Wall clock time and date at job start Tue Mar 31 2020 21:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46497 * 109.47174 * 185.00006 * 4 2 1 6 6 C 1.38718 * 119.99864 * 179.97438 * 5 4 2 7 7 N 1.32513 * 119.55294 * 359.73208 * 6 5 4 8 8 C 1.31670 * 121.81034 * 179.70815 * 7 6 5 9 9 C 1.39575 * 120.67778 * 0.56385 * 8 7 6 10 10 C 1.43199 * 120.47779 * 179.74854 * 9 8 7 11 11 N 8.95773 * 125.34888 * 238.32251 * 2 1 3 12 12 C 1.40358 * 119.04245 * 359.72051 * 9 8 7 13 13 C 1.38056 * 118.35644 * 0.02562 * 12 9 8 14 14 F 1.35101 * 120.39471 * 179.97438 * 13 12 9 15 15 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 16 16 C 1.34777 * 120.00258 * 275.00436 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 29 29 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 30 30 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 32 32 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 33 33 H 0.96998 * 120.00251 * 0.02562 * 5 4 2 34 34 H 1.08002 * 119.66275 * 180.26577 * 8 7 6 35 35 H 1.08002 * 120.81998 * 180.02562 * 12 9 8 36 36 H 0.96999 * 119.99694 * 94.99826 * 15 2 1 37 37 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 38 38 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 39 39 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1927 -1.4468 -2.2198 7 7 3.5243 -1.9461 -3.2494 8 6 4.1369 -2.5389 -4.2529 9 6 5.5262 -2.6729 -4.2600 10 6 6.1876 -3.3231 -5.3511 11 7 6.7125 -3.8368 -6.2178 12 6 6.2657 -2.1606 -3.1826 13 6 5.5833 -1.5421 -2.1541 14 9 6.2539 -1.0348 -1.0967 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.8589 1.1587 2.4115 18 6 2.6488 -0.7287 3.5878 19 16 2.7105 0.4346 4.9731 20 6 3.3121 -0.6309 6.2408 21 1 3.5201 -1.6677 6.0212 22 6 3.5178 -0.1380 7.5220 23 7 3.9678 -0.9340 8.4689 24 14 3.1561 1.6546 7.9024 25 1 1.7450 1.7920 8.3442 26 1 4.0608 2.1239 8.9824 27 1 3.3748 2.4733 6.6829 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4628 -0.4315 34 1 3.5581 -2.9296 -5.0768 35 1 7.3419 -2.2481 -3.1588 36 1 2.2490 -1.6316 1.1527 37 1 1.9759 -1.5504 3.8327 38 1 3.6480 -1.1212 3.3986 39 1 4.1119 -0.5895 9.3642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107653855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:53 Heat of formation + Delta-G solvation = -38.054985 kcal Electronic energy + Delta-G solvation = -25029.843841 eV Core-core repulsion = 21012.462001 eV Total energy + Delta-G solvation = -4017.381840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.92048 -41.38257 -40.80321 -38.28711 -37.45116 -35.57220 -34.66653 -33.37969 -32.86803 -31.05279 -30.02008 -27.84471 -27.32633 -25.01961 -24.23063 -22.76376 -21.61423 -20.35665 -19.95834 -19.19853 -18.44978 -17.99378 -17.43739 -17.19735 -17.06571 -16.96499 -16.45728 -15.97411 -15.87345 -15.69855 -15.25100 -15.01254 -14.80318 -14.63015 -14.52112 -14.22762 -14.13005 -14.00628 -13.94234 -13.57825 -13.38356 -13.33209 -13.22423 -13.01184 -12.87850 -12.58826 -12.01763 -11.85714 -11.37342 -11.16792 -10.97180 -10.84551 -10.78868 -10.52692 -10.20529 -8.98340 -8.82870 -8.51161 -6.21530 -0.36075 0.00095 0.99922 1.31707 1.46923 1.56036 1.56423 1.61061 1.87574 1.90020 2.22671 2.26644 2.72134 2.77570 2.78177 2.87172 3.05506 3.27579 3.63865 3.73664 3.87418 3.89174 4.10121 4.23834 4.29013 4.37925 4.48496 4.63956 4.66935 4.75662 4.78586 4.84788 5.04022 5.23748 5.34928 5.47334 5.70966 5.85347 6.05198 6.12048 6.43908 6.47128 6.86731 6.94092 7.19056 8.61165 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.002220 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.725528 B =12609.096566 C =13766.662042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.078 0.922 4 C 0.133 3.867 5 N -0.707 5.707 6 C 0.410 3.590 7 N -0.524 5.524 8 C 0.217 3.783 9 C -0.128 4.128 10 C 0.294 3.706 11 N -0.466 5.466 12 C -0.008 4.008 13 C -0.039 4.039 14 F -0.139 7.139 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.557 6.557 18 C -0.114 4.114 19 S -0.173 6.173 20 C -0.529 4.529 21 H 0.062 0.938 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.261 1.261 27 H -0.236 1.236 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.416 0.584 34 H 0.203 0.797 35 H 0.169 0.831 36 H 0.415 0.585 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 -2.875 -28.245 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 H 0.097 0.903 4 C 0.009 3.991 5 N -0.337 5.337 6 C 0.170 3.830 7 N -0.241 5.241 8 C 0.055 3.945 9 C -0.137 4.137 10 C -0.021 4.021 11 N -0.142 5.142 12 C -0.036 4.036 13 C -0.065 4.065 14 F -0.118 7.118 15 N -0.366 5.366 16 C 0.325 3.675 17 O -0.435 6.435 18 C -0.265 4.265 19 S 0.053 5.947 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.162 4.162 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.187 1.187 26 H -0.185 1.185 27 H -0.159 1.159 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.253 0.747 34 H 0.220 0.780 35 H 0.187 0.813 36 H 0.252 0.748 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.656 -1.613 -29.248 29.520 hybrid contribution 1.681 -0.994 1.773 2.638 sum -1.975 -2.607 -27.475 27.669 Atomic orbital electron populations 1.22064 0.93017 1.03536 1.02902 1.21310 0.95787 0.97224 0.82965 0.90346 1.21759 0.77999 1.02490 0.96834 1.44766 1.07855 1.59911 1.21124 1.18702 0.86561 0.89136 0.88649 1.67525 1.37967 1.16568 1.02048 1.23149 0.89567 0.87674 0.94114 1.16396 0.93907 1.10139 0.93302 1.25243 0.92651 0.92052 0.92148 1.81347 1.08993 1.11851 1.12035 1.21511 1.02234 0.90575 0.89255 1.17801 0.89216 1.09627 0.89874 1.91527 1.80070 1.85757 1.54405 1.45882 1.67614 1.14644 1.08421 1.19859 0.76670 0.86522 0.84403 1.90704 1.50420 1.17342 1.84999 1.23295 1.06132 1.02308 0.94765 1.84689 1.86974 1.18259 1.04777 1.22471 1.50289 0.98164 0.96706 0.92019 1.25587 0.93308 1.02280 0.94982 1.70021 1.44612 1.37724 1.03177 0.85855 0.79497 0.80390 0.80552 1.18721 1.18527 1.15946 0.94132 0.89117 0.90541 0.88852 0.88172 0.74657 0.78001 0.81343 0.74821 0.87034 0.86941 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 71.98 0.68 -1.44 16 2 C 0.13 1.92 2.73 44.99 0.12 2.04 16 3 H 0.08 1.49 7.58 -2.39 -0.02 1.48 16 4 C 0.13 1.22 5.23 86.38 0.45 1.68 16 5 N -0.71 -8.44 5.52 -344.87 -1.90 -10.35 16 6 C 0.41 5.06 7.48 133.23 1.00 6.06 16 7 N -0.52 -5.32 9.53 -192.05 -1.83 -7.15 16 8 C 0.22 1.46 10.91 85.04 0.93 2.39 16 9 C -0.13 -1.11 5.75 -21.19 -0.12 -1.24 16 10 C 0.29 3.75 15.37 88.33 1.36 5.11 16 11 N -0.47 -8.76 18.54 19.00 0.35 -8.41 16 12 C -0.01 -0.08 9.88 22.74 0.22 0.15 16 13 C -0.04 -0.51 7.34 22.54 0.17 -0.34 16 14 F -0.14 -2.38 16.62 44.97 0.75 -1.63 16 15 N -0.71 -13.04 4.52 -442.54 -2.00 -15.04 16 16 C 0.54 16.22 7.81 87.66 0.68 16.91 16 17 O -0.56 -21.43 15.52 -3.03 -0.05 -21.47 16 18 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 19 S -0.17 -8.44 18.55 -56.49 -1.05 -9.49 16 20 C -0.53 -30.17 10.04 67.96 0.68 -29.48 16 21 H 0.06 3.72 8.03 -2.91 -0.02 3.69 16 22 C 0.04 2.54 5.50 84.86 0.47 3.00 16 23 N -0.92 -55.34 13.97 21.65 0.30 -55.04 16 24 Si 0.92 44.35 27.74 68.60 1.90 46.25 16 25 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 26 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.24 -11.34 6.74 99.48 0.67 -10.67 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.42 5.85 7.58 -92.71 -0.70 5.14 16 34 H 0.20 0.12 8.06 -2.91 -0.02 0.10 16 35 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 36 H 0.41 5.50 8.60 -92.71 -0.80 4.70 16 37 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 38 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 39 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -75.93 368.36 3.15 -72.78 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -0.41 Total: 8.24 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 7.08 Total: 1.30 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -5.08 Total: -95.98 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.75 Total: -1.63 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.05 Total: -9.49 kcal Total: -75.93 3.15 -72.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107653855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.725 kcal (2) G-P(sol) polarization free energy of solvation -75.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds