Wall clock time and date at job start Tue Mar 31 2020 20:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47364 * 239.99842 * 3 2 1 5 5 H 1.48504 * 109.46799 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47205 * 119.99374 * 3 2 1 7 7 C 1.37879 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99949 * 184.95697 * 7 2 1 9 9 C 1.50699 * 120.00151 * 4.95823 * 7 2 1 10 10 C 1.53000 * 115.55131 * 84.77606 * 9 7 2 11 11 N 1.46502 * 109.47222 * 65.06298 * 10 9 7 12 12 C 1.34771 * 120.00339 * 175.01702 * 11 10 9 13 13 O 1.21359 * 119.99631 * 5.05394 * 12 11 10 14 14 C 1.49447 * 120.00258 * 185.05084 * 12 11 10 15 15 O 1.21348 * 120.00346 * 5.12946 * 14 12 11 16 16 N 1.34783 * 120.00177 * 185.12682 * 14 12 11 17 17 C 1.47026 * 125.64682 * 359.69239 * 16 14 12 18 18 C 1.54308 * 107.27567 * 180.97052 * 17 16 14 19 19 F 1.39901 * 110.92202 * 264.10898 * 18 17 16 20 20 F 1.39905 * 110.74414 * 140.85686 * 18 17 16 21 21 C 1.55158 * 102.86616 * 22.52684 * 18 17 16 22 22 F 1.39901 * 111.00514 * 206.23293 * 21 18 17 23 23 F 1.39899 * 111.03806 * 82.39006 * 21 18 17 24 24 C 1.47423 * 125.64906 * 180.02562 * 16 14 12 25 25 C 1.53001 * 117.49912 * 230.44374 * 9 7 2 26 26 C 1.53002 * 117.49734 * 299.10418 * 9 7 2 27 27 H 0.96998 * 119.99594 * 5.00421 * 1 2 3 28 28 H 1.09004 * 109.47099 * 305.06237 * 10 9 7 29 29 H 1.08997 * 109.47177 * 185.06273 * 10 9 7 30 30 H 0.97006 * 119.99516 * 354.73958 * 11 10 9 31 31 H 1.09003 * 109.87843 * 300.51822 * 17 16 14 32 32 H 1.08997 * 109.88236 * 61.67624 * 17 16 14 33 33 H 1.08999 * 110.36261 * 274.67050 * 24 16 14 34 34 H 1.08996 * 110.36809 * 36.87990 * 24 16 14 35 35 H 1.08997 * 117.50489 * 215.00188 * 25 9 7 36 36 H 1.08999 * 117.49722 * 0.02630 * 25 9 7 37 37 H 1.09000 * 117.49975 * 359.97438 * 26 9 7 38 38 H 1.09003 * 117.49405 * 144.97836 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 0.0814 9 6 1.2552 -2.4968 -0.1117 10 6 0.9213 -2.9455 -1.5358 11 7 2.1616 -3.2323 -2.2609 12 6 2.1110 -3.7418 -3.5075 13 8 1.0414 -3.8773 -4.0647 14 6 3.3720 -4.1398 -4.2039 15 8 4.4317 -4.0921 -3.6146 16 7 3.3323 -4.5519 -5.4866 17 6 2.1219 -4.6634 -6.3137 18 6 2.5580 -5.1958 -7.6948 19 9 2.7437 -4.1450 -8.5995 20 9 1.6248 -6.1134 -8.1894 21 6 3.9065 -5.8977 -7.3843 22 9 4.7301 -5.9241 -8.5149 23 9 3.6980 -7.1893 -6.8888 24 6 4.4945 -4.9720 -6.2904 25 6 1.5727 -3.5852 0.9157 26 6 0.2446 -2.8275 0.9884 27 1 -0.4849 0.8369 -0.0733 28 1 0.3760 -2.1528 -2.0481 29 1 0.3060 -3.8444 -1.4987 30 1 3.0192 -3.0517 -1.8451 31 1 1.4198 -5.3574 -5.8515 32 1 1.6580 -3.6834 -6.4259 33 1 4.9745 -4.1054 -6.7449 34 1 5.2064 -5.5180 -5.6715 35 1 1.5437 -4.6208 0.5772 36 1 2.3232 -3.3588 1.6731 37 1 0.1220 -2.1030 1.7936 38 1 -0.6583 -3.3644 0.6975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118033064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:52 Heat of formation + Delta-G solvation = -236.016911 kcal Electronic energy + Delta-G solvation = -29991.203135 eV Core-core repulsion = 24948.334659 eV Total energy + Delta-G solvation = -5042.868476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.01892 -49.87758 -49.00563 -48.31083 -41.94805 -39.95150 -38.53522 -38.32846 -35.11450 -33.95633 -32.04291 -30.46833 -28.79151 -27.44786 -26.15779 -23.96215 -23.19899 -22.87420 -21.47580 -21.10615 -19.92765 -19.73519 -18.87901 -18.57820 -18.22608 -17.84289 -17.70712 -17.38204 -17.25960 -16.64786 -16.45383 -16.02995 -15.88175 -15.79653 -15.46544 -15.37463 -15.03470 -14.94432 -14.92512 -14.80591 -14.45654 -14.42340 -14.28386 -13.91227 -13.66750 -13.48133 -13.39451 -12.96080 -12.82371 -12.78316 -12.38673 -12.06859 -12.00460 -11.40578 -11.00562 -10.84855 -10.45762 -10.40334 -10.13941 -9.94928 -8.10814 -6.23388 0.18036 0.72490 1.18801 1.44259 1.46470 1.52004 1.79055 1.95277 2.04198 2.12820 2.43624 2.56522 2.59520 3.16563 3.21632 3.24944 3.38905 3.57457 4.01228 4.11394 4.17833 4.20193 4.21469 4.49562 4.53218 4.63138 4.69937 4.92156 5.03911 5.29387 5.30773 5.46250 5.55444 5.69802 5.77500 6.09765 6.36652 6.51825 6.83216 6.89638 7.46715 8.96423 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.002848 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.535713 B = 9829.008461 C =10135.854546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.031 3.969 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.509 4.509 8 H 0.059 0.941 9 C -0.002 4.002 10 C 0.176 3.824 11 N -0.665 5.665 12 C 0.501 3.499 13 O -0.543 6.543 14 C 0.546 3.454 15 O -0.515 6.515 16 N -0.593 5.593 17 C 0.077 3.923 18 C 0.255 3.745 19 F -0.159 7.159 20 F -0.165 7.165 21 C 0.254 3.746 22 F -0.160 7.160 23 F -0.162 7.162 24 C 0.074 3.926 25 C -0.182 4.182 26 C -0.147 4.147 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.416 0.584 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -11.300 -14.992 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.170 4.170 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.077 0.923 9 C -0.002 4.002 10 C 0.053 3.947 11 N -0.315 5.315 12 C 0.281 3.719 13 O -0.422 6.422 14 C 0.329 3.671 15 O -0.389 6.389 16 N -0.329 5.329 17 C -0.046 4.046 18 C 0.216 3.784 19 F -0.140 7.140 20 F -0.146 7.146 21 C 0.215 3.785 22 F -0.140 7.140 23 F -0.143 7.143 24 C -0.048 4.048 25 C -0.219 4.219 26 C -0.185 4.185 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.253 0.747 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.737 -11.243 -14.913 19.854 hybrid contribution 0.361 1.013 -0.069 1.077 sum 7.098 -10.230 -14.982 19.481 Atomic orbital electron populations 1.70090 1.06914 1.27491 1.49402 1.25589 0.95438 1.01656 0.94312 0.85862 0.78540 0.79969 0.78745 1.19855 1.21510 1.19819 1.20638 0.92785 0.89877 1.51350 0.92318 1.19076 1.00551 0.93855 0.86743 1.20854 0.83798 0.97877 0.92190 1.45782 1.12220 1.59402 1.14078 1.19892 0.88924 0.80123 0.83002 1.90720 1.30764 1.55296 1.65391 1.19722 0.89328 0.77813 0.80213 1.90809 1.31446 1.52307 1.64329 1.47672 1.09096 1.65459 1.10721 1.23173 0.88402 1.07289 0.85785 1.22521 0.87552 0.79847 0.88436 1.93147 1.95151 1.56477 1.69192 1.93134 1.66696 1.65819 1.88930 1.22586 0.89278 0.82097 0.84544 1.93136 1.72980 1.96549 1.51334 1.93139 1.94988 1.38936 1.87230 1.23437 0.89492 1.00076 0.91814 1.23024 0.99121 0.96058 1.03696 1.22405 0.92100 1.01590 1.02405 0.93109 0.93653 0.92357 0.74681 0.85379 0.85647 0.83912 0.84498 0.89098 0.90105 0.91806 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.53 12.66 21.45 0.27 -48.26 16 2 C 0.03 1.60 5.43 84.66 0.46 2.06 16 3 Si 0.94 41.10 29.54 68.60 2.03 43.13 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.51 -25.13 8.58 25.60 0.22 -24.91 16 8 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 9 C 0.00 -0.07 1.47 -52.93 -0.08 -0.14 16 10 C 0.18 7.17 5.51 86.38 0.48 7.65 16 11 N -0.67 -23.64 5.46 -464.41 -2.54 -26.18 16 12 C 0.50 16.09 7.84 87.27 0.68 16.77 16 13 O -0.54 -18.54 14.16 -3.28 -0.05 -18.59 16 14 C 0.55 14.80 7.91 87.27 0.69 15.49 16 15 O -0.51 -15.57 16.76 -3.24 -0.05 -15.63 16 16 N -0.59 -12.32 3.33 -813.42 -2.71 -15.03 16 17 C 0.08 1.46 5.13 86.72 0.45 1.90 16 18 C 0.25 4.48 2.35 31.78 0.07 4.55 16 19 F -0.16 -2.88 16.92 44.97 0.76 -2.12 16 20 F -0.17 -3.23 16.92 44.97 0.76 -2.46 16 21 C 0.25 4.14 2.41 31.98 0.08 4.22 16 22 F -0.16 -2.65 16.96 44.97 0.76 -1.89 16 23 F -0.16 -3.03 16.97 44.97 0.76 -2.27 16 24 C 0.07 1.11 6.53 86.85 0.57 1.67 16 25 C -0.18 -6.93 9.96 30.62 0.30 -6.63 16 26 C -0.15 -6.32 9.15 30.62 0.28 -6.04 16 27 H 0.26 13.58 8.32 -92.71 -0.77 12.81 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 2.24 8.09 -2.39 -0.02 2.22 16 30 H 0.42 14.64 7.83 -92.70 -0.73 13.92 16 31 H 0.13 2.50 7.45 -2.39 -0.02 2.48 16 32 H 0.13 2.39 7.77 -2.39 -0.02 2.37 16 33 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.14 1.83 8.03 -2.39 -0.02 1.81 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.06 3.04 8.14 -2.39 -0.02 3.03 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -57.02 347.43 4.61 -52.40 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.41 Total: 20.29 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 4.20 Total: 16.60 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -4.97 Total: -89.47 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.10 Total: -34.22 kcal Atomic # 9 Polarization: -11.79 SS G_CDS: 3.05 Total: -8.74 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -57.02 4.61 -52.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118033064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.612 kcal (2) G-P(sol) polarization free energy of solvation -57.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds