Wall clock time and date at job start Tue Mar 31 2020 20:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47364 * 239.99842 * 3 2 1 5 5 H 1.48504 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47205 * 119.99374 * 3 2 1 7 7 C 1.37879 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99949 * 184.95697 * 7 2 1 9 9 C 1.50699 * 120.00151 * 4.95823 * 7 2 1 10 10 C 1.53000 * 115.55131 * 84.77606 * 9 7 2 11 11 N 1.46502 * 109.47222 * 65.06298 * 10 9 7 12 12 C 1.34771 * 120.00339 * 175.01702 * 11 10 9 13 13 O 1.21359 * 119.99631 * 5.05394 * 12 11 10 14 14 C 1.49447 * 120.00258 * 185.05084 * 12 11 10 15 15 O 1.21348 * 120.00346 * 5.12946 * 14 12 11 16 16 N 1.34783 * 120.00177 * 185.12682 * 14 12 11 17 17 C 1.47026 * 125.64682 * 359.69239 * 16 14 12 18 18 C 1.54308 * 107.27567 * 180.97052 * 17 16 14 19 19 F 1.39901 * 110.92202 * 264.10898 * 18 17 16 20 20 F 1.39905 * 110.74414 * 140.85686 * 18 17 16 21 21 C 1.55158 * 102.86616 * 22.52684 * 18 17 16 22 22 F 1.39901 * 111.00514 * 206.23293 * 21 18 17 23 23 F 1.39899 * 111.03806 * 82.39006 * 21 18 17 24 24 C 1.47423 * 125.64906 * 180.02562 * 16 14 12 25 25 C 1.53001 * 117.49912 * 230.44374 * 9 7 2 26 26 C 1.53002 * 117.49734 * 299.10418 * 9 7 2 27 27 H 0.96998 * 119.99594 * 5.00421 * 1 2 3 28 28 H 1.09004 * 109.47099 * 305.06237 * 10 9 7 29 29 H 1.08997 * 109.47177 * 185.06273 * 10 9 7 30 30 H 0.97006 * 119.99516 * 354.73958 * 11 10 9 31 31 H 1.09003 * 109.87843 * 300.51822 * 17 16 14 32 32 H 1.08997 * 109.88236 * 61.67624 * 17 16 14 33 33 H 1.08999 * 110.36261 * 274.67050 * 24 16 14 34 34 H 1.08996 * 110.36809 * 36.87990 * 24 16 14 35 35 H 1.08997 * 117.50489 * 215.00188 * 25 9 7 36 36 H 1.08999 * 117.49722 * 0.02630 * 25 9 7 37 37 H 1.09000 * 117.49975 * 359.97438 * 26 9 7 38 38 H 1.09003 * 117.49405 * 144.97836 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 0.0814 9 6 1.2552 -2.4968 -0.1117 10 6 0.9213 -2.9455 -1.5358 11 7 2.1616 -3.2323 -2.2609 12 6 2.1110 -3.7418 -3.5075 13 8 1.0414 -3.8773 -4.0647 14 6 3.3720 -4.1398 -4.2039 15 8 4.4317 -4.0921 -3.6146 16 7 3.3323 -4.5519 -5.4866 17 6 2.1219 -4.6634 -6.3137 18 6 2.5580 -5.1958 -7.6948 19 9 2.7437 -4.1450 -8.5995 20 9 1.6248 -6.1134 -8.1894 21 6 3.9065 -5.8977 -7.3843 22 9 4.7301 -5.9241 -8.5149 23 9 3.6980 -7.1893 -6.8888 24 6 4.4945 -4.9720 -6.2904 25 6 1.5727 -3.5852 0.9157 26 6 0.2446 -2.8275 0.9884 27 1 -0.4849 0.8369 -0.0733 28 1 0.3760 -2.1528 -2.0481 29 1 0.3060 -3.8444 -1.4987 30 1 3.0192 -3.0517 -1.8451 31 1 1.4198 -5.3574 -5.8515 32 1 1.6580 -3.6834 -6.4259 33 1 4.9745 -4.1054 -6.7449 34 1 5.2064 -5.5180 -5.6715 35 1 1.5437 -4.6208 0.5772 36 1 2.3232 -3.3588 1.6731 37 1 0.1220 -2.1030 1.7936 38 1 -0.6583 -3.3644 0.6975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118033064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:52 Heat of formation + Delta-G solvation = -219.781402 kcal Electronic energy + Delta-G solvation = -29990.499111 eV Core-core repulsion = 24948.334659 eV Total energy + Delta-G solvation = -5042.164451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.22975 -49.08714 -48.21556 -47.51755 -40.77514 -38.66593 -37.39349 -36.81137 -33.63783 -32.05171 -31.10716 -29.66010 -27.30495 -25.68351 -24.98641 -22.88479 -22.32131 -21.23541 -20.16483 -19.62876 -19.05474 -18.68368 -17.77140 -17.77024 -17.17722 -16.77085 -16.43586 -16.25114 -16.09403 -15.15555 -15.07582 -14.94379 -14.76681 -14.58762 -14.51560 -14.30559 -14.15548 -14.10421 -13.84037 -13.53893 -13.51300 -13.21086 -13.09059 -12.81613 -12.59301 -12.03080 -11.71379 -11.59968 -11.26178 -11.08430 -10.98445 -10.60534 -10.32460 -9.75653 -9.48335 -9.46877 -9.20702 -8.67491 -8.48474 -8.26948 -6.17287 -4.26655 1.39545 1.75179 1.96758 2.61111 2.80683 3.15511 3.20189 3.23224 3.29129 3.31391 3.40130 3.51751 4.02345 4.14249 4.29585 4.54714 4.74274 4.86270 4.96773 5.02250 5.11498 5.24947 5.36510 5.84842 6.18925 6.28736 6.36578 6.48141 6.54481 6.65581 6.85100 7.01325 7.21418 7.30461 7.44883 7.72809 7.86147 8.21936 8.27766 8.75640 9.41727 10.90611 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.002848 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.535713 B = 9829.008461 C =10135.854546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.020 3.980 10 C 0.159 3.841 11 N -0.660 5.660 12 C 0.500 3.500 13 O -0.532 6.532 14 C 0.536 3.464 15 O -0.498 6.498 16 N -0.600 5.600 17 C 0.079 3.921 18 C 0.249 3.751 19 F -0.159 7.159 20 F -0.161 7.161 21 C 0.248 3.752 22 F -0.161 7.161 23 F -0.157 7.157 24 C 0.074 3.926 25 C -0.210 4.210 26 C -0.138 4.138 27 H 0.263 0.737 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.415 0.585 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 -10.525 -14.062 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.019 3.981 10 C 0.037 3.963 11 N -0.309 5.309 12 C 0.278 3.722 13 O -0.411 6.411 14 C 0.321 3.679 15 O -0.370 6.370 16 N -0.338 5.338 17 C -0.045 4.045 18 C 0.211 3.789 19 F -0.140 7.140 20 F -0.142 7.142 21 C 0.209 3.791 22 F -0.142 7.142 23 F -0.137 7.137 24 C -0.049 4.049 25 C -0.247 4.247 26 C -0.176 4.176 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.252 0.748 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.451 -10.447 -13.946 18.258 hybrid contribution 0.766 0.827 -0.288 1.163 sum 6.217 -9.621 -14.234 18.271 Atomic orbital electron populations 1.69989 1.05854 1.27228 1.47890 1.24972 0.94823 0.99005 0.94120 0.86701 0.79710 0.83098 0.78794 1.20149 1.21220 1.20114 1.20345 0.92688 0.88604 1.52437 0.92068 1.19023 0.99914 0.93599 0.85564 1.21275 0.83002 0.98700 0.93288 1.45910 1.13101 1.58525 1.13363 1.19534 0.88046 0.81022 0.83562 1.90726 1.29910 1.55233 1.65271 1.20419 0.90730 0.77342 0.79457 1.90808 1.31446 1.51085 1.63663 1.47792 1.07628 1.66889 1.11474 1.23140 0.88748 1.07060 0.85544 1.22615 0.87395 0.79948 0.88939 1.93143 1.95159 1.56436 1.69227 1.93139 1.66407 1.65678 1.88926 1.22644 0.89655 0.82364 0.84452 1.93127 1.73085 1.96574 1.51379 1.93143 1.94967 1.38458 1.87168 1.23179 0.90472 0.99126 0.92152 1.23041 1.00785 0.95502 1.05363 1.22492 0.90759 1.01279 1.03110 0.92725 0.90451 0.93251 0.74804 0.85360 0.85830 0.86266 0.85641 0.91603 0.90168 0.89317 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.15 12.66 55.43 0.70 -22.44 16 2 C 0.08 1.92 5.43 -17.82 -0.10 1.82 16 3 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.50 -12.44 8.58 -34.44 -0.30 -12.74 16 8 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 9 C 0.02 0.44 1.47 -155.66 -0.23 0.21 16 10 C 0.16 3.27 5.51 -4.04 -0.02 3.25 16 11 N -0.66 -11.95 5.46 -60.73 -0.33 -12.29 16 12 C 0.50 8.28 7.84 -11.59 -0.09 8.19 16 13 O -0.53 -9.33 14.16 5.49 0.08 -9.25 16 14 C 0.54 7.71 7.91 -11.58 -0.09 7.62 16 15 O -0.50 -7.96 16.76 5.50 0.09 -7.87 16 16 N -0.60 -6.84 3.33 -171.04 -0.57 -7.41 16 17 C 0.08 0.81 5.13 -3.07 -0.02 0.80 16 18 C 0.25 2.42 2.35 -24.90 -0.06 2.37 16 19 F -0.16 -1.60 16.92 2.25 0.04 -1.56 16 20 F -0.16 -1.69 16.92 2.25 0.04 -1.66 16 21 C 0.25 2.30 2.41 -24.59 -0.06 2.24 16 22 F -0.16 -1.53 16.96 2.25 0.04 -1.49 16 23 F -0.16 -1.62 16.97 2.25 0.04 -1.58 16 24 C 0.07 0.65 6.53 -2.54 -0.02 0.64 16 25 C -0.21 -4.16 9.96 -26.69 -0.27 -4.42 16 26 C -0.14 -2.99 9.15 -26.69 -0.24 -3.24 16 27 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 28 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 30 H 0.42 7.46 7.83 -40.82 -0.32 7.14 16 31 H 0.13 1.34 7.45 -51.93 -0.39 0.95 16 32 H 0.12 1.26 7.77 -51.93 -0.40 0.86 16 33 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.13 1.02 8.03 -51.93 -0.42 0.60 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -27.21 347.43 -5.18 -32.39 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.03 Total: 6.25 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -1.49 Total: 6.72 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -0.20 Total: -42.14 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.17 Total: -17.12 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.15 Total: -6.29 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.21 -5.18 -32.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118033064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.396 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds