Wall clock time and date at job start Tue Mar 31 2020 20:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48497 * 109.47567 * 269.99992 * 3 2 1 5 5 H 1.48499 * 109.47247 * 30.00680 * 3 2 1 6 6 H 1.48501 * 109.46909 * 150.00279 * 3 2 1 7 7 C 1.38894 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99606 * 187.36265 * 7 2 1 9 9 N 1.37208 * 120.00489 * 7.35362 * 7 2 1 10 10 C 1.34769 * 120.00389 * 230.17352 * 9 7 2 11 11 O 1.21279 * 120.00073 * 184.96896 * 10 9 7 12 12 C 1.50700 * 120.00298 * 4.96749 * 10 9 7 13 13 C 1.52995 * 109.47322 * 184.99732 * 12 10 9 14 14 C 1.50708 * 109.46898 * 179.97438 * 13 12 10 15 15 N 1.30275 * 126.28017 * 90.02656 * 14 13 12 16 16 N 1.28667 * 109.38142 * 179.97438 * 15 14 13 17 17 C 1.30276 * 109.37921 * 359.97438 * 16 15 14 18 18 C 1.50700 * 126.28529 * 180.02562 * 17 16 15 19 19 F 1.39903 * 109.47189 * 119.97574 * 18 17 16 20 20 F 1.39894 * 109.47241 * 239.97998 * 18 17 16 21 21 O 1.34357 * 126.28354 * 269.71145 * 14 13 12 22 22 C 1.39428 * 119.99697 * 50.16723 * 9 7 2 23 23 C 1.39075 * 119.69657 * 5.00481 * 22 9 7 24 24 C 1.38383 * 119.09774 * 180.02562 * 23 22 9 25 25 C 1.38829 * 118.49169 * 0.02562 * 24 23 22 26 26 C 1.38146 * 119.31415 * 0.24813 * 25 24 23 27 27 N 1.31888 * 120.84781 * 359.47880 * 26 25 24 28 28 H 0.96996 * 119.99886 * 354.98616 * 1 2 3 29 29 H 1.09003 * 109.46783 * 304.99693 * 12 10 9 30 30 H 1.08993 * 109.47141 * 64.99384 * 12 10 9 31 31 H 1.09003 * 109.47160 * 299.99730 * 13 12 10 32 32 H 1.09003 * 109.47299 * 59.99969 * 13 12 10 33 33 H 1.09002 * 109.46447 * 359.97438 * 18 17 16 34 34 H 1.08003 * 120.44802 * 0.03991 * 23 22 9 35 35 H 1.08003 * 120.75165 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.34320 * 179.97438 * 25 24 23 37 37 H 1.07997 * 119.57851 * 179.74929 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0085 -1.2029 -0.0005 8 1 3.0819 -1.2068 0.1193 9 7 1.3310 -2.3862 -0.1531 10 6 1.5435 -3.4005 0.7085 11 8 1.0140 -4.4755 0.5222 12 6 2.4393 -3.1989 1.9035 13 6 2.6100 -4.5274 2.6429 14 6 3.5063 -4.3258 3.8376 15 7 3.1260 -4.0015 5.0406 16 7 4.1568 -3.9161 5.8058 17 6 5.2298 -4.1836 5.1171 18 6 6.6441 -4.1941 5.6375 19 9 7.1953 -5.4682 5.4642 20 9 7.4069 -3.2562 4.9336 21 8 4.8436 -4.4533 3.8587 22 6 0.4225 -2.5393 -1.1996 23 6 0.2843 -1.5291 -2.1454 24 6 -0.6215 -1.6938 -3.1786 25 6 -1.3611 -2.8676 -3.2301 26 6 -1.1764 -3.8268 -2.2532 27 7 -0.3018 -3.6444 -1.2831 28 1 -0.4850 0.8368 0.0734 29 1 3.4135 -2.8404 1.5709 30 1 1.9915 -2.4651 2.5735 31 1 1.6358 -4.8859 2.9754 32 1 3.0578 -5.2612 1.9728 33 1 6.6430 -3.9396 6.6974 34 1 0.8761 -0.6284 -2.0746 35 1 -0.7507 -0.9263 -3.9274 36 1 -2.0767 -3.0272 -4.0231 37 1 -1.7524 -4.7397 -2.2869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130350490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:16 Heat of formation + Delta-G solvation = -56.097123 kcal Electronic energy + Delta-G solvation = -28356.106285 eV Core-core repulsion = 23771.728903 eV Total energy + Delta-G solvation = -4584.377382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.37574 -48.39665 -45.62728 -41.53870 -39.73357 -37.61306 -37.00846 -35.52657 -33.95000 -32.82753 -32.53553 -30.90886 -28.58356 -27.19646 -26.57506 -24.44749 -24.06868 -23.74349 -23.00208 -21.07106 -19.74500 -19.42185 -19.11511 -18.67694 -18.32308 -17.95442 -17.66133 -17.42431 -16.83806 -16.51661 -16.23986 -16.14596 -15.31580 -15.24447 -15.19238 -15.06147 -14.72232 -14.47733 -14.42530 -13.96252 -13.85520 -13.71761 -13.57789 -13.37004 -13.29399 -13.09164 -13.04516 -12.83753 -12.49544 -12.40058 -12.18953 -12.06834 -11.24651 -11.09825 -10.84481 -10.68952 -10.41408 -9.70940 -8.82650 -8.26494 -6.42687 -0.37787 0.54050 0.70078 0.76606 0.89495 1.41724 1.45913 1.56196 1.83651 1.98899 2.22180 2.56655 2.76844 2.88639 2.98171 3.42472 3.45387 3.54125 3.72511 3.79380 3.83884 3.91924 4.03597 4.11744 4.22821 4.31959 4.51856 4.57022 4.66784 4.76268 4.81247 4.90319 5.17951 5.34797 5.43261 5.60481 5.88442 6.12919 6.37202 6.81225 6.96342 7.13016 7.49047 7.95034 8.62199 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.003078 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.025698 B = 9095.254964 C =10426.115571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.020 3.980 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.483 3.517 11 O -0.551 6.551 12 C -0.103 4.103 13 C -0.005 4.005 14 C 0.211 3.789 15 N -0.307 5.307 16 N -0.254 5.254 17 C 0.074 3.926 18 C 0.394 3.606 19 F -0.184 7.184 20 F -0.185 7.185 21 O -0.212 6.212 22 C 0.349 3.651 23 C -0.161 4.161 24 C -0.079 4.079 25 C -0.218 4.218 26 C 0.089 3.911 27 N -0.531 5.531 28 H 0.276 0.724 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.218 0.782 34 H 0.124 0.876 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.814 -3.093 4.898 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.502 4.502 8 H 0.126 0.874 9 N -0.112 5.112 10 C 0.273 3.727 11 O -0.429 6.429 12 C -0.143 4.143 13 C -0.044 4.044 14 C 0.001 3.999 15 N -0.154 5.154 16 N -0.102 5.102 17 C -0.139 4.139 18 C 0.339 3.661 19 F -0.165 7.165 20 F -0.166 7.166 21 O -0.090 6.090 22 C 0.120 3.880 23 C -0.185 4.185 24 C -0.105 4.105 25 C -0.239 4.239 26 C -0.069 4.069 27 N -0.247 5.247 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.234 0.766 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.177 0.823 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.851 -3.866 6.449 11.614 hybrid contribution 0.596 1.325 -1.629 2.183 sum 9.447 -2.542 4.820 10.906 Atomic orbital electron populations 1.70089 1.07774 1.29407 1.43783 1.26332 0.95853 1.02972 0.93465 0.85095 0.78648 0.76726 0.79110 1.19070 1.20884 1.17932 1.19743 0.92730 0.81930 1.55788 0.87450 1.41399 1.35397 1.13667 1.20764 1.21206 0.83088 0.84114 0.84243 1.90641 1.51176 1.26226 1.74907 1.21252 1.01173 0.97139 0.94774 1.20074 0.96839 0.99108 0.88350 1.28402 0.78914 0.94651 0.97908 1.74512 1.21888 1.18651 1.00369 1.74275 0.94342 1.14657 1.26895 1.29356 1.01525 1.03294 0.79720 1.20244 0.74120 0.73173 0.98519 1.93098 1.85617 1.40816 1.97002 1.93103 1.76045 1.65062 1.82426 1.84870 1.24826 1.66546 1.32721 1.19147 0.90989 0.89919 0.87923 1.21553 1.02356 0.99508 0.95056 1.21625 0.94165 0.97844 0.96907 1.22096 1.04013 0.95354 1.02438 1.22913 0.94100 0.99738 0.90129 1.67546 1.08552 1.22713 1.25932 0.91445 0.87692 0.88581 0.86021 0.86389 0.76551 0.85840 0.83217 0.82285 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.59 11.12 21.65 0.24 -44.34 16 2 C 0.02 0.95 3.59 84.91 0.31 1.25 16 3 Si 0.98 36.42 29.56 68.60 2.03 38.45 16 4 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 7 C -0.38 -17.71 7.67 84.01 0.64 -17.06 16 8 H 0.11 4.68 7.36 -2.91 -0.02 4.66 16 9 N -0.40 -20.02 2.68 -464.37 -1.24 -21.26 16 10 C 0.48 22.48 7.58 87.66 0.66 23.15 16 11 O -0.55 -27.72 14.28 -3.03 -0.04 -27.76 16 12 C -0.10 -3.70 4.60 29.85 0.14 -3.56 16 13 C 0.00 -0.15 5.15 29.85 0.15 0.01 16 14 C 0.21 6.28 7.73 88.34 0.68 6.96 16 15 N -0.31 -9.87 12.22 -165.50 -2.02 -11.89 16 16 N -0.25 -7.12 12.22 -165.50 -2.02 -9.14 16 17 C 0.07 1.76 7.91 88.34 0.70 2.46 16 18 C 0.39 5.65 5.86 71.24 0.42 6.07 16 19 F -0.18 -3.07 17.32 44.97 0.78 -2.29 16 20 F -0.19 -3.29 17.32 44.97 0.78 -2.51 16 21 O -0.21 -5.88 10.87 -3.59 -0.04 -5.91 16 22 C 0.35 17.78 6.63 132.91 0.88 18.66 16 23 C -0.16 -7.42 7.61 22.51 0.17 -7.25 16 24 C -0.08 -2.99 10.17 22.45 0.23 -2.76 16 25 C -0.22 -7.51 10.11 22.39 0.23 -7.28 16 26 C 0.09 3.58 11.18 84.66 0.95 4.52 16 27 N -0.53 -26.45 7.92 -192.95 -1.53 -27.98 16 28 H 0.28 13.31 8.32 -92.71 -0.77 12.53 16 29 H 0.10 3.47 7.54 -2.39 -0.02 3.46 16 30 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.12 3.75 8.05 -2.39 -0.02 3.73 16 32 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.22 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 5.88 5.55 -2.91 -0.02 5.86 16 35 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 36 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.17 5.44 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -68.96 338.03 4.23 -64.73 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 1.15 Total: 24.75 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 6.16 Total: 25.16 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -6.58 Total: -114.61 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.08 Total: -33.68 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.56 Total: -4.80 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -68.96 4.23 -64.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130350490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.631 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds