Wall clock time and date at job start Tue Mar 31 2020 20:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48496 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46982 * 300.00478 * 3 2 1 6 6 H 1.48497 * 109.46803 * 60.00037 * 3 2 1 7 7 C 1.40027 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.41336 * 120.00311 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.78682 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.13301 * 180.02562 * 10 9 7 12 12 C 1.38686 * 118.67172 * 359.72809 * 11 10 9 13 13 C 1.39658 * 119.49423 * 0.53149 * 12 11 10 14 14 N 1.39177 * 119.57895 * 179.72886 * 13 12 11 15 15 C 1.34770 * 119.99911 * 185.33060 * 14 13 12 16 16 O 1.21561 * 120.00435 * 354.83558 * 15 14 13 17 17 C 1.47722 * 120.00002 * 174.83526 * 15 14 13 18 18 C 1.38486 * 119.77765 * 359.97438 * 17 15 14 19 19 C 1.40373 * 119.52598 * 179.73004 * 18 17 15 20 20 N 1.33836 * 120.89250 * 179.97438 * 19 18 17 21 21 C 1.31266 * 119.74503 * 179.97438 * 20 19 18 22 22 C 1.39743 * 120.69546 * 0.04278 * 21 20 19 23 23 N 1.31333 * 120.71922 * 359.97366 * 22 21 20 24 24 C 1.33850 * 119.76179 * 0.02562 * 23 22 21 25 25 C 1.40533 * 120.83287 * 179.97438 * 24 23 22 26 26 C 1.36065 * 120.07284 * 179.97438 * 25 24 23 27 27 F 1.35105 * 119.61542 * 180.02562 * 26 25 24 28 28 N 1.31953 * 120.84243 * 359.45726 * 13 12 11 29 29 H 0.97001 * 119.99688 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.43748 * 359.97438 * 10 9 7 31 31 H 1.08005 * 120.66274 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.25646 * 180.28590 * 12 11 10 33 33 H 0.97000 * 119.99980 * 5.33546 * 14 13 12 34 34 H 1.08006 * 120.23469 * 359.70061 * 18 17 15 35 35 H 1.08001 * 119.65237 * 179.97438 * 21 20 19 36 36 H 1.07998 * 119.64398 * 179.97438 * 22 21 20 37 37 H 1.07995 * 119.96247 * 0.03066 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0084 -3.6518 -0.0016 11 6 1.3032 -4.8416 -0.0022 12 6 -0.0828 -4.7937 0.0042 13 6 -0.7280 -3.5550 -0.0004 14 7 -2.1189 -3.5049 0.0002 15 6 -2.7504 -2.3197 -0.1125 16 8 -2.1088 -1.2872 -0.1203 17 6 -4.2226 -2.2751 -0.2268 18 6 -4.9491 -3.4541 -0.2180 19 6 -6.3482 -3.4053 -0.3211 20 7 -7.0771 -4.5277 -0.3159 21 6 -8.3842 -4.4558 -0.4131 22 6 -9.0244 -3.2185 -0.5230 23 7 -8.3314 -2.1029 -0.5307 24 6 -6.9973 -2.1488 -0.4329 25 6 -6.2336 -0.9691 -0.4394 26 6 -4.8782 -1.0337 -0.3387 27 9 -4.1531 0.1063 -0.3453 28 7 -0.0357 -2.4317 0.0001 29 1 -0.4850 0.8401 0.0004 30 1 3.0883 -3.6561 -0.0029 31 1 1.8216 -5.7892 -0.0034 32 1 -0.6590 -5.7072 0.0086 33 1 -2.6336 -4.3229 0.0819 34 1 -4.4427 -4.4043 -0.1329 35 1 -8.9709 -5.3625 -0.4092 36 1 -10.1007 -3.1792 -0.6024 37 1 -6.7231 -0.0102 -0.5236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132801155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:22 Heat of formation + Delta-G solvation = 62.238714 kcal Electronic energy + Delta-G solvation = -27766.390352 eV Core-core repulsion = 23617.913621 eV Total energy + Delta-G solvation = -4148.476730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.85338 -41.65928 -39.56606 -37.86371 -36.71465 -35.14035 -34.26263 -33.10929 -31.35179 -30.61626 -30.32617 -28.95555 -26.08294 -25.51612 -24.62554 -22.86650 -22.46366 -21.36755 -20.23607 -18.97332 -18.60660 -17.84548 -17.34208 -16.49447 -16.10495 -15.92169 -15.78057 -15.32313 -14.98701 -14.70694 -14.61286 -14.46951 -14.24288 -13.80627 -13.57313 -13.35006 -12.93160 -12.77975 -12.27909 -12.17413 -12.01480 -11.99992 -11.90078 -11.56010 -11.17624 -10.95788 -10.66245 -10.50553 -9.94603 -9.79666 -9.51294 -9.24945 -9.13936 -9.04695 -8.81731 -8.01352 -7.30382 -7.04464 -6.17138 -4.42468 -0.27772 0.09955 1.49615 2.10302 2.78930 3.06691 3.18213 3.21543 3.24994 3.41419 3.52624 3.57573 3.71923 3.87674 3.97549 4.05849 4.08680 4.40530 4.53103 4.81634 4.88690 4.90671 5.03068 5.26648 5.40570 5.46701 5.70542 5.85476 5.99651 6.08047 6.33045 6.43167 6.58465 6.76734 6.81115 6.87949 7.20282 7.34376 7.48093 7.55312 7.77343 7.95092 8.13617 8.38099 8.67194 8.99241 9.06088 10.18364 10.45828 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.003435 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.969054 B = 8149.931766 C = 9900.615427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.656 5.656 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.422 4.422 8 H 0.084 0.916 9 C 0.270 3.730 10 C -0.302 4.302 11 C -0.036 4.036 12 C -0.355 4.355 13 C 0.371 3.629 14 N -0.657 5.657 15 C 0.508 3.492 16 O -0.377 6.377 17 C -0.125 4.125 18 C -0.024 4.024 19 C 0.060 3.940 20 N -0.412 5.412 21 C 0.068 3.932 22 C 0.088 3.912 23 N -0.429 5.429 24 C 0.114 3.886 25 C -0.141 4.141 26 C 0.180 3.820 27 F -0.099 7.099 28 N -0.474 5.474 29 H 0.274 0.726 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.399 0.601 34 H 0.154 0.846 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 -5.821 -0.723 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.275 5.275 2 C -0.172 4.172 3 Si 0.721 3.279 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.452 4.452 8 H 0.102 0.898 9 C 0.145 3.855 10 C -0.325 4.325 11 C -0.060 4.060 12 C -0.381 4.381 13 C 0.133 3.867 14 N -0.305 5.305 15 C 0.288 3.712 16 O -0.240 6.240 17 C -0.132 4.132 18 C -0.044 4.044 19 C -0.064 4.064 20 N -0.126 5.126 21 C -0.108 4.108 22 C -0.088 4.088 23 N -0.143 5.143 24 C -0.009 4.009 25 C -0.161 4.161 26 C 0.158 3.842 27 F -0.077 7.077 28 N -0.193 5.193 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.234 0.766 34 H 0.171 0.829 35 H 0.194 0.806 36 H 0.194 0.806 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.741 -3.838 -0.738 18.166 hybrid contribution 0.388 -0.554 0.019 0.676 sum -17.352 -4.391 -0.719 17.914 Atomic orbital electron populations 1.70286 1.05832 1.27609 1.23759 1.26182 0.95139 1.00672 0.95216 0.86439 0.80832 0.82145 0.78448 1.18611 1.20010 1.20016 1.19635 0.94137 0.89322 1.42130 0.89827 1.18376 0.87012 0.92046 0.88051 1.21637 0.98625 0.93486 1.18767 1.20564 0.93122 0.96591 0.95723 1.20463 0.94832 0.94796 1.27969 1.18507 0.82701 0.91143 0.94376 1.43198 1.05492 1.08663 1.73162 1.18110 0.85284 0.85881 0.81925 1.91320 1.63879 1.30334 1.38424 1.20757 0.96425 0.92328 1.03672 1.21217 0.90762 0.98255 0.94167 1.19402 0.94878 0.89688 1.02442 1.68666 1.07239 1.29159 1.07514 1.24077 0.91248 0.99527 0.95951 1.24160 1.01982 0.88751 0.93924 1.68720 1.05593 1.30741 1.09235 1.19151 0.90685 0.92984 0.98117 1.20518 0.91250 0.99084 1.05296 1.17198 0.88485 0.82078 0.96446 1.91694 1.77224 1.46502 1.92242 1.68666 1.07222 1.23194 1.20256 0.91437 0.88462 0.88496 0.88963 0.76615 0.82851 0.80557 0.80571 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.17 8.99 55.55 0.50 -17.67 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 3 Si 0.90 19.30 29.56 -169.99 -5.02 14.27 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.42 -11.53 9.14 -37.73 -0.34 -11.87 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.27 7.53 6.55 -85.00 -0.56 6.97 16 10 C -0.30 -7.52 9.83 -38.66 -0.38 -7.90 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.35 -7.82 9.95 -38.89 -0.39 -8.21 16 13 C 0.37 8.93 7.42 -155.03 -1.15 7.78 16 14 N -0.66 -12.80 5.32 -12.30 -0.07 -12.87 16 15 C 0.51 10.33 7.72 -12.39 -0.10 10.24 16 16 O -0.38 -9.46 11.04 5.31 0.06 -9.40 16 17 C -0.13 -1.98 5.87 -104.95 -0.62 -2.60 16 18 C -0.02 -0.31 9.50 -38.69 -0.37 -0.67 16 19 C 0.06 0.75 6.58 -84.80 -0.56 0.19 16 20 N -0.41 -4.51 10.46 -10.81 -0.11 -4.62 16 21 C 0.07 0.50 11.21 -17.23 -0.19 0.31 16 22 C 0.09 0.64 11.21 -17.20 -0.19 0.45 16 23 N -0.43 -4.72 10.46 -10.75 -0.11 -4.83 16 24 C 0.11 1.44 6.59 -84.73 -0.56 0.88 16 25 C -0.14 -1.82 9.91 -39.50 -0.39 -2.21 16 26 C 0.18 2.79 7.21 -39.38 -0.28 2.50 16 27 F -0.10 -1.79 15.46 2.25 0.03 -1.75 16 28 N -0.47 -13.22 5.74 -10.27 -0.06 -13.27 16 29 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 30 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.40 5.92 6.70 -40.82 -0.27 5.65 16 34 H 0.15 1.64 6.37 -52.48 -0.33 1.31 16 35 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -34.49 330.26 -9.07 -43.56 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -2.69 Total: 5.55 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -6.57 Total: -3.94 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.15 Total: -53.26 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.06 Total: -9.40 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.49 -9.07 -43.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132801155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.797 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds