Wall clock time and date at job start Tue Mar 31 2020 21:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46497 * 109.47174 * 185.00006 * 4 2 1 6 6 C 1.38718 * 119.99864 * 179.97438 * 5 4 2 7 7 N 1.32513 * 119.55294 * 359.73208 * 6 5 4 8 8 C 1.31670 * 121.81034 * 179.70815 * 7 6 5 9 9 C 1.39575 * 120.67778 * 0.56385 * 8 7 6 10 10 C 1.43199 * 120.47779 * 179.74854 * 9 8 7 11 11 N 8.95773 * 125.34888 * 238.32251 * 2 1 3 12 12 C 1.40358 * 119.04245 * 359.72051 * 9 8 7 13 13 C 1.38056 * 118.35644 * 0.02562 * 12 9 8 14 14 F 1.35101 * 120.39471 * 179.97438 * 13 12 9 15 15 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 16 16 C 1.34777 * 120.00258 * 275.00436 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 29 29 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 30 30 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 32 32 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 33 33 H 0.96998 * 120.00251 * 0.02562 * 5 4 2 34 34 H 1.08002 * 119.66275 * 180.26577 * 8 7 6 35 35 H 1.08002 * 120.81998 * 180.02562 * 12 9 8 36 36 H 0.96999 * 119.99694 * 94.99826 * 15 2 1 37 37 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 38 38 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 39 39 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1927 -1.4468 -2.2198 7 7 3.5243 -1.9461 -3.2494 8 6 4.1369 -2.5389 -4.2529 9 6 5.5262 -2.6729 -4.2600 10 6 6.1876 -3.3231 -5.3511 11 7 6.7125 -3.8368 -6.2178 12 6 6.2657 -2.1606 -3.1826 13 6 5.5833 -1.5421 -2.1541 14 9 6.2539 -1.0348 -1.0967 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.8589 1.1587 2.4115 18 6 2.6488 -0.7287 3.5878 19 16 2.7105 0.4346 4.9731 20 6 3.3121 -0.6309 6.2408 21 1 3.5201 -1.6677 6.0212 22 6 3.5178 -0.1380 7.5220 23 7 3.9678 -0.9340 8.4689 24 14 3.1561 1.6546 7.9024 25 1 1.7450 1.7920 8.3442 26 1 4.0608 2.1239 8.9824 27 1 3.3748 2.4733 6.6829 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4628 -0.4315 34 1 3.5581 -2.9296 -5.0768 35 1 7.3419 -2.2481 -3.1588 36 1 2.2490 -1.6316 1.1527 37 1 1.9759 -1.5504 3.8327 38 1 3.6480 -1.1212 3.3986 39 1 4.1119 -0.5895 9.3642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107653855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:54 Heat of formation + Delta-G solvation = -14.574768 kcal Electronic energy + Delta-G solvation = -25028.825663 eV Core-core repulsion = 21012.462001 eV Total energy + Delta-G solvation = -4016.363661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.33423 -40.86327 -39.71677 -37.57331 -36.72581 -34.80071 -32.86739 -32.47896 -31.90406 -30.43647 -28.80087 -26.77761 -25.65597 -24.53986 -23.67502 -21.92699 -20.56544 -19.81186 -18.76961 -17.98684 -17.84020 -16.82181 -16.72246 -16.42935 -16.30439 -15.37820 -15.25281 -15.05552 -15.00408 -14.69367 -14.35140 -13.99338 -13.92996 -13.69406 -13.51079 -13.49908 -13.24680 -13.08467 -12.97452 -12.83438 -12.71568 -12.23651 -12.00708 -11.35990 -11.30317 -11.04698 -10.84914 -10.65512 -10.35918 -10.29814 -9.90127 -9.64303 -9.21800 -9.03902 -8.55959 -8.31033 -6.97096 -6.32701 -4.05119 0.12707 0.45861 2.18416 2.38683 2.44609 2.67900 2.83579 3.21273 3.27645 3.29910 3.31861 3.46486 3.55448 3.58345 3.73032 4.12965 4.25427 4.29156 4.36750 4.66731 4.72996 4.80956 4.97303 5.06330 5.07723 5.13511 5.23007 5.24401 5.27233 5.44988 5.67955 5.71587 5.75603 5.93628 5.98895 6.33164 6.40554 6.59371 7.03156 7.37522 7.43796 7.90204 8.34458 8.37850 9.13222 10.76473 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.002220 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.725528 B =12609.096566 C =13766.662042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.129 3.871 3 H 0.096 0.904 4 C 0.121 3.879 5 N -0.703 5.703 6 C 0.413 3.587 7 N -0.518 5.518 8 C 0.204 3.796 9 C -0.128 4.128 10 C 0.266 3.734 11 N -0.418 5.418 12 C -0.018 4.018 13 C -0.018 4.018 14 F -0.125 7.125 15 N -0.737 5.737 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.126 4.126 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.420 0.580 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -2.794 -26.097 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 H 0.114 0.886 4 C -0.003 4.003 5 N -0.333 5.333 6 C 0.172 3.828 7 N -0.235 5.235 8 C 0.042 3.958 9 C -0.137 4.137 10 C -0.050 4.050 11 N -0.094 5.094 12 C -0.046 4.046 13 C -0.045 4.045 14 F -0.103 7.103 15 N -0.392 5.392 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.276 4.276 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.259 0.741 34 H 0.191 0.809 35 H 0.174 0.826 36 H 0.235 0.765 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.724 -1.488 -27.060 27.238 hybrid contribution 1.415 -0.900 1.262 2.098 sum -1.309 -2.389 -25.799 25.942 Atomic orbital electron populations 1.22105 0.93822 1.02699 1.03311 1.21191 0.95251 0.97944 0.83218 0.88636 1.21805 0.78497 1.01959 0.98020 1.44730 1.07574 1.59837 1.21178 1.18613 0.86535 0.89178 0.88455 1.67434 1.38035 1.16117 1.01912 1.22683 0.89693 0.89280 0.94150 1.16447 0.93620 1.09822 0.93853 1.25183 0.93800 0.93220 0.92788 1.81310 1.07536 1.10077 1.10459 1.21364 1.01461 0.91863 0.89927 1.17675 0.88993 1.08249 0.89555 1.91564 1.79769 1.85351 1.53662 1.46128 1.69497 1.14153 1.09470 1.20323 0.76784 0.87218 0.83791 1.90711 1.48169 1.15706 1.84327 1.23293 1.04512 1.03554 0.96269 1.84792 1.87230 1.16332 1.03062 1.22304 1.50761 0.98658 0.95267 0.89376 1.24722 0.93356 0.98302 0.94964 1.69938 1.43309 1.35791 1.02529 0.86730 0.79327 0.85181 0.80567 1.19212 1.19921 1.15952 0.91039 0.91365 0.92028 0.90226 0.89485 0.74096 0.80887 0.82644 0.76534 0.88451 0.88443 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.13 1.08 2.73 -67.93 -0.19 0.89 16 3 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 4 C 0.12 0.74 5.23 -4.04 -0.02 0.72 16 5 N -0.70 -4.95 5.52 -60.36 -0.33 -5.29 16 6 C 0.41 3.01 7.48 -155.05 -1.16 1.85 16 7 N -0.52 -3.41 9.53 -12.05 -0.11 -3.53 16 8 C 0.20 1.01 10.91 -17.12 -0.19 0.82 16 9 C -0.13 -0.71 5.75 -106.68 -0.61 -1.32 16 10 C 0.27 1.93 15.37 -22.47 -0.35 1.58 16 11 N -0.42 -4.14 18.54 41.84 0.78 -3.36 16 12 C -0.02 -0.10 9.88 -38.85 -0.38 -0.49 16 13 C -0.02 -0.13 7.34 -39.16 -0.29 -0.42 16 14 F -0.12 -1.11 16.62 2.25 0.04 -1.08 16 15 N -0.74 -7.48 4.52 -53.81 -0.24 -7.72 16 16 C 0.53 8.29 7.81 -10.98 -0.09 8.20 16 17 O -0.52 -9.98 15.52 5.56 0.09 -9.89 16 18 C -0.13 -2.25 6.16 36.01 0.22 -2.02 16 19 S -0.14 -3.41 18.55 -107.50 -1.99 -5.41 16 20 C -0.52 -14.68 10.04 30.94 0.31 -14.37 16 21 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 23 N -0.88 -26.14 13.97 55.49 0.78 -25.36 16 24 Si 0.86 21.37 27.74 -169.99 -4.72 16.66 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.42 3.27 7.58 -40.82 -0.31 2.96 16 34 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 35 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.40 3.20 8.60 -40.82 -0.35 2.85 16 37 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.10 1.62 8.14 -51.92 -0.42 1.19 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -34.30 368.36 -7.09 -41.39 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.44 Total: 0.88 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.48 Total: -2.83 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.86 Total: -45.27 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.72 Total: 16.66 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.30 -7.09 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107653855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.819 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds