Wall clock time and date at job start Tue Mar 31 2020 20:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34228 * 125.74247 * 2 1 4 4 C 1.38128 * 107.40998 * 180.02562 * 3 2 1 5 5 C 1.47277 * 126.43323 * 179.97438 * 4 3 2 6 6 O 1.21533 * 120.00232 * 180.02562 * 5 4 3 7 7 O 1.34778 * 119.99873 * 0.02562 * 5 4 3 8 8 C 1.35907 * 117.00062 * 175.01490 * 7 5 4 9 9 C 1.38836 * 120.01986 * 255.01707 * 8 7 5 10 10 C 1.38188 * 120.07650 * 179.72224 * 9 8 7 11 11 C 1.38153 * 120.12630 * 0.55058 * 10 9 8 12 12 C 1.38900 * 120.04306 * 359.72433 * 11 10 9 13 13 O 1.35744 * 120.03928 * 179.97438 * 12 11 10 14 14 C 1.34832 * 116.99917 * 185.61561 * 13 12 11 15 15 H 1.08003 * 119.99774 * 354.94511 * 14 13 12 16 16 C 1.38654 * 120.00173 * 174.94038 * 14 13 12 17 17 N 1.31552 * 120.00025 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47302 * 60.00381 * 18 16 14 20 20 H 1.48507 * 109.46928 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47492 * 299.99810 * 18 16 14 22 22 C 1.38572 * 120.02261 * 75.28950 * 8 7 5 23 23 C 1.41351 * 107.14123 * 0.02562 * 4 3 2 24 24 C 1.50694 * 125.99222 * 179.73627 * 23 4 3 25 25 F 1.39905 * 109.47024 * 210.00046 * 24 23 4 26 26 F 1.39905 * 109.47152 * 329.99812 * 24 23 4 27 27 N 1.30434 * 108.01555 * 359.97438 * 23 4 3 28 28 H 1.08993 * 109.47417 * 89.99093 * 1 2 3 29 29 H 1.08996 * 109.46853 * 209.99850 * 1 2 3 30 30 H 1.09004 * 109.46875 * 329.99059 * 1 2 3 31 31 H 1.08007 * 126.29862 * 0.03481 * 3 2 1 32 32 H 1.07996 * 119.95962 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.93755 * 180.25720 * 10 9 8 34 34 H 1.08003 * 119.98118 * 179.70181 * 11 10 9 35 35 H 0.97004 * 120.00324 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.06201 * 359.97438 * 22 8 7 37 37 H 1.09004 * 109.47800 * 89.99809 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5603 0.6550 -0.0006 5 6 4.7633 1.5047 -0.0013 6 8 5.8668 0.9956 -0.0023 7 8 4.6403 2.8468 -0.0010 8 6 5.7854 3.5713 0.1035 9 6 6.1058 4.1951 1.3018 10 6 7.2726 4.9273 1.4111 11 6 8.1182 5.0504 0.3255 12 6 7.7999 4.4332 -0.8775 13 8 8.6305 4.5547 -1.9442 14 6 8.2075 4.0303 -3.1122 15 1 7.2848 3.4703 -3.1500 16 6 8.9571 4.2101 -4.2647 17 7 10.0812 4.8919 -4.2186 18 14 8.3707 3.4842 -5.8829 19 1 7.0420 4.0511 -6.2271 20 1 9.3427 3.8161 -6.9554 21 1 8.2609 2.0090 -5.7529 22 6 6.6311 3.6926 -0.9875 23 6 3.5309 -0.7582 -0.0016 24 6 4.7315 -1.6689 -0.0081 25 9 4.4095 -2.8604 -0.6670 26 9 5.7902 -1.0402 -0.6722 27 7 2.2824 -1.1357 -0.0010 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.9161 2.1169 0.0005 32 1 5.4443 4.1046 2.1506 33 1 7.5217 5.4082 2.3455 34 1 9.0272 5.6272 0.4121 35 1 10.6059 5.0173 -5.0248 36 1 6.3815 3.2114 -1.9215 37 1 5.0260 -1.8894 1.0180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129662847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:34 Heat of formation + Delta-G solvation = -82.315391 kcal Electronic energy + Delta-G solvation = -28650.262722 eV Core-core repulsion = 24032.455679 eV Total energy + Delta-G solvation = -4617.807042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.91522 -46.89897 -41.89891 -40.53441 -38.68382 -36.87196 -35.64692 -34.19328 -32.27865 -31.31555 -29.60472 -28.92435 -28.78558 -26.13917 -25.37331 -23.83584 -22.19757 -21.63193 -20.86262 -20.20878 -18.22529 -18.22120 -17.67455 -17.58377 -16.95933 -16.64856 -16.17493 -16.09683 -15.74634 -15.58522 -15.09040 -14.37238 -14.16363 -14.11088 -13.81247 -13.61033 -13.47143 -13.40382 -13.28406 -13.13263 -12.89667 -12.74760 -12.53132 -11.85334 -11.65060 -11.50221 -11.34979 -11.26361 -11.01232 -10.81690 -10.48113 -10.27119 -10.24094 -10.08412 -9.49712 -9.21586 -8.83792 -8.13850 -7.32424 -6.44952 -4.03994 1.03260 1.42190 1.64773 1.85503 2.24223 3.06183 3.10356 3.16228 3.18756 3.20067 3.41829 3.82190 3.98592 4.12635 4.31208 4.50420 4.59203 4.60739 4.78131 4.86298 4.90183 5.07155 5.10924 5.23613 5.30767 5.60354 5.63700 5.80995 6.03014 6.18860 6.22879 6.36087 6.58450 6.90607 6.93685 7.03063 7.12096 7.16683 7.36916 7.63945 7.98919 8.22545 9.00376 9.66295 10.72472 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003592 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.778895 B = 7792.662103 C = 8917.382568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.354 5.354 3 C 0.132 3.868 4 C -0.244 4.244 5 C 0.524 3.476 6 O -0.465 6.465 7 O -0.296 6.296 8 C 0.124 3.876 9 C -0.212 4.212 10 C -0.066 4.066 11 C -0.187 4.187 12 C 0.164 3.836 13 O -0.170 6.170 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.043 3.957 17 N -0.861 5.861 18 Si 0.939 3.061 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.268 1.268 22 C -0.227 4.227 23 C 0.057 3.943 24 C 0.354 3.646 25 F -0.194 7.194 26 F -0.158 7.158 27 N -0.259 5.259 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.202 0.798 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.271 0.729 36 H 0.132 0.868 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.606 -8.212 10.684 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.133 5.133 3 C -0.019 4.019 4 C -0.257 4.257 5 C 0.367 3.633 6 O -0.349 6.349 7 O -0.212 6.212 8 C 0.083 3.917 9 C -0.231 4.231 10 C -0.084 4.084 11 C -0.206 4.206 12 C 0.109 3.891 13 O -0.073 6.073 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.162 4.162 17 N -0.495 5.495 18 Si 0.763 3.237 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.193 1.193 22 C -0.247 4.247 23 C -0.112 4.112 24 C 0.298 3.702 25 F -0.175 7.175 26 F -0.139 7.139 27 N -0.080 5.080 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.219 0.781 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.777 -9.208 10.417 24.175 hybrid contribution 0.076 0.339 -1.025 1.083 sum -19.701 -8.869 9.392 23.558 Atomic orbital electron populations 1.22141 0.72445 1.05490 1.04549 1.48439 1.07596 1.03517 1.53732 1.23388 0.89605 0.94314 0.94580 1.19137 0.91725 0.91345 1.23537 1.20122 0.88091 0.80919 0.74136 1.91002 1.26953 1.73535 1.43370 1.84493 1.34628 1.18268 1.83777 1.18141 0.85654 0.94015 0.93884 1.20478 0.99655 1.07112 0.95854 1.20469 0.93018 0.97532 0.97373 1.20328 1.02563 1.05833 0.91898 1.19120 0.88595 0.92154 0.89203 1.83991 1.39124 1.68507 1.15657 1.21284 1.08969 1.33510 0.83066 0.89162 1.25265 0.95474 0.96637 0.98833 1.70023 1.12688 1.37136 1.29657 0.85803 0.78583 0.79526 0.79742 1.19455 1.20141 1.19298 1.21224 0.96808 1.06938 0.99681 1.23006 0.94184 0.93153 1.00874 1.19441 0.80504 0.76043 0.94206 1.93029 1.93156 1.47390 1.83953 1.93243 1.55889 1.81743 1.82980 1.77197 1.00096 1.07526 1.23212 0.89601 0.88443 0.88368 0.78120 0.86826 0.86054 0.85927 0.91877 0.85009 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.33 11.44 59.85 0.68 1.02 16 2 N -0.35 -3.14 3.98 -67.58 -0.27 -3.41 16 3 C 0.13 1.26 11.33 -16.54 -0.19 1.07 16 4 C -0.24 -3.34 6.09 -105.08 -0.64 -3.98 16 5 C 0.52 9.12 7.77 34.40 0.27 9.39 16 6 O -0.46 -9.60 12.74 -19.29 -0.25 -9.84 16 7 O -0.30 -5.22 9.85 -24.92 -0.25 -5.47 16 8 C 0.12 2.50 5.19 -39.24 -0.20 2.30 16 9 C -0.21 -3.81 9.99 -39.38 -0.39 -4.21 16 10 C -0.07 -1.17 10.03 -39.63 -0.40 -1.56 16 11 C -0.19 -3.95 9.99 -39.37 -0.39 -4.35 16 12 C 0.16 4.08 6.65 -39.13 -0.26 3.82 16 13 O -0.17 -4.94 9.76 0.06 0.00 -4.94 16 14 C -0.39 -11.32 9.49 30.89 0.29 -11.02 16 15 H 0.09 2.47 5.20 -52.48 -0.27 2.20 16 16 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 17 N -0.86 -25.52 13.67 55.48 0.76 -24.77 16 18 Si 0.94 21.22 29.55 -169.99 -5.02 16.20 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 C -0.23 -5.31 8.59 -39.25 -0.34 -5.65 16 23 C 0.06 0.76 6.89 -82.01 -0.56 0.20 16 24 C 0.35 4.68 5.65 36.00 0.20 4.88 16 25 F -0.19 -2.66 17.27 2.25 0.04 -2.62 16 26 F -0.16 -2.73 13.60 2.25 0.03 -2.70 16 27 N -0.26 -3.14 12.43 33.90 0.42 -2.72 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.20 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.13 3.22 5.64 -52.49 -0.30 2.93 16 37 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -36.65 342.70 -4.48 -41.13 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.09 Total: 0.98 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.02 Total: -7.00 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.91 Total: -30.89 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.49 Total: -20.25 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.07 Total: -5.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.65 -4.48 -41.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129662847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.186 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds