Wall clock time and date at job start Tue Mar 31 2020 20:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86806 * 119.99639 * 2 1 4 4 H 1.48492 * 109.47169 * 269.99514 * 3 2 1 5 5 H 1.48498 * 109.47146 * 30.00241 * 3 2 1 6 6 H 1.48502 * 109.46653 * 149.99740 * 3 2 1 7 7 C 1.38799 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99740 * 359.97438 * 7 2 1 9 9 S 1.76190 * 120.00194 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00269 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47541 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99805 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.47864 * 126.92957 * 0.02562 * 13 11 10 15 15 C 1.56013 * 105.11434 * 181.91483 * 14 13 11 16 16 H 1.08999 * 116.26116 * 158.85312 * 15 14 13 17 17 C 1.57090 * 99.59809 * 32.80656 * 15 14 13 18 18 C 1.49288 * 126.92494 * 179.97438 * 13 11 10 19 19 H 1.08994 * 116.75982 * 16.48452 * 18 13 11 20 20 C 1.56015 * 104.12685 * 246.91036 * 18 13 11 21 21 N 1.48294 * 105.06624 * 288.79821 * 20 18 13 22 22 C 1.38535 * 110.99539 * 122.54377 * 21 20 18 23 23 N 1.32462 * 119.18494 * 176.52166 * 22 21 20 24 24 C 1.32296 * 120.76398 * 179.76304 * 23 22 21 25 25 C 1.38785 * 119.16714 * 0.50514 * 24 23 22 26 26 F 1.35100 * 120.74521 * 179.77130 * 25 24 23 27 27 C 1.38780 * 118.51191 * 359.75312 * 25 24 23 28 28 N 1.32295 * 119.16601 * 359.97438 * 27 25 24 29 29 H 0.97001 * 119.99668 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47341 * 59.99340 * 10 9 7 31 31 H 1.09004 * 109.47191 * 300.00193 * 10 9 7 32 32 H 1.08997 * 110.30795 * 63.00834 * 14 13 11 33 33 H 1.08990 * 110.31275 * 300.82765 * 14 13 11 34 34 H 1.08998 * 112.35647 * 64.33822 * 17 15 14 35 35 H 1.09001 * 112.35590 * 191.74608 * 17 15 14 36 36 H 1.08997 * 110.32494 * 47.69343 * 20 18 13 37 37 H 1.08999 * 110.32085 * 169.80186 * 20 18 13 38 38 H 1.07998 * 120.41333 * 180.23509 * 24 23 22 39 39 H 1.08000 * 120.41465 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0868 -2.9844 -0.0001 11 6 5.5731 -3.2324 0.0010 12 8 6.3441 -2.2961 0.0015 13 7 6.0458 -4.4946 0.0016 14 6 5.2504 -5.7411 0.0006 15 6 6.3005 -6.8937 0.0521 16 1 5.9411 -7.8579 0.4118 17 6 7.4143 -6.1951 0.9120 18 6 7.4780 -4.9159 0.0022 19 1 8.2121 -4.1591 0.2783 20 6 7.6762 -5.5931 -1.3893 21 7 6.9314 -6.8726 -1.3051 22 6 5.9709 -6.9543 -2.3001 23 7 5.2560 -8.0631 -2.4183 24 6 4.3276 -8.1731 -3.3543 25 6 4.1151 -7.1128 -4.2241 26 9 3.1785 -7.1925 -5.1945 27 6 4.8859 -5.9685 -4.0745 28 7 5.7936 -5.9237 -3.1131 29 1 -0.4850 0.8401 -0.0004 30 1 3.6441 -3.4313 -0.8903 31 1 3.6435 -3.4317 0.8896 32 1 4.6569 -5.8104 -0.9110 33 1 4.6043 -5.7783 0.8776 34 1 7.0763 -5.9688 1.9232 35 1 8.3509 -6.7527 0.9093 36 1 7.2622 -4.9653 -2.1783 37 1 8.7344 -5.7806 -1.5717 38 1 3.7454 -9.0784 -3.4432 39 1 4.7466 -5.1252 -4.7346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102537837.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:01 Heat of formation + Delta-G solvation = 17.062471 kcal Electronic energy + Delta-G solvation = -27040.118175 eV Core-core repulsion = 23025.126408 eV Total energy + Delta-G solvation = -4014.991768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08064 -43.15064 -41.39636 -39.67815 -35.63012 -35.10450 -34.72306 -33.11093 -31.14965 -30.91135 -29.72294 -27.90963 -26.73783 -25.75027 -24.72085 -22.73670 -21.94007 -20.53253 -19.81484 -19.44409 -18.92811 -18.51694 -18.25334 -17.58406 -17.19174 -17.00464 -16.70474 -16.19800 -16.06195 -15.90412 -15.47711 -15.05198 -14.90294 -14.74842 -14.44166 -14.32505 -13.95032 -13.78775 -13.54219 -13.39983 -13.17733 -13.07241 -13.04103 -12.81187 -12.55346 -12.40705 -12.18067 -12.16660 -11.90340 -11.35247 -11.21588 -10.99411 -10.62759 -10.32954 -9.88195 -9.44479 -9.07298 -8.56212 -6.28654 -0.46837 -0.23262 0.87973 1.28548 1.38988 1.41556 1.48506 1.86441 1.89732 2.21154 2.38500 2.59739 2.73073 2.80114 2.82019 3.11191 3.23645 3.35566 3.55038 3.58225 3.62357 3.72725 3.82822 3.97518 4.12867 4.21234 4.31765 4.39386 4.49551 4.59556 4.74522 4.80387 4.89432 4.92982 5.05793 5.16555 5.21675 5.41384 5.65280 5.89030 6.05131 6.21697 6.79769 6.88262 6.94445 8.56428 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.003779 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.319683 B = 7408.462072 C = 9021.644393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.049 3.951 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.256 1.256 6 H -0.236 1.236 7 C -0.533 4.533 8 H 0.057 0.943 9 S -0.162 6.162 10 C -0.102 4.102 11 C 0.557 3.443 12 O -0.554 6.554 13 N -0.614 5.614 14 C 0.067 3.933 15 C 0.084 3.916 16 H 0.173 0.827 17 C -0.114 4.114 18 C 0.107 3.893 19 H 0.136 0.864 20 C 0.020 3.980 21 N -0.444 5.444 22 C 0.471 3.529 23 N -0.505 5.505 24 C 0.158 3.842 25 C -0.036 4.036 26 F -0.122 7.122 27 C 0.141 3.859 28 N -0.543 5.543 29 H 0.278 0.722 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.218 0.782 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.768 -21.351 -3.239 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.157 4.157 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.160 1.160 7 C -0.681 4.681 8 H 0.076 0.924 9 S 0.064 5.936 10 C -0.253 4.253 11 C 0.344 3.656 12 O -0.432 6.432 13 N -0.349 5.349 14 C -0.057 4.057 15 C -0.022 4.022 16 H 0.190 0.810 17 C -0.152 4.152 18 C 0.004 3.996 19 H 0.154 0.846 20 C -0.108 4.108 21 N -0.165 5.165 22 C 0.116 3.884 23 N -0.221 5.221 24 C -0.011 4.011 25 C -0.061 4.061 26 F -0.101 7.101 27 C -0.027 4.027 28 N -0.261 5.261 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.147 0.853 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.234 0.766 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 16.745 -20.181 -2.591 26.351 hybrid contribution -2.793 0.404 -1.311 3.112 sum 13.952 -19.777 -3.902 24.516 Atomic orbital electron populations 1.70017 1.07328 1.29158 1.48816 1.25555 0.95268 1.02228 0.92629 0.85874 0.80724 0.79488 0.80339 1.18608 1.17989 1.15985 1.22419 0.90197 0.96624 1.58826 0.92431 1.84624 1.06465 1.04986 1.97517 1.23158 0.96026 1.00168 1.05927 1.19463 0.89083 0.81772 0.75234 1.90688 1.59160 1.42481 1.50884 1.49119 1.08877 1.03859 1.73083 1.23375 0.95600 0.84519 1.02225 1.24998 0.93135 0.98624 0.85440 0.80951 1.24068 1.00014 0.93065 0.98044 1.24296 0.82575 0.96957 0.95753 0.84636 1.23930 1.00334 0.87946 0.98557 1.61612 1.18585 1.34655 1.01605 1.21387 0.89245 0.84952 0.92844 1.68170 1.07467 1.23823 1.22672 1.23893 0.92067 0.98576 0.86581 1.19410 0.94203 0.99289 0.93199 1.91558 1.62152 1.96536 1.59814 1.23630 0.88306 0.97222 0.93508 1.68420 1.21160 1.28944 1.07616 0.91228 0.88999 0.87620 0.93590 0.88708 0.87587 0.85334 0.89562 0.86322 0.76589 0.79239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 2 C 0.05 2.89 5.50 84.86 0.47 3.36 16 3 Si 0.91 45.06 27.74 68.60 1.90 46.96 16 4 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 7 C -0.53 -31.55 10.04 67.95 0.68 -30.87 16 8 H 0.06 3.62 8.03 -2.91 -0.02 3.60 16 9 S -0.16 -8.40 18.55 -56.49 -1.05 -9.44 16 10 C -0.10 -4.14 5.44 71.23 0.39 -3.75 16 11 C 0.56 20.38 7.91 87.65 0.69 21.07 16 12 O -0.55 -24.18 16.23 -3.06 -0.05 -24.23 16 13 N -0.61 -16.08 2.95 -768.34 -2.26 -18.35 16 14 C 0.07 1.39 5.71 87.16 0.50 1.89 16 15 C 0.08 1.18 5.11 46.85 0.24 1.42 16 16 H 0.17 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.11 -1.28 6.81 33.47 0.23 -1.06 16 18 C 0.11 2.05 5.22 46.94 0.25 2.29 16 19 H 0.14 2.66 8.08 -2.39 -0.02 2.64 16 20 C 0.02 0.39 6.15 87.08 0.54 0.92 16 21 N -0.44 -8.11 5.37 -655.15 -3.52 -11.63 16 22 C 0.47 10.14 4.97 261.45 1.30 11.44 16 23 N -0.50 -9.70 10.30 -197.78 -2.04 -11.73 16 24 C 0.16 2.47 11.29 84.75 0.96 3.42 16 25 C -0.04 -0.65 7.38 22.53 0.17 -0.49 16 26 F -0.12 -2.29 17.30 44.97 0.78 -1.51 16 27 C 0.14 2.95 11.29 84.75 0.96 3.91 16 28 N -0.54 -12.99 7.66 -197.78 -1.52 -14.50 16 29 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.09 3.68 8.14 -2.40 -0.02 3.66 16 31 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 32 H 0.05 1.14 6.10 -2.39 -0.01 1.13 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 35 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 2.20 5.92 -2.39 -0.01 2.19 16 37 H 0.12 1.75 8.14 -2.39 -0.02 1.74 16 38 H 0.22 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -77.21 343.38 0.97 -76.25 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.06 Total: 10.30 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 7.36 Total: 13.56 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -9.03 Total: -111.88 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.05 Total: -9.44 kcal Total: -77.21 0.97 -76.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102537837.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.308 kcal (2) G-P(sol) polarization free energy of solvation -77.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds