Wall clock time and date at job start Tue Mar 31 2020 20:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34228 * 125.74247 * 2 1 4 4 C 1.38128 * 107.40998 * 180.02562 * 3 2 1 5 5 C 1.47277 * 126.43323 * 179.97438 * 4 3 2 6 6 O 1.21533 * 120.00232 * 180.02562 * 5 4 3 7 7 O 1.34778 * 119.99873 * 0.02562 * 5 4 3 8 8 C 1.35907 * 117.00062 * 175.01490 * 7 5 4 9 9 C 1.38836 * 120.01986 * 255.01707 * 8 7 5 10 10 C 1.38188 * 120.07650 * 179.72224 * 9 8 7 11 11 C 1.38153 * 120.12630 * 0.55058 * 10 9 8 12 12 C 1.38900 * 120.04306 * 359.72433 * 11 10 9 13 13 O 1.35744 * 120.03928 * 179.97438 * 12 11 10 14 14 C 1.34832 * 116.99917 * 185.61561 * 13 12 11 15 15 H 1.08003 * 119.99774 * 354.94511 * 14 13 12 16 16 C 1.38654 * 120.00173 * 174.94038 * 14 13 12 17 17 N 1.31552 * 120.00025 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47302 * 60.00381 * 18 16 14 20 20 H 1.48507 * 109.46928 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47492 * 299.99810 * 18 16 14 22 22 C 1.38572 * 120.02261 * 75.28950 * 8 7 5 23 23 C 1.41351 * 107.14123 * 0.02562 * 4 3 2 24 24 C 1.50694 * 125.99222 * 179.73627 * 23 4 3 25 25 F 1.39905 * 109.47024 * 210.00046 * 24 23 4 26 26 F 1.39905 * 109.47152 * 329.99812 * 24 23 4 27 27 N 1.30434 * 108.01555 * 359.97438 * 23 4 3 28 28 H 1.08993 * 109.47417 * 89.99093 * 1 2 3 29 29 H 1.08996 * 109.46853 * 209.99850 * 1 2 3 30 30 H 1.09004 * 109.46875 * 329.99059 * 1 2 3 31 31 H 1.08007 * 126.29862 * 0.03481 * 3 2 1 32 32 H 1.07996 * 119.95962 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.93755 * 180.25720 * 10 9 8 34 34 H 1.08003 * 119.98118 * 179.70181 * 11 10 9 35 35 H 0.97004 * 120.00324 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.06201 * 359.97438 * 22 8 7 37 37 H 1.09004 * 109.47800 * 89.99809 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5603 0.6550 -0.0006 5 6 4.7633 1.5047 -0.0013 6 8 5.8668 0.9956 -0.0023 7 8 4.6403 2.8468 -0.0010 8 6 5.7854 3.5713 0.1035 9 6 6.1058 4.1951 1.3018 10 6 7.2726 4.9273 1.4111 11 6 8.1182 5.0504 0.3255 12 6 7.7999 4.4332 -0.8775 13 8 8.6305 4.5547 -1.9442 14 6 8.2075 4.0303 -3.1122 15 1 7.2848 3.4703 -3.1500 16 6 8.9571 4.2101 -4.2647 17 7 10.0812 4.8919 -4.2186 18 14 8.3707 3.4842 -5.8829 19 1 7.0420 4.0511 -6.2271 20 1 9.3427 3.8161 -6.9554 21 1 8.2609 2.0090 -5.7529 22 6 6.6311 3.6926 -0.9875 23 6 3.5309 -0.7582 -0.0016 24 6 4.7315 -1.6689 -0.0081 25 9 4.4095 -2.8604 -0.6670 26 9 5.7902 -1.0402 -0.6722 27 7 2.2824 -1.1357 -0.0010 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.9161 2.1169 0.0005 32 1 5.4443 4.1046 2.1506 33 1 7.5217 5.4082 2.3455 34 1 9.0272 5.6272 0.4121 35 1 10.6059 5.0173 -5.0248 36 1 6.3815 3.2114 -1.9215 37 1 5.0260 -1.8894 1.0180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129662847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:33 Heat of formation + Delta-G solvation = -106.739633 kcal Electronic energy + Delta-G solvation = -28651.321836 eV Core-core repulsion = 24032.455679 eV Total energy + Delta-G solvation = -4618.866157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.02084 -48.04129 -42.81765 -41.93422 -40.44731 -38.45881 -37.25192 -34.92772 -34.33412 -32.34612 -31.15753 -30.54514 -29.58826 -27.50838 -26.96517 -25.03008 -23.52306 -23.13819 -22.05245 -21.32061 -20.08268 -19.46418 -19.15300 -18.61341 -18.05230 -17.98424 -17.44650 -17.30151 -16.84724 -16.71863 -16.62992 -16.07367 -15.77369 -15.58817 -15.26864 -14.97114 -14.67137 -14.56754 -14.46049 -14.18868 -14.04821 -13.73045 -13.63134 -13.50535 -13.12839 -12.98576 -12.74636 -12.61201 -12.48443 -12.24070 -12.19912 -11.84418 -11.71796 -11.43293 -10.86502 -10.85014 -10.12146 -9.76725 -9.12311 -8.52476 -6.21238 0.08883 0.20778 0.44728 0.59079 1.04007 1.29623 1.39777 1.45413 1.77032 1.87554 2.13388 2.49379 2.76419 2.93127 3.08341 3.21269 3.41471 3.69508 3.75018 3.84216 3.99887 4.05421 4.15683 4.23975 4.35658 4.41690 4.44227 4.57087 4.70696 4.71638 4.88537 4.98168 5.03252 5.40693 5.46771 5.54207 5.58203 5.61091 5.95350 6.02871 6.07523 6.81847 6.91693 7.67797 8.69798 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.003592 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.778895 B = 7792.662103 C = 8917.382568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.341 5.341 3 C 0.164 3.836 4 C -0.282 4.282 5 C 0.525 3.475 6 O -0.508 6.508 7 O -0.286 6.286 8 C 0.119 3.881 9 C -0.186 4.186 10 C -0.048 4.048 11 C -0.195 4.195 12 C 0.126 3.874 13 O -0.222 6.222 14 C -0.417 4.417 15 H 0.089 0.911 16 C -0.014 4.014 17 N -0.913 5.913 18 Si 1.011 2.989 19 H -0.255 1.255 20 H -0.262 1.262 21 H -0.266 1.266 22 C -0.246 4.246 23 C 0.046 3.954 24 C 0.345 3.655 25 F -0.200 7.200 26 F -0.187 7.187 27 N -0.275 5.275 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.244 0.756 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.129 0.871 35 H 0.276 0.724 36 H 0.106 0.894 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.439 -8.048 12.883 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.118 5.118 3 C 0.011 3.989 4 C -0.296 4.296 5 C 0.371 3.629 6 O -0.395 6.395 7 O -0.202 6.202 8 C 0.077 3.923 9 C -0.204 4.204 10 C -0.066 4.066 11 C -0.214 4.214 12 C 0.075 3.925 13 O -0.128 6.128 14 C -0.493 4.493 15 H 0.107 0.893 16 C -0.212 4.212 17 N -0.550 5.550 18 Si 0.830 3.170 19 H -0.179 1.179 20 H -0.186 1.186 21 H -0.191 1.191 22 C -0.266 4.266 23 C -0.123 4.123 24 C 0.289 3.711 25 F -0.181 7.181 26 F -0.168 7.168 27 N -0.097 5.097 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.260 0.740 32 H 0.178 0.822 33 H 0.194 0.806 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.690 -9.063 12.666 28.351 hybrid contribution 0.946 0.257 -1.364 1.679 sum -22.743 -8.806 11.302 26.880 Atomic orbital electron populations 1.22696 0.69057 1.07799 1.06180 1.48920 1.09194 1.02420 1.51286 1.23910 0.87939 0.95922 0.91125 1.19026 0.91967 0.90982 1.27582 1.20724 0.88910 0.80493 0.72773 1.90991 1.28873 1.73868 1.45728 1.84497 1.33086 1.18650 1.83918 1.18324 0.85812 0.94393 0.93728 1.21103 0.99621 1.03898 0.95806 1.21080 0.91554 0.95948 0.97982 1.20714 1.03639 1.05433 0.91585 1.19720 0.89303 0.93832 0.89630 1.83945 1.41249 1.70950 1.16649 1.21633 1.09444 1.34245 0.83997 0.89318 1.26465 0.95464 0.96919 1.02401 1.70142 1.14382 1.39584 1.30925 0.84776 0.78857 0.78507 0.74890 1.17947 1.18566 1.19080 1.21191 0.97718 1.07512 1.00175 1.22949 0.94553 0.93136 1.01638 1.19906 0.80207 0.75766 0.95199 1.93004 1.93161 1.47665 1.84280 1.93179 1.57475 1.82408 1.83724 1.77158 0.99799 1.09276 1.23471 0.88239 0.87695 0.84613 0.74041 0.82165 0.80623 0.85270 0.91533 0.87589 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.44 127.77 1.46 1.66 16 2 N -0.34 -4.80 3.98 -367.72 -1.46 -6.26 16 3 C 0.16 2.52 11.33 84.30 0.96 3.47 16 4 C -0.28 -7.31 6.09 -20.16 -0.12 -7.43 16 5 C 0.53 18.07 7.77 70.20 0.55 18.61 16 6 O -0.51 -21.59 12.74 19.73 0.25 -21.34 16 7 O -0.29 -9.67 9.85 -0.41 0.00 -9.67 16 8 C 0.12 4.67 5.19 22.49 0.12 4.79 16 9 C -0.19 -5.95 9.99 22.40 0.22 -5.73 16 10 C -0.05 -1.52 10.03 22.24 0.22 -1.30 16 11 C -0.19 -8.18 9.99 22.41 0.22 -7.96 16 12 C 0.13 6.57 6.65 22.56 0.15 6.72 16 13 O -0.22 -13.84 9.76 -22.69 -0.22 -14.07 16 14 C -0.42 -25.78 9.49 67.92 0.64 -25.13 16 15 H 0.09 5.26 5.20 -2.91 -0.02 5.25 16 16 C -0.01 -0.83 5.49 84.83 0.47 -0.36 16 17 N -0.91 -57.16 13.67 21.61 0.30 -56.86 16 18 Si 1.01 45.30 29.55 68.60 2.03 47.33 16 19 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 C -0.25 -12.01 8.59 22.49 0.19 -11.82 16 23 C 0.05 1.19 6.89 43.53 0.30 1.49 16 24 C 0.34 9.21 5.65 71.23 0.40 9.62 16 25 F -0.20 -5.54 17.27 44.97 0.78 -4.76 16 26 F -0.19 -6.81 13.60 44.97 0.61 -6.20 16 27 N -0.27 -6.15 12.43 -46.65 -0.58 -6.73 16 28 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.14 -0.59 8.14 -2.38 -0.02 -0.61 16 31 H 0.24 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 33 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.13 5.16 8.06 -2.91 -0.02 5.14 16 35 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.11 5.61 5.64 -2.91 -0.02 5.59 16 37 H 0.17 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -89.11 342.70 8.62 -80.48 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.15 Total: 11.43 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 5.78 Total: -13.36 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -1.75 Total: -69.85 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: 0.03 Total: -45.08 kcal Atomic # 9 Polarization: -12.35 SS G_CDS: 1.39 Total: -10.96 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -89.11 8.62 -80.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129662847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.257 kcal (2) G-P(sol) polarization free energy of solvation -89.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds