Wall clock time and date at job start Tue Mar 31 2020 20:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00213 * 2 1 4 4 H 1.48497 * 109.46917 * 270.00435 * 3 2 1 5 5 H 1.48496 * 109.47181 * 30.00525 * 3 2 1 6 6 H 1.48499 * 109.46833 * 150.00164 * 3 2 1 7 7 C 1.38797 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00044 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46944 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00448 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00011 * 179.97438 * 11 10 9 14 14 C 1.47864 * 126.92568 * 359.97438 * 13 11 10 15 15 C 1.56018 * 105.11595 * 181.93627 * 14 13 11 16 16 H 1.09002 * 116.91086 * 159.22254 * 15 14 13 17 17 C 1.57087 * 99.59686 * 32.80585 * 15 14 13 18 18 C 1.49281 * 126.92749 * 180.02562 * 13 11 10 19 19 H 1.08992 * 116.75415 * 16.46255 * 18 13 11 20 20 C 1.56012 * 104.12735 * 246.88741 * 18 13 11 21 21 N 1.48286 * 105.07065 * 288.79770 * 20 18 13 22 22 C 1.39122 * 111.00094 * 122.54214 * 21 20 18 23 23 N 1.32568 * 120.10545 * 348.04657 * 22 21 20 24 24 C 1.32315 * 119.93950 * 179.97438 * 23 22 21 25 25 C 1.38062 * 120.16735 * 359.97438 * 24 23 22 26 26 N 1.32353 * 120.22154 * 0.27833 * 25 24 23 27 27 C 1.32072 * 120.04990 * 359.44716 * 26 25 24 28 28 F 1.35104 * 120.08286 * 180.26998 * 27 26 25 29 29 H 0.97003 * 119.99473 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47281 * 59.99762 * 10 9 7 31 31 H 1.09002 * 109.47264 * 299.99599 * 10 9 7 32 32 H 1.09001 * 110.31406 * 63.02374 * 14 13 11 33 33 H 1.09004 * 110.31420 * 300.84490 * 14 13 11 34 34 H 1.09007 * 112.35834 * 191.75085 * 17 15 14 35 35 H 1.09000 * 112.43729 * 64.35518 * 17 15 14 36 36 H 1.08995 * 110.32331 * 169.90049 * 20 18 13 37 37 H 1.08998 * 110.40622 * 47.73813 * 20 18 13 38 38 H 1.08003 * 119.91501 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.88985 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4480 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9871 -5.3027 0.0001 12 8 0.7908 -5.5023 0.0010 13 7 2.8438 -6.3432 -0.0003 14 6 4.3210 -6.2776 -0.0019 15 6 4.7942 -7.7634 -0.0526 16 1 5.8089 -7.9463 -0.4063 17 6 3.6309 -8.3796 -0.9098 18 6 2.4927 -7.7941 -0.0003 19 1 1.4700 -8.0514 -0.2758 20 6 2.9808 -8.3041 1.3909 21 7 4.4612 -8.2988 1.3058 22 6 5.0153 -7.5044 2.3045 23 7 4.2428 -6.6947 3.0153 24 6 4.7731 -5.9410 3.9646 25 6 6.1293 -5.9957 4.2175 26 7 6.9073 -6.7979 3.5084 27 6 6.3863 -7.5581 2.5624 28 9 7.1791 -8.3813 1.8419 29 1 -0.4849 0.8401 0.0004 30 1 3.1244 -3.7314 0.8894 31 1 3.1243 -3.7315 -0.8906 32 1 4.6795 -5.7972 0.9085 33 1 4.6749 -5.7376 -0.8802 34 1 3.6455 -9.4696 -0.9059 35 1 3.6011 -7.9760 -1.9219 36 1 2.6158 -9.3148 1.5731 37 1 2.6448 -7.6327 2.1811 38 1 4.1435 -5.2812 4.5432 39 1 6.5574 -5.3788 4.9937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102537199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:08 Heat of formation + Delta-G solvation = 40.317517 kcal Electronic energy + Delta-G solvation = -27243.816145 eV Core-core repulsion = 23229.832792 eV Total energy + Delta-G solvation = -4013.983353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.33546 -42.21376 -40.59606 -38.27773 -35.27062 -33.85898 -32.46778 -31.94925 -30.22225 -29.69309 -28.48798 -25.93949 -25.52747 -24.49279 -24.13112 -21.65745 -21.13930 -19.22401 -18.65761 -18.41546 -18.03203 -17.52714 -16.91637 -16.69996 -16.06499 -15.49326 -15.12940 -14.84317 -14.70061 -14.51724 -14.30892 -13.99411 -13.84751 -13.54944 -13.23035 -13.11813 -12.82142 -12.63317 -12.30381 -12.16851 -11.98503 -11.89151 -11.72505 -11.54254 -11.29427 -11.09686 -11.05958 -10.79780 -10.21489 -9.85629 -9.64201 -9.46632 -9.10320 -8.79374 -8.47511 -8.28178 -6.54370 -6.25377 -3.96311 0.21440 0.56634 2.70780 2.73424 2.96819 3.03096 3.19144 3.21098 3.26605 3.27374 3.51576 3.65903 3.80711 3.97325 4.14325 4.17306 4.31901 4.58315 4.59409 4.73279 4.84129 5.02754 5.09642 5.09899 5.17769 5.23160 5.36410 5.44025 5.51137 5.53893 5.58032 5.66396 5.82891 5.87495 5.97986 6.07105 6.19645 6.46690 6.71009 7.20425 7.55217 7.58415 8.31205 8.48452 9.19885 10.82034 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.003519 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.202369 B = 7954.326036 C = 9166.013321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.057 6.057 10 C -0.145 4.145 11 C 0.556 3.444 12 O -0.512 6.512 13 N -0.622 5.622 14 C 0.077 3.923 15 C 0.057 3.943 16 H 0.143 0.857 17 C -0.132 4.132 18 C 0.118 3.882 19 H 0.135 0.865 20 C 0.016 3.984 21 N -0.457 5.457 22 C 0.245 3.755 23 N -0.440 5.440 24 C 0.069 3.931 25 C 0.062 3.938 26 N -0.454 5.454 27 C 0.260 3.740 28 F -0.096 7.096 29 H 0.269 0.731 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.182 0.818 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.283 -17.833 4.291 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.089 0.911 9 S 0.170 5.830 10 C -0.295 4.295 11 C 0.345 3.655 12 O -0.386 6.386 13 N -0.360 5.360 14 C -0.048 4.048 15 C -0.049 4.049 16 H 0.161 0.839 17 C -0.170 4.170 18 C 0.014 3.986 19 H 0.153 0.847 20 C -0.111 4.111 21 N -0.177 5.177 22 C 0.009 3.991 23 N -0.158 5.158 24 C -0.092 4.092 25 C -0.097 4.097 26 N -0.174 5.174 27 C 0.099 3.901 28 F -0.075 7.075 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.199 0.801 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.475 -18.484 4.315 22.180 hybrid contribution 2.084 1.958 -0.005 2.860 sum 13.559 -16.526 4.310 21.807 Atomic orbital electron populations 1.70017 1.05942 1.27488 1.46757 1.24979 0.95015 0.98979 0.94478 0.86179 0.79404 0.81586 0.78405 1.20227 1.20674 1.19730 1.22843 0.94826 0.91644 1.59105 0.91078 1.85387 1.04728 0.96223 1.96691 1.23485 1.06478 0.95165 1.04417 1.19959 0.85586 0.85222 0.74695 1.90711 1.14686 1.84965 1.48222 1.49194 1.05581 1.05505 1.75749 1.23064 0.82021 0.97258 1.02459 1.24904 1.01216 0.92040 0.86740 0.83901 1.24010 0.92713 1.01682 0.98592 1.23915 1.00202 0.80319 0.94143 0.84725 1.23906 0.84190 1.03398 0.99652 1.62439 1.11846 1.42369 1.01047 1.20674 0.89660 0.92213 0.96548 1.68588 1.37830 1.03213 1.06157 1.23831 0.94776 0.96398 0.94156 1.23532 0.91273 0.96305 0.98551 1.67772 1.40081 1.05007 1.04492 1.18571 0.85842 0.92812 0.92840 1.91651 1.73849 1.67904 1.74073 0.92141 0.89769 0.89611 0.91693 0.90207 0.88201 0.88722 0.88695 0.87504 0.80054 0.80050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 10 C -0.14 -3.01 5.44 36.01 0.20 -2.81 16 11 C 0.56 10.68 7.91 -10.98 -0.09 10.59 16 12 O -0.51 -11.68 16.22 5.56 0.09 -11.59 16 13 N -0.62 -8.85 2.95 -156.83 -0.46 -9.32 16 14 C 0.08 0.89 5.66 -1.68 -0.01 0.88 16 15 C 0.06 0.51 4.95 -62.28 -0.31 0.20 16 16 H 0.14 1.02 8.14 -51.93 -0.42 0.59 16 17 C -0.13 -1.06 6.80 -22.34 -0.15 -1.21 16 18 C 0.12 1.32 5.22 -62.60 -0.33 1.00 16 19 H 0.14 1.53 8.08 -51.93 -0.42 1.11 16 20 C 0.02 0.17 6.16 -1.45 -0.01 0.16 16 21 N -0.46 -4.72 5.14 -156.00 -0.80 -5.52 16 22 C 0.25 2.78 4.32 -154.58 -0.67 2.11 16 23 N -0.44 -5.17 7.39 -12.17 -0.09 -5.26 16 24 C 0.07 0.63 11.21 -17.41 -0.20 0.44 16 25 C 0.06 0.52 11.21 -17.39 -0.19 0.33 16 26 N -0.45 -5.00 10.50 -13.24 -0.14 -5.14 16 27 C 0.26 2.96 8.30 -16.93 -0.14 2.82 16 28 F -0.10 -1.07 16.94 2.25 0.04 -1.03 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.08 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 32 H 0.06 0.84 5.78 -51.93 -0.30 0.54 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.11 1.41 6.05 -51.93 -0.31 1.10 16 38 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -35.50 345.11 -8.74 -44.25 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.38 Total: -0.43 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.70 Total: 1.61 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.76 Total: -50.46 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.50 -8.74 -44.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102537199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.566 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds