Wall clock time and date at job start Tue Mar 31 2020 20:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00213 * 2 1 4 4 H 1.48497 * 109.46917 * 270.00435 * 3 2 1 5 5 H 1.48496 * 109.47181 * 30.00525 * 3 2 1 6 6 H 1.48499 * 109.46833 * 150.00164 * 3 2 1 7 7 C 1.38797 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00044 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46944 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00448 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00011 * 179.97438 * 11 10 9 14 14 C 1.47864 * 126.92568 * 359.97438 * 13 11 10 15 15 C 1.56018 * 105.11595 * 181.93627 * 14 13 11 16 16 H 1.09002 * 116.91086 * 159.22254 * 15 14 13 17 17 C 1.57087 * 99.59686 * 32.80585 * 15 14 13 18 18 C 1.49281 * 126.92749 * 180.02562 * 13 11 10 19 19 H 1.08992 * 116.75415 * 16.46255 * 18 13 11 20 20 C 1.56012 * 104.12735 * 246.88741 * 18 13 11 21 21 N 1.48286 * 105.07065 * 288.79770 * 20 18 13 22 22 C 1.39122 * 111.00094 * 122.54214 * 21 20 18 23 23 N 1.32568 * 120.10545 * 348.04657 * 22 21 20 24 24 C 1.32315 * 119.93950 * 179.97438 * 23 22 21 25 25 C 1.38062 * 120.16735 * 359.97438 * 24 23 22 26 26 N 1.32353 * 120.22154 * 0.27833 * 25 24 23 27 27 C 1.32072 * 120.04990 * 359.44716 * 26 25 24 28 28 F 1.35104 * 120.08286 * 180.26998 * 27 26 25 29 29 H 0.97003 * 119.99473 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47281 * 59.99762 * 10 9 7 31 31 H 1.09002 * 109.47264 * 299.99599 * 10 9 7 32 32 H 1.09001 * 110.31406 * 63.02374 * 14 13 11 33 33 H 1.09004 * 110.31420 * 300.84490 * 14 13 11 34 34 H 1.09007 * 112.35834 * 191.75085 * 17 15 14 35 35 H 1.09000 * 112.43729 * 64.35518 * 17 15 14 36 36 H 1.08995 * 110.32331 * 169.90049 * 20 18 13 37 37 H 1.08998 * 110.40622 * 47.73813 * 20 18 13 38 38 H 1.08003 * 119.91501 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.88985 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4480 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9871 -5.3027 0.0001 12 8 0.7908 -5.5023 0.0010 13 7 2.8438 -6.3432 -0.0003 14 6 4.3210 -6.2776 -0.0019 15 6 4.7942 -7.7634 -0.0526 16 1 5.8089 -7.9463 -0.4063 17 6 3.6309 -8.3796 -0.9098 18 6 2.4927 -7.7941 -0.0003 19 1 1.4700 -8.0514 -0.2758 20 6 2.9808 -8.3041 1.3909 21 7 4.4612 -8.2988 1.3058 22 6 5.0153 -7.5044 2.3045 23 7 4.2428 -6.6947 3.0153 24 6 4.7731 -5.9410 3.9646 25 6 6.1293 -5.9957 4.2175 26 7 6.9073 -6.7979 3.5084 27 6 6.3863 -7.5581 2.5624 28 9 7.1791 -8.3813 1.8419 29 1 -0.4849 0.8401 0.0004 30 1 3.1244 -3.7314 0.8894 31 1 3.1243 -3.7315 -0.8906 32 1 4.6795 -5.7972 0.9085 33 1 4.6749 -5.7376 -0.8802 34 1 3.6455 -9.4696 -0.9059 35 1 3.6011 -7.9760 -1.9219 36 1 2.6158 -9.3148 1.5731 37 1 2.6448 -7.6327 2.1811 38 1 4.1435 -5.2812 4.5432 39 1 6.5574 -5.3788 4.9937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102537199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:08 Heat of formation + Delta-G solvation = 14.877372 kcal Electronic energy + Delta-G solvation = -27244.919313 eV Core-core repulsion = 23229.832792 eV Total energy + Delta-G solvation = -4015.086521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.15172 -43.06034 -41.48178 -39.68477 -36.18242 -34.80216 -34.61878 -32.97686 -31.10326 -30.83784 -29.65392 -27.70099 -26.81154 -25.35275 -24.96781 -22.68143 -21.98112 -20.41895 -19.71799 -19.47866 -19.19112 -18.57700 -18.23200 -17.63935 -17.05816 -16.91605 -16.67039 -16.14257 -16.04789 -15.73057 -15.31005 -15.01173 -14.85617 -14.60296 -14.54805 -14.23480 -13.95164 -13.78157 -13.53511 -13.28436 -13.17435 -12.92793 -12.89812 -12.74209 -12.57662 -12.56114 -12.32656 -12.17310 -11.76235 -11.20099 -11.17464 -10.85491 -10.40775 -10.34242 -9.82906 -9.40761 -8.71886 -8.37823 -6.16985 -0.53661 -0.21150 1.17226 1.40055 1.40719 1.49336 1.52890 1.91815 1.94009 2.23688 2.26406 2.50478 2.88727 2.96385 3.07441 3.15079 3.22167 3.35973 3.49823 3.69905 3.82484 3.85383 4.02951 4.10639 4.20023 4.25218 4.36250 4.38342 4.41373 4.58406 4.72852 4.77760 4.86721 4.92262 5.03988 5.16651 5.21089 5.37407 5.65413 5.96401 6.15927 6.27999 6.45170 7.02835 7.03392 8.71463 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.003519 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.202369 B = 7954.326036 C = 9166.013321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 0.998 3.002 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.078 0.922 9 S -0.139 6.139 10 C -0.118 4.118 11 C 0.556 3.444 12 O -0.560 6.560 13 N -0.612 5.612 14 C 0.069 3.931 15 C 0.066 3.934 16 H 0.170 0.830 17 C -0.112 4.112 18 C 0.105 3.895 19 H 0.130 0.870 20 C 0.023 3.977 21 N -0.454 5.454 22 C 0.236 3.764 23 N -0.467 5.467 24 C 0.064 3.936 25 C 0.075 3.925 26 N -0.472 5.472 27 C 0.249 3.751 28 F -0.098 7.098 29 H 0.272 0.728 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.202 0.798 39 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.963 -18.245 4.302 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.696 4.696 8 H 0.096 0.904 9 S 0.088 5.912 10 C -0.269 4.269 11 C 0.344 3.656 12 O -0.438 6.438 13 N -0.347 5.347 14 C -0.055 4.055 15 C -0.039 4.039 16 H 0.187 0.813 17 C -0.150 4.150 18 C 0.002 3.998 19 H 0.148 0.852 20 C -0.105 4.105 21 N -0.174 5.174 22 C 0.000 4.000 23 N -0.185 5.185 24 C -0.096 4.096 25 C -0.084 4.084 26 N -0.192 5.192 27 C 0.090 3.910 28 F -0.077 7.077 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.219 0.781 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 14.211 -18.958 4.314 24.083 hybrid contribution 1.307 2.001 0.080 2.391 sum 15.518 -16.958 4.395 23.403 Atomic orbital electron populations 1.70174 1.07939 1.28723 1.47725 1.26096 0.95942 1.03177 0.93547 0.84973 0.78208 0.76049 0.78877 1.19263 1.20028 1.18288 1.23150 0.95143 0.92035 1.59317 0.90357 1.85530 1.09823 0.98871 1.96981 1.23250 1.03537 0.94751 1.05332 1.19593 0.85391 0.85581 0.75001 1.90687 1.16577 1.85547 1.50959 1.49080 1.06545 1.05901 1.73222 1.23302 0.80004 0.99736 1.02436 1.25100 1.02708 0.89702 0.86373 0.81325 1.24004 0.89948 1.03065 0.97975 1.24221 1.01395 0.78262 0.95891 0.85242 1.23803 0.84711 1.03750 0.98261 1.62532 1.11147 1.42296 1.01440 1.20687 0.89672 0.92673 0.96959 1.68597 1.38724 1.04058 1.07133 1.24281 0.95651 0.96051 0.93666 1.24122 0.90803 0.95294 0.98190 1.67837 1.40807 1.05653 1.04928 1.18609 0.85874 0.93243 0.93297 1.91635 1.73858 1.68028 1.74181 0.91858 0.88978 0.88249 0.92822 0.89019 0.85517 0.87877 0.86734 0.90124 0.78116 0.76396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.55 13.22 21.65 0.29 -55.26 16 2 C 0.02 0.99 5.49 84.86 0.47 1.46 16 3 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.55 -31.47 9.50 67.95 0.65 -30.82 16 8 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 9 S -0.14 -7.81 20.57 -56.49 -1.16 -8.98 16 10 C -0.12 -4.93 5.44 71.24 0.39 -4.54 16 11 C 0.56 21.69 7.91 87.66 0.69 22.38 16 12 O -0.56 -26.53 16.22 -3.03 -0.05 -26.58 16 13 N -0.61 -17.04 2.95 -768.49 -2.27 -19.30 16 14 C 0.07 1.49 5.66 87.16 0.49 1.98 16 15 C 0.07 1.00 4.95 46.84 0.23 1.24 16 16 H 0.17 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.11 -1.46 6.80 33.44 0.23 -1.24 16 18 C 0.11 2.23 5.22 46.91 0.24 2.48 16 19 H 0.13 2.90 8.08 -2.39 -0.02 2.88 16 20 C 0.02 0.46 6.16 87.08 0.54 0.99 16 21 N -0.45 -8.52 5.14 -647.48 -3.33 -11.85 16 22 C 0.24 5.04 4.32 133.09 0.57 5.61 16 23 N -0.47 -10.64 7.39 -192.41 -1.42 -12.07 16 24 C 0.06 1.10 11.21 84.58 0.95 2.04 16 25 C 0.08 1.10 11.21 84.57 0.95 2.05 16 26 N -0.47 -9.62 10.50 -195.79 -2.06 -11.68 16 27 C 0.25 5.32 8.30 84.99 0.71 6.02 16 28 F -0.10 -2.03 16.94 44.97 0.76 -1.27 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 31 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 32 H 0.05 1.32 5.78 -2.39 -0.01 1.31 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.13 6.05 -2.39 -0.01 2.12 16 38 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -80.12 345.11 0.99 -79.13 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.10 Total: 12.92 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 7.10 Total: 9.66 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -8.79 Total: -110.15 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.76 Total: -1.27 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.16 Total: -8.98 kcal Total: -80.12 0.99 -79.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102537199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.008 kcal (2) G-P(sol) polarization free energy of solvation -80.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds