Wall clock time and date at job start Tue Mar 31 2020 20:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48497 * 109.46649 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47023 * 300.00336 * 3 2 1 6 6 H 1.48496 * 109.46808 * 60.00380 * 3 2 1 7 7 C 1.38800 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99616 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00291 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00117 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47309 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99506 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99842 * 180.02562 * 11 10 9 14 14 C 1.47857 * 126.92978 * 0.02562 * 13 11 10 15 15 C 1.56023 * 105.11508 * 181.90421 * 14 13 11 16 16 H 1.08997 * 116.26490 * 158.85434 * 15 14 13 17 17 C 1.57084 * 99.59679 * 32.80451 * 15 14 13 18 18 C 1.49280 * 126.92378 * 179.70892 * 13 11 10 19 19 H 1.09006 * 116.12520 * 16.88941 * 18 13 11 20 20 C 1.56011 * 104.12955 * 246.92439 * 18 13 11 21 21 N 1.47815 * 105.10773 * 288.64533 * 20 18 13 22 22 C 1.38571 * 110.72124 * 122.75556 * 21 20 18 23 23 C 1.39473 * 120.50875 * 176.25088 * 22 21 20 24 24 C 1.38471 * 118.31038 * 180.02562 * 23 22 21 25 25 F 1.35090 * 120.43327 * 180.02562 * 24 23 22 26 26 N 1.32792 * 119.13493 * 0.02562 * 24 23 22 27 27 C 1.31758 * 120.96979 * 0.02562 * 26 24 23 28 28 N 1.31766 * 121.85476 * 359.71121 * 27 26 24 29 29 H 0.96997 * 120.00145 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47238 * 60.00255 * 10 9 7 31 31 H 1.08997 * 109.47423 * 299.99953 * 10 9 7 32 32 H 1.09000 * 110.31483 * 300.80838 * 14 13 11 33 33 H 1.08994 * 110.31304 * 62.99257 * 14 13 11 34 34 H 1.09000 * 112.35862 * 64.34040 * 17 15 14 35 35 H 1.09004 * 112.35724 * 191.66484 * 17 15 14 36 36 H 1.09001 * 110.32249 * 47.69355 * 20 18 13 37 37 H 1.09002 * 110.32327 * 169.80046 * 20 18 13 38 38 H 1.07997 * 120.84697 * 359.97438 * 23 22 21 39 39 H 1.07994 * 119.07570 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0037 14 6 4.3214 -6.2774 -0.0032 15 6 4.7947 -7.7632 -0.0545 16 1 5.8092 -7.9341 -0.4144 17 6 3.6326 -8.3787 -0.9138 18 6 2.4932 -7.7940 0.0015 19 1 1.4690 -8.0410 -0.2781 20 6 2.9856 -8.3000 1.3927 21 7 4.4610 -8.2988 1.3030 22 6 5.0121 -7.5076 2.2982 23 6 6.3958 -7.4236 2.4511 24 6 6.8974 -6.6198 3.4609 25 9 8.2306 -6.5066 3.6470 26 7 6.0507 -5.9616 4.2441 27 6 4.7484 -6.0646 4.0724 28 7 4.2296 -6.8141 3.1209 29 1 -0.4850 0.8400 0.0004 30 1 3.1252 -3.7317 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 4.6764 -5.7368 -0.8806 33 1 4.6785 -5.7977 0.9080 34 1 3.6051 -7.9732 -1.9251 35 1 3.6481 -9.4687 -0.9120 36 1 2.6518 -7.6251 2.1808 37 1 2.6196 -9.3096 1.5795 38 1 7.0593 -7.9721 1.7989 39 1 4.0877 -5.5155 4.7267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102537165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:19 Heat of formation + Delta-G solvation = 13.912899 kcal Electronic energy + Delta-G solvation = -26979.078519 eV Core-core repulsion = 22963.950176 eV Total energy + Delta-G solvation = -4015.128344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.32191 -43.13076 -41.39458 -39.68566 -36.12466 -34.63428 -34.07313 -33.28104 -31.34014 -31.02986 -29.85374 -27.71569 -26.55404 -25.57469 -24.76567 -22.68740 -21.93251 -20.51521 -19.83160 -19.54108 -18.98139 -18.20424 -17.83043 -17.44873 -17.03137 -16.93120 -16.69815 -16.43535 -16.19183 -15.97041 -15.66681 -15.08093 -14.95939 -14.80370 -14.54212 -14.26278 -13.97672 -13.73229 -13.56608 -13.23482 -13.04858 -12.95131 -12.73181 -12.61451 -12.52038 -12.37349 -12.08398 -11.79881 -11.75237 -11.19966 -11.11075 -10.91663 -10.63204 -10.35319 -9.98076 -9.56504 -8.72871 -8.39322 -6.18215 -0.35600 -0.28641 1.16906 1.37904 1.39513 1.49214 1.52665 1.92616 1.99051 2.22266 2.24831 2.48027 2.88333 2.94897 3.08258 3.20919 3.27439 3.40885 3.63135 3.70681 3.82156 3.83075 3.97071 4.06384 4.20792 4.26632 4.36233 4.42274 4.47454 4.58718 4.76752 4.81834 4.89382 4.93375 5.06383 5.21517 5.23336 5.36383 5.66072 5.73018 6.14784 6.27902 6.80571 7.01900 7.03392 8.70225 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.003626 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.177983 B = 7720.309821 C = 9337.438076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.077 0.923 9 S -0.139 6.139 10 C -0.118 4.118 11 C 0.555 3.445 12 O -0.559 6.559 13 N -0.616 5.616 14 C 0.063 3.937 15 C 0.077 3.923 16 H 0.190 0.810 17 C -0.113 4.113 18 C 0.102 3.898 19 H 0.126 0.874 20 C 0.018 3.982 21 N -0.448 5.448 22 C 0.371 3.629 23 C -0.243 4.243 24 C 0.355 3.645 25 F -0.101 7.101 26 N -0.589 5.589 27 C 0.354 3.646 28 N -0.573 5.573 29 H 0.273 0.727 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.195 0.805 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.003 -21.513 0.607 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.696 4.696 8 H 0.095 0.905 9 S 0.088 5.912 10 C -0.269 4.269 11 C 0.343 3.657 12 O -0.438 6.438 13 N -0.351 5.351 14 C -0.061 4.061 15 C -0.027 4.027 16 H 0.207 0.793 17 C -0.151 4.151 18 C -0.001 4.001 19 H 0.144 0.856 20 C -0.110 4.110 21 N -0.166 5.166 22 C 0.131 3.869 23 C -0.268 4.268 24 C 0.196 3.804 25 F -0.080 7.080 26 N -0.312 5.312 27 C 0.066 3.934 28 N -0.294 5.294 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.212 0.788 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 14.704 -21.704 1.224 26.245 hybrid contribution 1.840 1.956 0.030 2.686 sum 16.544 -19.748 1.253 25.793 Atomic orbital electron populations 1.70173 1.07892 1.28675 1.47755 1.26089 0.95956 1.03157 0.93553 0.84931 0.78457 0.76402 0.78324 1.18368 1.19556 1.19750 1.23179 0.95106 0.92109 1.59254 0.90473 1.85506 1.09863 0.98877 1.96973 1.23256 1.03512 0.94934 1.05243 1.19573 0.85451 0.85593 0.75063 1.90690 1.16638 1.85551 1.50880 1.49138 1.06784 1.05963 1.73254 1.23441 0.79796 1.00305 1.02553 1.25221 1.03444 0.88835 0.85217 0.79282 1.24100 0.89885 1.03194 0.97939 1.24364 1.01564 0.78106 0.96029 0.85586 1.23771 0.84808 1.04152 0.98278 1.61927 1.10963 1.41732 1.01988 1.20209 0.89650 0.85363 0.91629 1.22209 0.96046 1.05479 1.03095 1.18370 0.79204 0.91787 0.91026 1.91673 1.28013 1.94019 1.94262 1.67881 1.06076 1.26514 1.30740 1.25037 0.87236 0.90110 0.91039 1.68490 1.41285 1.10661 1.08978 0.91834 0.89346 0.88056 0.88617 0.93156 0.87799 0.85274 0.89765 0.86615 0.78808 0.76269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 2 C 0.02 1.01 5.49 84.86 0.47 1.48 16 3 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.87 9.50 67.95 0.65 -31.23 16 8 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 9 S -0.14 -7.88 20.57 -56.49 -1.16 -9.04 16 10 C -0.12 -4.97 5.44 71.24 0.39 -4.58 16 11 C 0.55 21.33 7.91 87.66 0.69 22.03 16 12 O -0.56 -26.32 16.21 -3.04 -0.05 -26.37 16 13 N -0.62 -16.12 2.95 -767.73 -2.26 -18.39 16 14 C 0.06 1.16 5.71 87.17 0.50 1.66 16 15 C 0.08 0.75 4.92 46.85 0.23 0.98 16 16 H 0.19 0.32 8.14 -2.39 -0.02 0.30 16 17 C -0.11 -1.06 6.83 33.59 0.23 -0.83 16 18 C 0.10 1.95 5.24 47.05 0.25 2.19 16 19 H 0.13 2.66 8.06 -2.38 -0.02 2.64 16 20 C 0.02 0.32 6.14 87.17 0.54 0.85 16 21 N -0.45 -6.34 5.30 -649.08 -3.44 -9.78 16 22 C 0.37 6.68 4.19 133.10 0.56 7.24 16 23 C -0.24 -3.61 9.68 22.62 0.22 -3.39 16 24 C 0.36 7.07 8.50 84.60 0.72 7.78 16 25 F -0.10 -1.96 17.30 44.97 0.78 -1.18 16 26 N -0.59 -13.87 10.45 -201.32 -2.10 -15.97 16 27 C 0.35 7.89 12.28 180.90 2.22 10.11 16 28 N -0.57 -13.13 7.77 -197.69 -1.54 -14.67 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.09 3.60 8.14 -2.40 -0.02 3.58 16 31 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.13 6.09 -2.39 -0.01 1.11 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.08 2.12 5.96 -2.39 -0.01 2.10 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.22 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -81.30 345.81 1.28 -80.01 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.10 Total: 10.73 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 7.65 Total: 14.29 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -9.06 Total: -114.46 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -81.30 1.28 -80.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102537165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.928 kcal (2) G-P(sol) polarization free energy of solvation -81.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds