Wall clock time and date at job start Tue Mar 31 2020 20:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86806 * 119.99639 * 2 1 4 4 H 1.48492 * 109.47169 * 269.99514 * 3 2 1 5 5 H 1.48498 * 109.47146 * 30.00241 * 3 2 1 6 6 H 1.48502 * 109.46653 * 149.99740 * 3 2 1 7 7 C 1.38799 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99740 * 359.97438 * 7 2 1 9 9 S 1.76190 * 120.00194 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00269 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47541 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99805 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.47864 * 126.92957 * 0.02562 * 13 11 10 15 15 C 1.56013 * 105.11434 * 181.91483 * 14 13 11 16 16 H 1.08999 * 116.26116 * 158.85312 * 15 14 13 17 17 C 1.57090 * 99.59809 * 32.80656 * 15 14 13 18 18 C 1.49288 * 126.92494 * 179.97438 * 13 11 10 19 19 H 1.08994 * 116.75982 * 16.48452 * 18 13 11 20 20 C 1.56015 * 104.12685 * 246.91036 * 18 13 11 21 21 N 1.48294 * 105.06624 * 288.79821 * 20 18 13 22 22 C 1.38535 * 110.99539 * 122.54377 * 21 20 18 23 23 N 1.32462 * 119.18494 * 176.52166 * 22 21 20 24 24 C 1.32296 * 120.76398 * 179.76304 * 23 22 21 25 25 C 1.38785 * 119.16714 * 0.50514 * 24 23 22 26 26 F 1.35100 * 120.74521 * 179.77130 * 25 24 23 27 27 C 1.38780 * 118.51191 * 359.75312 * 25 24 23 28 28 N 1.32295 * 119.16601 * 359.97438 * 27 25 24 29 29 H 0.97001 * 119.99668 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47341 * 59.99340 * 10 9 7 31 31 H 1.09004 * 109.47191 * 300.00193 * 10 9 7 32 32 H 1.08997 * 110.30795 * 63.00834 * 14 13 11 33 33 H 1.08990 * 110.31275 * 300.82765 * 14 13 11 34 34 H 1.08998 * 112.35647 * 64.33822 * 17 15 14 35 35 H 1.09001 * 112.35590 * 191.74608 * 17 15 14 36 36 H 1.08997 * 110.32494 * 47.69343 * 20 18 13 37 37 H 1.08999 * 110.32085 * 169.80186 * 20 18 13 38 38 H 1.07998 * 120.41333 * 180.23509 * 24 23 22 39 39 H 1.08000 * 120.41465 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0868 -2.9844 -0.0001 11 6 5.5731 -3.2324 0.0010 12 8 6.3441 -2.2961 0.0015 13 7 6.0458 -4.4946 0.0016 14 6 5.2504 -5.7411 0.0006 15 6 6.3005 -6.8937 0.0521 16 1 5.9411 -7.8579 0.4118 17 6 7.4143 -6.1951 0.9120 18 6 7.4780 -4.9159 0.0022 19 1 8.2121 -4.1591 0.2783 20 6 7.6762 -5.5931 -1.3893 21 7 6.9314 -6.8726 -1.3051 22 6 5.9709 -6.9543 -2.3001 23 7 5.2560 -8.0631 -2.4183 24 6 4.3276 -8.1731 -3.3543 25 6 4.1151 -7.1128 -4.2241 26 9 3.1785 -7.1925 -5.1945 27 6 4.8859 -5.9685 -4.0745 28 7 5.7936 -5.9237 -3.1131 29 1 -0.4850 0.8401 -0.0004 30 1 3.6441 -3.4313 -0.8903 31 1 3.6435 -3.4317 0.8896 32 1 4.6569 -5.8104 -0.9110 33 1 4.6043 -5.7783 0.8776 34 1 7.0763 -5.9688 1.9232 35 1 8.3509 -6.7527 0.9093 36 1 7.2622 -4.9653 -2.1783 37 1 8.7344 -5.7806 -1.5717 38 1 3.7454 -9.0784 -3.4432 39 1 4.7466 -5.1252 -4.7346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102537837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:01 Heat of formation + Delta-G solvation = 41.024673 kcal Electronic energy + Delta-G solvation = -27039.079096 eV Core-core repulsion = 23025.126408 eV Total energy + Delta-G solvation = -4013.952689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.30329 -42.32040 -40.49657 -38.34290 -34.64628 -34.30412 -32.47370 -32.08587 -30.27472 -29.80009 -28.60179 -25.88786 -25.64776 -24.93689 -23.86272 -21.75405 -21.13997 -19.39611 -18.62646 -18.28360 -17.86927 -17.52970 -16.92496 -16.69521 -16.12192 -15.58941 -15.20330 -15.01911 -14.86592 -14.70310 -14.33722 -13.92893 -13.60029 -13.54562 -13.32085 -13.14674 -12.83477 -12.78071 -12.36357 -12.25878 -12.09577 -11.92845 -11.69858 -11.37722 -11.35481 -11.29157 -11.03706 -10.64615 -10.43069 -9.88963 -9.60581 -9.53360 -9.03652 -8.85394 -8.55380 -8.53873 -6.96275 -6.32175 -4.04495 0.31125 0.52794 2.54025 2.65255 2.85096 3.07017 3.17454 3.30543 3.47613 3.48322 3.53115 3.56216 3.86264 4.02306 4.14963 4.29932 4.30494 4.32783 4.48395 4.55361 4.62184 4.89862 5.06430 5.07960 5.14217 5.18586 5.24805 5.35758 5.40898 5.49153 5.56457 5.63274 5.72182 5.84988 5.93607 5.97637 6.09636 6.21072 6.68280 7.46264 7.59216 7.90719 8.34249 8.37737 9.13806 10.77061 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.003779 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.319683 B = 7408.462072 C = 9021.644393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.087 0.913 9 S -0.138 6.138 10 C -0.117 4.117 11 C 0.555 3.445 12 O -0.513 6.513 13 N -0.623 5.623 14 C 0.075 3.925 15 C 0.074 3.926 16 H 0.148 0.852 17 C -0.135 4.135 18 C 0.117 3.883 19 H 0.137 0.863 20 C 0.016 3.984 21 N -0.446 5.446 22 C 0.482 3.518 23 N -0.499 5.499 24 C 0.151 3.849 25 C -0.034 4.034 26 F -0.120 7.120 27 C 0.155 3.845 28 N -0.519 5.519 29 H 0.271 0.729 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.183 0.817 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.299 -19.568 -3.894 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.105 0.895 9 S 0.089 5.911 10 C -0.267 4.267 11 C 0.343 3.657 12 O -0.387 6.387 13 N -0.362 5.362 14 C -0.050 4.050 15 C -0.032 4.032 16 H 0.165 0.835 17 C -0.173 4.173 18 C 0.014 3.986 19 H 0.154 0.846 20 C -0.112 4.112 21 N -0.166 5.166 22 C 0.127 3.873 23 N -0.215 5.215 24 C -0.019 4.019 25 C -0.059 4.059 26 F -0.099 7.099 27 C -0.014 4.014 28 N -0.237 5.237 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.200 0.800 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 15.276 -18.340 -3.241 24.088 hybrid contribution -2.319 0.050 -1.043 2.543 sum 12.957 -18.290 -4.285 22.820 Atomic orbital electron populations 1.69942 1.05919 1.27805 1.47961 1.24704 0.94440 0.98940 0.93100 0.86739 0.81902 0.83264 0.79984 1.19160 1.19861 1.15910 1.22295 0.88220 0.97513 1.58964 0.89522 1.84765 1.09332 0.99650 1.97397 1.23235 0.93770 1.04438 1.05290 1.19926 0.90445 0.80459 0.74844 1.90710 1.58808 1.40843 1.48361 1.49204 1.06693 1.04697 1.75557 1.23145 0.94760 0.84628 1.02501 1.24784 0.93923 0.98618 0.85914 0.83481 1.24067 0.99206 0.95418 0.98640 1.23972 0.84730 0.95657 0.94275 0.84577 1.24004 0.99302 0.88160 0.99731 1.61486 1.18752 1.35213 1.01193 1.21169 0.88822 0.84741 0.92612 1.68092 1.07050 1.24248 1.22107 1.23336 0.92787 0.97901 0.87850 1.19383 0.94347 0.99195 0.93008 1.91562 1.62110 1.96530 1.59679 1.23392 0.88217 0.96351 0.93426 1.68401 1.20257 1.28179 1.06814 0.91899 0.89150 0.88767 0.91954 0.89883 0.88604 0.88096 0.86873 0.88452 0.79978 0.80071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.76 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 21.76 27.74 -169.99 -4.72 17.04 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.35 5.44 36.00 0.20 -2.16 16 11 C 0.55 10.18 7.91 -10.99 -0.09 10.10 16 12 O -0.51 -11.11 16.23 5.55 0.09 -11.02 16 13 N -0.62 -8.51 2.95 -156.79 -0.46 -8.97 16 14 C 0.07 0.84 5.71 -1.68 -0.01 0.83 16 15 C 0.07 0.64 5.11 -62.33 -0.32 0.32 16 16 H 0.15 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.13 -1.01 6.81 -22.29 -0.15 -1.17 16 18 C 0.12 1.24 5.22 -62.54 -0.33 0.91 16 19 H 0.14 1.44 8.08 -51.93 -0.42 1.02 16 20 C 0.02 0.16 6.15 -1.44 -0.01 0.15 16 21 N -0.45 -4.59 5.37 -158.43 -0.85 -5.44 16 22 C 0.48 5.51 4.97 -322.71 -1.60 3.91 16 23 N -0.50 -5.28 10.30 -13.86 -0.14 -5.43 16 24 C 0.15 1.32 11.29 -17.15 -0.19 1.12 16 25 C -0.03 -0.33 7.38 -39.18 -0.29 -0.61 16 26 F -0.12 -1.18 17.30 2.25 0.04 -1.14 16 27 C 0.16 1.62 11.29 -17.15 -0.19 1.42 16 28 N -0.52 -6.26 7.66 -13.87 -0.11 -6.36 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 31 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 32 H 0.06 0.80 6.10 -51.93 -0.32 0.49 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 1.46 5.92 -51.93 -0.31 1.15 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -35.01 343.38 -9.39 -44.40 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.43 Total: 0.24 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -2.77 Total: 2.78 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.79 Total: -51.96 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.01 -9.39 -44.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102537837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.420 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds