Wall clock time and date at job start Tue Mar 31 2020 20:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48497 * 109.46649 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47023 * 300.00336 * 3 2 1 6 6 H 1.48496 * 109.46808 * 60.00380 * 3 2 1 7 7 C 1.38800 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99616 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00117 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47309 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99506 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99842 * 180.02562 * 11 10 9 14 14 C 1.47857 * 126.92978 * 0.02562 * 13 11 10 15 15 C 1.56023 * 105.11508 * 181.90421 * 14 13 11 16 16 H 1.08997 * 116.26490 * 158.85434 * 15 14 13 17 17 C 1.57084 * 99.59679 * 32.80451 * 15 14 13 18 18 C 1.49280 * 126.92378 * 179.70892 * 13 11 10 19 19 H 1.09006 * 116.12520 * 16.88941 * 18 13 11 20 20 C 1.56011 * 104.12955 * 246.92439 * 18 13 11 21 21 N 1.47815 * 105.10773 * 288.64533 * 20 18 13 22 22 C 1.38571 * 110.72124 * 122.75556 * 21 20 18 23 23 C 1.39473 * 120.50875 * 176.25088 * 22 21 20 24 24 C 1.38471 * 118.31038 * 180.02562 * 23 22 21 25 25 F 1.35090 * 120.43327 * 180.02562 * 24 23 22 26 26 N 1.32792 * 119.13493 * 0.02562 * 24 23 22 27 27 C 1.31758 * 120.96979 * 0.02562 * 26 24 23 28 28 N 1.31766 * 121.85476 * 359.71121 * 27 26 24 29 29 H 0.96997 * 120.00145 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47238 * 60.00255 * 10 9 7 31 31 H 1.08997 * 109.47423 * 299.99953 * 10 9 7 32 32 H 1.09000 * 110.31483 * 300.80838 * 14 13 11 33 33 H 1.08994 * 110.31304 * 62.99257 * 14 13 11 34 34 H 1.09000 * 112.35862 * 64.34040 * 17 15 14 35 35 H 1.09004 * 112.35724 * 191.66484 * 17 15 14 36 36 H 1.09001 * 110.32249 * 47.69355 * 20 18 13 37 37 H 1.09002 * 110.32327 * 169.80046 * 20 18 13 38 38 H 1.07997 * 120.84697 * 359.97438 * 23 22 21 39 39 H 1.07994 * 119.07570 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0037 14 6 4.3214 -6.2774 -0.0032 15 6 4.7947 -7.7632 -0.0545 16 1 5.8092 -7.9341 -0.4144 17 6 3.6326 -8.3787 -0.9138 18 6 2.4932 -7.7940 0.0015 19 1 1.4690 -8.0410 -0.2781 20 6 2.9856 -8.3000 1.3927 21 7 4.4610 -8.2988 1.3030 22 6 5.0121 -7.5076 2.2982 23 6 6.3958 -7.4236 2.4511 24 6 6.8974 -6.6198 3.4609 25 9 8.2306 -6.5066 3.6470 26 7 6.0507 -5.9616 4.2441 27 6 4.7484 -6.0646 4.0724 28 7 4.2296 -6.8141 3.1209 29 1 -0.4850 0.8400 0.0004 30 1 3.1252 -3.7317 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 4.6764 -5.7368 -0.8806 33 1 4.6785 -5.7977 0.9080 34 1 3.6051 -7.9732 -1.9251 35 1 3.6481 -9.4687 -0.9120 36 1 2.6518 -7.6251 2.1808 37 1 2.6196 -9.3096 1.5795 38 1 7.0593 -7.9721 1.7989 39 1 4.0877 -5.5155 4.7267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102537165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:20 Heat of formation + Delta-G solvation = 37.947502 kcal Electronic energy + Delta-G solvation = -26978.036301 eV Core-core repulsion = 22963.950176 eV Total energy + Delta-G solvation = -4014.086125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.53234 -42.32798 -40.50807 -38.31984 -35.18604 -33.14766 -32.46185 -32.36725 -30.28050 -30.23277 -28.59172 -25.71538 -25.49962 -24.79631 -23.89142 -21.72995 -21.18355 -19.42495 -18.75907 -18.33027 -17.70097 -17.00493 -16.82763 -16.63136 -16.09598 -15.89141 -15.30002 -15.06969 -14.83362 -14.70139 -14.38221 -14.19588 -13.89233 -13.67991 -13.22426 -13.20724 -12.86945 -12.64092 -12.20477 -12.11481 -11.91436 -11.87021 -11.55525 -11.32078 -11.09312 -11.05042 -10.98952 -10.78356 -10.20154 -9.84532 -9.80476 -9.54833 -9.10539 -9.06932 -8.56849 -8.28025 -6.54183 -6.24953 -3.95903 0.40851 0.50345 2.69354 2.73666 2.94690 3.01890 3.19460 3.22050 3.27390 3.28626 3.50462 3.62686 3.83425 4.00015 4.13834 4.17361 4.35070 4.52514 4.57078 4.65248 4.80121 4.98237 5.07944 5.10663 5.15994 5.20446 5.29268 5.37283 5.45409 5.51709 5.59748 5.60621 5.81968 5.83857 6.00268 6.06074 6.16175 6.42090 6.50955 7.53019 7.56883 7.60258 8.32076 8.45223 9.20620 10.82524 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.003626 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.177983 B = 7720.309821 C = 9337.438076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.146 4.146 11 C 0.556 3.444 12 O -0.510 6.510 13 N -0.625 5.625 14 C 0.075 3.925 15 C 0.062 3.938 16 H 0.145 0.855 17 C -0.133 4.133 18 C 0.118 3.882 19 H 0.136 0.864 20 C 0.013 3.987 21 N -0.460 5.460 22 C 0.381 3.619 23 C -0.263 4.263 24 C 0.370 3.630 25 F -0.099 7.099 26 N -0.567 5.567 27 C 0.364 3.636 28 N -0.553 5.553 29 H 0.268 0.732 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.160 0.840 39 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.902 -20.016 1.787 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.170 5.830 10 C -0.296 4.296 11 C 0.345 3.655 12 O -0.384 6.384 13 N -0.364 5.364 14 C -0.050 4.050 15 C -0.044 4.044 16 H 0.163 0.837 17 C -0.172 4.172 18 C 0.014 3.986 19 H 0.153 0.847 20 C -0.114 4.114 21 N -0.178 5.178 22 C 0.141 3.859 23 C -0.289 4.289 24 C 0.210 3.790 25 F -0.078 7.078 26 N -0.289 5.289 27 C 0.075 3.925 28 N -0.273 5.273 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.178 0.822 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 11.542 -20.154 2.406 23.350 hybrid contribution 2.758 1.630 -0.364 3.224 sum 14.301 -18.525 2.042 23.491 Atomic orbital electron populations 1.70022 1.05936 1.27400 1.46843 1.24980 0.95018 0.98998 0.94457 0.86125 0.79584 0.81883 0.77976 1.19654 1.20504 1.20473 1.22883 0.94868 0.91611 1.59013 0.91015 1.85380 1.04667 0.96268 1.96687 1.23492 1.06548 0.95141 1.04436 1.19978 0.85600 0.85227 0.74673 1.90716 1.14665 1.84945 1.48061 1.49245 1.05591 1.05593 1.75927 1.23112 0.82093 0.97144 1.02629 1.24868 1.01249 0.92069 0.86165 0.83707 1.24098 0.92771 1.01679 0.98627 1.24038 1.00269 0.80264 0.94054 0.84652 1.23887 0.83897 1.03871 0.99778 1.61787 1.12033 1.42404 1.01545 1.19953 0.89103 0.85316 0.91494 1.22005 0.96338 1.06732 1.03856 1.18156 0.79302 0.91131 0.90377 1.91676 1.28048 1.93936 1.94178 1.67918 1.05610 1.25625 1.29770 1.24810 0.87208 0.89791 0.90671 1.68461 1.40406 1.10037 1.08400 0.92187 0.89768 0.89577 0.90019 0.91673 0.88608 0.88216 0.86730 0.88637 0.82221 0.77290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -3.01 5.44 36.01 0.20 -2.81 16 11 C 0.56 10.48 7.91 -10.98 -0.09 10.39 16 12 O -0.51 -11.47 16.21 5.55 0.09 -11.38 16 13 N -0.63 -8.49 2.95 -156.59 -0.46 -8.95 16 14 C 0.08 0.79 5.71 -1.68 -0.01 0.78 16 15 C 0.06 0.44 4.92 -62.31 -0.31 0.14 16 16 H 0.15 0.63 8.14 -51.93 -0.42 0.20 16 17 C -0.13 -0.92 6.83 -22.11 -0.15 -1.07 16 18 C 0.12 1.22 5.24 -62.37 -0.33 0.90 16 19 H 0.14 1.46 8.06 -51.93 -0.42 1.04 16 20 C 0.01 0.13 6.14 -1.71 -0.01 0.12 16 21 N -0.46 -4.04 5.30 -156.51 -0.83 -4.87 16 22 C 0.38 3.86 4.19 -154.76 -0.65 3.21 16 23 C -0.26 -2.35 9.68 -39.04 -0.38 -2.73 16 24 C 0.37 3.96 8.50 -17.05 -0.14 3.81 16 25 F -0.10 -1.04 17.30 2.25 0.04 -1.00 16 26 N -0.57 -6.75 10.45 -14.99 -0.16 -6.91 16 27 C 0.36 4.01 12.28 -92.21 -1.13 2.88 16 28 N -0.55 -6.44 7.77 -13.84 -0.11 -6.55 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.08 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.79 6.09 -51.93 -0.32 0.47 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.11 1.45 5.96 -51.93 -0.31 1.14 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -35.28 345.81 -9.91 -45.19 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.39 Total: -0.75 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.80 Total: 2.67 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.82 Total: -52.60 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.28 -9.91 -45.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102537165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.134 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds