9500 0.0015 24 1 -0.1159 -7.8873 -1.2101 25 1 1.5065 -9.2222 0.0015 26 1 -0.1133 -7.8869 1.2148 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6085 2.0283 -0.5138 31 1 3.1499 1.1383 -0.5138 32 1 1.5002 1.8406 1.9564 33 1 3.0417 0.9506 1.9563 34 1 3.4282 3.3987 0.6025 35 1 3.2133 3.0241 5.8616 36 1 5.1143 6.3131 3.8545 37 1 0.7590 -2.5303 0.8896 38 1 0.7583 -2.5299 -0.8903 39 1 3.5665 -7.6332 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101514584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:48 Heat of formation + Delta-G solvation = -25.720415 kcal Electronic energy + Delta-G solvation = -24728.678024 eV Core-core repulsion = 20711.831051 eV Total energy + Delta-G solvation = -4016.846973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.92759 -41.38009 -40.84453 -38.14136 -37.30571 -36.18971 -34.56731 -33.47126 -32.55131 -30.94444 -29.16991 -27.67429 -27.35220 -25.21254 -24.95531 -23.34981 -20.75287 -20.38516 -19.61063 -19.13939 -18.53224 -17.99662 -17.26590 -17.14448 -17.00369 -16.86534 -16.80222 -15.88167 -15.80235 -15.74547 -15.43269 -15.09702 -14.55712 -14.53850 -14.34738 -14.28099 -14.14841 -14.08560 -14.04144 -13.53866 -13.33540 -13.20877 -13.14349 -12.95044 -12.83672 -12.66840 -12.49225 -11.72532 -11.31953 -11.11224 -10.94440 -10.82693 -10.80488 -10.24707 -9.76475 -8.86419 -8.65337 -8.32977 -6.11028 -0.38885 -0.01293 1.25351 1.44552 1.45152 1.53273 1.57440 1.58818 1.79610 1.88079 2.27668 2.32445 2.74873 2.75883 3.01160 3.02296 3.26899 3.31167 3.70753 3.71822 3.86471 3.88362 4.08467 4.24411 4.30379 4.37344 4.42382 4.51873 4.59954 4.72654 4.81141 4.82119 4.92609 5.00709 5.22810 5.43224 5.52839 5.80117 6.09727 6.20784 6.24078 6.45113 6.90765 7.08309 7.13962 8.75836 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.017735 B = 0.001951 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.418606 B =14347.747052 C =15126.711274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.107 3.893 4 C 0.125 3.875 5 N -0.698 5.698 6 C 0.405 3.595 7 N -0.538 5.538 8 C 0.211 3.789 9 C -0.126 4.126 10 C 0.294 3.706 11 N -0.463 5.463 12 C -0.004 4.004 13 C -0.027 4.027 14 F -0.130 7.130 15 C 0.531 3.469 16 O -0.561 6.561 17 C -0.124 4.124 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.262 1.262 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.424 0.576 35 H 0.195 0.805 36 H 0.178 0.822 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 26.230 3.117 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.016 4.016 4 C 0.000 4.000 5 N -0.329 5.329 6 C 0.165 3.835 7 N -0.256 5.256 8 C 0.049 3.951 9 C -0.136 4.136 10 C -0.021 4.021 11 N -0.140 5.140 12 C -0.032 4.032 13 C -0.054 4.054 14 F -0.109 7.109 15 C 0.319 3.681 16 O -0.439 6.439 17 C -0.275 4.275 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.186 1.186 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.263 0.737 35 H 0.211 0.789 36 H 0.195 0.805 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.129 25.866 4.509 26.753 hybrid contribution -0.968 -0.304 -0.849 1.323 sum -6.097 25.563 3.661 26.534 Atomic orbital electron populations 1.22155 0.76391 1.04986 1.03638 1.47679 1.08618 1.04164 1.73661 1.21608 0.98842 0.85482 0.95715 1.21566 0.96747 0.83994 0.97684 1.44420 1.59495 1.23964 1.04971 1.18770 0.89079 0.87643 0.88020 1.67511 1.26436 1.34456 0.97175 1.23069 0.87461 0.89066 0.95491 1.16383 1.11437 0.99342 0.86390 1.25196 0.92235 0.92503 0.92131 1.81335 1.10847 1.09727 1.12079 1.21531 0.93779 0.99654 0.88248 1.17587 1.09435 0.95378 0.82956 1.91514 1.91141 1.83397 1.44871 1.20174 0.87271 0.85570 0.75102 1.90695 1.15669 1.87440 1.50136 1.23382 1.02714 0.94914 1.06516 1.85594 1.12717 0.97409 1.97037 1.23164 0.94668 0.92620 1.58832 0.89795 1.26129 0.97566 1.01723 0.93797 1.70184 1.14122 1.22472 1.48012 0.85016 0.77634 0.75894 0.79541 1.18584 1.20588 1.18609 0.90757 0.90721 0.87856 0.85818 0.91034 0.89785 0.93976 0.73728 0.78860 0.80452 0.87268 0.87342 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.24 127.77 1.31 2.25 16 2 N -0.61 -13.50 2.87 -846.75 -2.43 -15.94 16 3 C 0.11 1.83 5.52 86.38 0.48 2.30 16 4 C 0.13 2.21 6.00 86.38 0.52 2.73 16 5 N -0.70 -10.18 5.69 -344.87 -1.96 -12.14 16 6 C 0.41 6.37 7.48 133.23 1.00 7.36 16 7 N -0.54 -9.01 9.53 -192.05 -1.83 -10.84 16 8 C 0.21 2.54 10.91 85.04 0.93 3.47 16 9 C -0.13 -1.41 5.75 -21.20 -0.12 -1.53 16 10 C 0.29 4.34 15.37 88.33 1.36 5.70 16 11 N -0.46 -9.49 18.54 19.00 0.35 -9.14 16 12 C 0.00 -0.04 9.88 22.74 0.22 0.18 16 13 C -0.03 -0.35 7.34 22.54 0.17 -0.18 16 14 F -0.13 -1.75 16.62 44.97 0.75 -1.00 16 15 C 0.53 18.50 7.69 87.66 0.67 19.17 16 16 O -0.56 -24.84 15.44 -3.03 -0.05 -24.89 16 17 C -0.12 -4.71 4.71 71.24 0.34 -4.37 16 18 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 19 C -0.55 -30.54 9.50 67.95 0.65 -29.89 16 20 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 21 C 0.01 0.71 5.49 84.86 0.47 1.17 16 22 N -0.91 -55.56 13.22 21.65 0.29 -55.28 16 23 Si 1.00 42.87 29.55 68.60 2.03 44.90 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.11 6.44 -2.39 -0.02 1.09 16 29 H 0.10 0.76 8.07 -2.39 -0.02 0.74 16 30 H 0.12 1.10 8.07 -2.39 -0.02 1.08 16 31 H 0.07 1.56 7.42 -2.39 -0.02 1.54 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.42 4.59 7.92 -92.71 -0.73 3.85 16 35 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.11 3.72 7.40 -2.40 -0.02 3.70 16 38 H 0.11 3.69 8.11 -2.39 -0.02 3.67 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -80.87 369.33 4.33 -76.54 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.38 Total: 9.03 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 7.98 Total: 8.36 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -5.59 Total: -103.33 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.89 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.75 Total: -1.00 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -80.87 4.33 -76.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101514584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.815 kcal (2) G-P(sol) polarization free energy of solvation -80.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds