Wall clock time and date at job start Tue Mar 31 2020 20:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48497 * 109.47567 * 269.99992 * 3 2 1 5 5 H 1.48499 * 109.47247 * 30.00680 * 3 2 1 6 6 H 1.48501 * 109.46909 * 150.00279 * 3 2 1 7 7 C 1.38894 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99606 * 187.36265 * 7 2 1 9 9 N 1.37208 * 120.00489 * 7.35362 * 7 2 1 10 10 C 1.34769 * 120.00389 * 230.17352 * 9 7 2 11 11 O 1.21279 * 120.00073 * 184.96896 * 10 9 7 12 12 C 1.50700 * 120.00298 * 4.96749 * 10 9 7 13 13 C 1.52995 * 109.47322 * 184.99732 * 12 10 9 14 14 C 1.50708 * 109.46898 * 179.97438 * 13 12 10 15 15 N 1.30275 * 126.28017 * 90.02656 * 14 13 12 16 16 N 1.28667 * 109.38142 * 179.97438 * 15 14 13 17 17 C 1.30276 * 109.37921 * 359.97438 * 16 15 14 18 18 C 1.50700 * 126.28529 * 180.02562 * 17 16 15 19 19 F 1.39903 * 109.47189 * 119.97574 * 18 17 16 20 20 F 1.39894 * 109.47241 * 239.97998 * 18 17 16 21 21 O 1.34357 * 126.28354 * 269.71145 * 14 13 12 22 22 C 1.39428 * 119.99697 * 50.16723 * 9 7 2 23 23 C 1.39075 * 119.69657 * 5.00481 * 22 9 7 24 24 C 1.38383 * 119.09774 * 180.02562 * 23 22 9 25 25 C 1.38829 * 118.49169 * 0.02562 * 24 23 22 26 26 C 1.38146 * 119.31415 * 0.24813 * 25 24 23 27 27 N 1.31888 * 120.84781 * 359.47880 * 26 25 24 28 28 H 0.96996 * 119.99886 * 354.98616 * 1 2 3 29 29 H 1.09003 * 109.46783 * 304.99693 * 12 10 9 30 30 H 1.08993 * 109.47141 * 64.99384 * 12 10 9 31 31 H 1.09003 * 109.47160 * 299.99730 * 13 12 10 32 32 H 1.09003 * 109.47299 * 59.99969 * 13 12 10 33 33 H 1.09002 * 109.46447 * 359.97438 * 18 17 16 34 34 H 1.08003 * 120.44802 * 0.03991 * 23 22 9 35 35 H 1.08003 * 120.75165 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.34320 * 179.97438 * 25 24 23 37 37 H 1.07997 * 119.57851 * 179.74929 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0085 -1.2029 -0.0005 8 1 3.0819 -1.2068 0.1193 9 7 1.3310 -2.3862 -0.1531 10 6 1.5435 -3.4005 0.7085 11 8 1.0140 -4.4755 0.5222 12 6 2.4393 -3.1989 1.9035 13 6 2.6100 -4.5274 2.6429 14 6 3.5063 -4.3258 3.8376 15 7 3.1260 -4.0015 5.0406 16 7 4.1568 -3.9161 5.8058 17 6 5.2298 -4.1836 5.1171 18 6 6.6441 -4.1941 5.6375 19 9 7.1953 -5.4682 5.4642 20 9 7.4069 -3.2562 4.9336 21 8 4.8436 -4.4533 3.8587 22 6 0.4225 -2.5393 -1.1996 23 6 0.2843 -1.5291 -2.1454 24 6 -0.6215 -1.6938 -3.1786 25 6 -1.3611 -2.8676 -3.2301 26 6 -1.1764 -3.8268 -2.2532 27 7 -0.3018 -3.6444 -1.2831 28 1 -0.4850 0.8368 0.0734 29 1 3.4135 -2.8404 1.5709 30 1 1.9915 -2.4651 2.5735 31 1 1.6358 -4.8859 2.9754 32 1 3.0578 -5.2612 1.9728 33 1 6.6430 -3.9396 6.6974 34 1 0.8761 -0.6284 -2.0746 35 1 -0.7507 -0.9263 -3.9274 36 1 -2.0767 -3.0272 -4.0231 37 1 -1.7524 -4.7397 -2.2869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130350490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:17 Heat of formation + Delta-G solvation = -34.507514 kcal Electronic energy + Delta-G solvation = -28355.170089 eV Core-core repulsion = 23771.728903 eV Total energy + Delta-G solvation = -4583.441186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.64808 -47.66411 -44.51193 -39.85137 -38.07976 -36.48315 -35.30556 -34.21888 -32.21172 -31.49196 -31.03380 -29.34365 -27.53009 -25.52248 -25.19552 -23.24934 -22.78932 -22.22993 -21.57003 -19.37670 -18.51332 -18.31557 -17.98644 -17.95711 -17.12200 -16.79761 -16.35529 -15.75398 -15.23547 -14.93593 -14.74679 -14.60588 -14.49585 -13.98804 -13.84876 -13.75242 -13.59689 -13.40050 -12.86411 -12.69598 -12.45416 -12.30099 -12.21001 -12.14713 -12.05049 -11.73271 -11.48931 -11.32807 -11.16890 -10.86785 -10.84421 -10.52741 -10.00422 -9.46999 -9.14066 -8.98186 -8.73812 -8.01387 -7.09574 -6.53350 -4.62366 0.69529 1.68073 2.03426 2.18040 2.39798 2.79025 2.95745 3.04791 3.07212 3.40341 3.65103 3.79634 3.88177 4.24584 4.26299 4.34036 4.62022 4.82542 4.90420 5.05068 5.11486 5.19474 5.38556 5.48277 5.68032 5.74020 5.91281 6.01772 6.11830 6.28484 6.31225 6.40027 6.79690 7.04417 7.12503 7.21771 7.49175 7.85247 7.93176 8.09951 8.72505 8.80892 9.21493 9.66383 10.35733 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.003078 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.025698 B = 9095.254964 C =10426.115571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.054 3.946 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.383 5.383 10 C 0.497 3.503 11 O -0.524 6.524 12 C -0.117 4.117 13 C -0.018 4.018 14 C 0.213 3.787 15 N -0.285 5.285 16 N -0.236 5.236 17 C 0.062 3.938 18 C 0.389 3.611 19 F -0.181 7.181 20 F -0.178 7.178 21 O -0.204 6.204 22 C 0.385 3.615 23 C -0.141 4.141 24 C -0.081 4.081 25 C -0.235 4.235 26 C 0.106 3.894 27 N -0.494 5.494 28 H 0.277 0.723 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.166 0.834 34 H 0.136 0.864 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.952 -3.537 5.252 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.157 4.157 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.116 0.884 9 N -0.095 5.095 10 C 0.285 3.715 11 O -0.400 6.400 12 C -0.158 4.158 13 C -0.057 4.057 14 C 0.004 3.996 15 N -0.132 5.132 16 N -0.086 5.086 17 C -0.150 4.150 18 C 0.334 3.666 19 F -0.162 7.162 20 F -0.159 7.159 21 O -0.082 6.082 22 C 0.154 3.846 23 C -0.165 4.165 24 C -0.107 4.107 25 C -0.257 4.257 26 C -0.053 4.053 27 N -0.210 5.210 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.125 0.875 33 H 0.183 0.817 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.976 -4.307 6.799 11.331 hybrid contribution 0.903 1.536 -1.658 2.434 sum 8.879 -2.771 5.141 10.628 Atomic orbital electron populations 1.69956 1.06185 1.28922 1.42284 1.25618 0.95423 1.00290 0.94342 0.86046 0.79709 0.80812 0.79039 1.19634 1.20385 1.18923 1.19410 0.92209 0.81751 1.55976 0.88411 1.41075 1.35140 1.13074 1.20231 1.20476 0.82832 0.84669 0.83482 1.90687 1.49883 1.25416 1.74041 1.21397 1.01907 0.95813 0.96706 1.20280 0.96630 1.00428 0.88318 1.28644 0.78549 0.94118 0.98286 1.74557 1.20756 1.18109 0.99761 1.74335 0.94138 1.13336 1.26782 1.28340 1.00116 1.05885 0.80691 1.19534 0.76625 0.73630 0.96831 1.93103 1.85865 1.40303 1.96889 1.93115 1.76175 1.64759 1.81897 1.84856 1.25227 1.66384 1.31692 1.18783 0.89945 0.88974 0.86851 1.21520 1.00967 1.00126 0.93872 1.21165 0.95535 0.96588 0.97382 1.21656 1.04636 0.96908 1.02510 1.22268 0.94597 0.98020 0.90404 1.67575 1.07245 1.22175 1.23999 0.91188 0.88852 0.87784 0.85679 0.87488 0.81676 0.84615 0.86644 0.86851 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.96 11.12 55.49 0.62 -20.34 16 2 C 0.05 1.23 3.59 -17.49 -0.06 1.17 16 3 Si 0.92 17.82 29.56 -169.99 -5.03 12.80 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.37 -8.49 7.67 -14.90 -0.11 -8.61 16 8 H 0.10 2.12 7.36 -52.49 -0.39 1.73 16 9 N -0.38 -9.32 2.68 -60.71 -0.16 -9.48 16 10 C 0.50 11.18 7.58 -10.99 -0.08 11.09 16 11 O -0.52 -12.73 14.28 5.56 0.08 -12.65 16 12 C -0.12 -2.07 4.60 -27.89 -0.13 -2.20 16 13 C -0.02 -0.26 5.15 -27.88 -0.14 -0.41 16 14 C 0.21 3.19 7.73 -12.94 -0.10 3.09 16 15 N -0.28 -4.60 12.22 32.55 0.40 -4.20 16 16 N -0.24 -3.43 12.22 32.55 0.40 -3.04 16 17 C 0.06 0.79 7.91 -12.94 -0.10 0.68 16 18 C 0.39 3.29 5.86 36.01 0.21 3.50 16 19 F -0.18 -1.71 17.32 2.25 0.04 -1.67 16 20 F -0.18 -1.78 17.32 2.25 0.04 -1.74 16 21 O -0.20 -2.92 10.87 5.40 0.06 -2.86 16 22 C 0.38 9.57 6.63 -154.64 -1.02 8.54 16 23 C -0.14 -3.23 7.61 -39.22 -0.30 -3.53 16 24 C -0.08 -1.59 10.17 -39.31 -0.40 -1.99 16 25 C -0.23 -4.37 10.11 -39.40 -0.40 -4.77 16 26 C 0.11 2.18 11.18 -17.56 -0.20 1.98 16 27 N -0.49 -12.12 7.92 -12.34 -0.10 -12.22 16 28 H 0.28 6.56 8.32 -40.82 -0.34 6.22 16 29 H 0.09 1.53 7.54 -51.93 -0.39 1.14 16 30 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 31 H 0.13 1.87 8.05 -51.93 -0.42 1.45 16 32 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.17 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.14 3.17 5.55 -52.48 -0.29 2.88 16 35 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -30.78 338.03 -4.56 -35.34 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.16 Total: 6.38 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -2.84 Total: 8.57 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 1.15 Total: -49.27 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.14 Total: -15.51 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.78 -4.56 -35.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130350490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.833 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds