Wall clock time and date at job start Tue Mar 31 2020 20:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48496 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46982 * 300.00478 * 3 2 1 6 6 H 1.48497 * 109.46803 * 60.00037 * 3 2 1 7 7 C 1.40027 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.41336 * 120.00311 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.78682 * 179.97438 * 9 7 2 11 11 C 1.38311 * 119.13301 * 180.02562 * 10 9 7 12 12 C 1.38686 * 118.67172 * 359.72809 * 11 10 9 13 13 C 1.39658 * 119.49423 * 0.53149 * 12 11 10 14 14 N 1.39177 * 119.57895 * 179.72886 * 13 12 11 15 15 C 1.34770 * 119.99911 * 185.33060 * 14 13 12 16 16 O 1.21561 * 120.00435 * 354.83558 * 15 14 13 17 17 C 1.47722 * 120.00002 * 174.83526 * 15 14 13 18 18 C 1.38486 * 119.77765 * 359.97438 * 17 15 14 19 19 C 1.40373 * 119.52598 * 179.73004 * 18 17 15 20 20 N 1.33836 * 120.89250 * 179.97438 * 19 18 17 21 21 C 1.31266 * 119.74503 * 179.97438 * 20 19 18 22 22 C 1.39743 * 120.69546 * 0.04278 * 21 20 19 23 23 N 1.31333 * 120.71922 * 359.97366 * 22 21 20 24 24 C 1.33850 * 119.76179 * 0.02562 * 23 22 21 25 25 C 1.40533 * 120.83287 * 179.97438 * 24 23 22 26 26 C 1.36065 * 120.07284 * 179.97438 * 25 24 23 27 27 F 1.35105 * 119.61542 * 180.02562 * 26 25 24 28 28 N 1.31953 * 120.84243 * 359.45726 * 13 12 11 29 29 H 0.97001 * 119.99688 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.43748 * 359.97438 * 10 9 7 31 31 H 1.08005 * 120.66274 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.25646 * 180.28590 * 12 11 10 33 33 H 0.97000 * 119.99980 * 5.33546 * 14 13 12 34 34 H 1.08006 * 120.23469 * 359.70061 * 18 17 15 35 35 H 1.08001 * 119.65237 * 179.97438 * 21 20 19 36 36 H 1.07998 * 119.64398 * 179.97438 * 22 21 20 37 37 H 1.07995 * 119.96247 * 0.03066 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0084 -3.6518 -0.0016 11 6 1.3032 -4.8416 -0.0022 12 6 -0.0828 -4.7937 0.0042 13 6 -0.7280 -3.5550 -0.0004 14 7 -2.1189 -3.5049 0.0002 15 6 -2.7504 -2.3197 -0.1125 16 8 -2.1088 -1.2872 -0.1203 17 6 -4.2226 -2.2751 -0.2268 18 6 -4.9491 -3.4541 -0.2180 19 6 -6.3482 -3.4053 -0.3211 20 7 -7.0771 -4.5277 -0.3159 21 6 -8.3842 -4.4558 -0.4131 22 6 -9.0244 -3.2185 -0.5230 23 7 -8.3314 -2.1029 -0.5307 24 6 -6.9973 -2.1488 -0.4329 25 6 -6.2336 -0.9691 -0.4394 26 6 -4.8782 -1.0337 -0.3387 27 9 -4.1531 0.1063 -0.3453 28 7 -0.0357 -2.4317 0.0001 29 1 -0.4850 0.8401 0.0004 30 1 3.0883 -3.6561 -0.0029 31 1 1.8216 -5.7892 -0.0034 32 1 -0.6590 -5.7072 0.0086 33 1 -2.6336 -4.3229 0.0819 34 1 -4.4427 -4.4043 -0.1329 35 1 -8.9709 -5.3625 -0.4092 36 1 -10.1007 -3.1792 -0.6024 37 1 -6.7231 -0.0102 -0.5236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132801155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:21 Heat of formation + Delta-G solvation = 38.995555 kcal Electronic energy + Delta-G solvation = -27767.398251 eV Core-core repulsion = 23617.913621 eV Total energy + Delta-G solvation = -4149.484629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08397 -42.51479 -41.14136 -39.50577 -37.90068 -36.10349 -35.89986 -34.93344 -32.53821 -32.16760 -31.53295 -30.69062 -27.60551 -26.84786 -25.59921 -24.04326 -23.83201 -23.17054 -21.73807 -20.19659 -19.89903 -19.18855 -18.57425 -17.81882 -17.63512 -17.07917 -16.87567 -16.47492 -16.27827 -16.16016 -15.92226 -15.84228 -15.70183 -15.56723 -14.89195 -14.59987 -14.41671 -14.06037 -13.85557 -13.76142 -13.18950 -12.96178 -12.87705 -12.78066 -12.73639 -12.60158 -12.55550 -12.33186 -11.76005 -11.58921 -10.93063 -10.90922 -10.23472 -10.11700 -9.92367 -9.80014 -9.16654 -8.88327 -8.07037 -6.43081 -1.17621 -0.80305 0.60365 0.86781 1.15533 1.32085 1.38873 1.51464 1.53921 2.01151 2.25377 2.31394 2.66364 2.81513 2.85666 2.99677 3.03760 3.11956 3.44348 3.73782 3.85624 4.01897 4.03811 4.23519 4.33383 4.39488 4.49637 4.54459 4.62555 4.75941 4.87359 4.95287 5.01911 5.06997 5.25398 5.38941 5.66222 5.78166 5.91356 6.11061 6.12986 6.33213 6.59223 6.61528 6.79449 7.04885 7.45947 8.30424 8.54889 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.003435 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.969054 B = 8149.931766 C = 9900.615427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.010 3.990 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.463 4.463 8 H 0.087 0.913 9 C 0.236 3.764 10 C -0.325 4.325 11 C -0.034 4.034 12 C -0.341 4.341 13 C 0.348 3.652 14 N -0.645 5.645 15 C 0.503 3.497 16 O -0.433 6.433 17 C -0.148 4.148 18 C -0.002 4.002 19 C 0.045 3.955 20 N -0.434 5.434 21 C 0.090 3.910 22 C 0.111 3.889 23 N -0.455 5.455 24 C 0.104 3.896 25 C -0.127 4.127 26 C 0.149 3.851 27 F -0.126 7.126 28 N -0.511 5.511 29 H 0.270 0.730 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.420 0.580 34 H 0.173 0.827 35 H 0.229 0.771 36 H 0.229 0.771 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.211 -8.737 -0.859 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.215 4.215 3 Si 0.796 3.204 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.494 4.494 8 H 0.105 0.895 9 C 0.111 3.889 10 C -0.348 4.348 11 C -0.058 4.058 12 C -0.366 4.366 13 C 0.110 3.890 14 N -0.295 5.295 15 C 0.287 3.713 16 O -0.299 6.299 17 C -0.154 4.154 18 C -0.022 4.022 19 C -0.076 4.076 20 N -0.148 5.148 21 C -0.087 4.087 22 C -0.065 4.065 23 N -0.169 5.169 24 C -0.018 4.018 25 C -0.147 4.147 26 C 0.127 3.873 27 F -0.105 7.105 28 N -0.230 5.230 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.259 0.741 34 H 0.190 0.810 35 H 0.245 0.755 36 H 0.245 0.755 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -21.100 -6.801 -0.870 22.186 hybrid contribution 0.985 -0.030 0.045 0.986 sum -20.115 -6.831 -0.825 21.259 Atomic orbital electron populations 1.70502 1.07352 1.27995 1.25312 1.27050 0.95971 1.04094 0.94375 0.85271 0.79656 0.77152 0.78322 1.17513 1.19746 1.19654 1.19933 0.94483 0.90363 1.44577 0.89470 1.18874 0.87775 0.93525 0.88753 1.21825 0.99308 0.93755 1.19908 1.21055 0.93472 0.97416 0.93822 1.20969 0.95247 0.95542 1.24870 1.19032 0.84461 0.91345 0.94158 1.43126 1.04111 1.09738 1.72565 1.18758 0.87120 0.85213 0.80245 1.91303 1.65677 1.32037 1.40918 1.20226 0.93555 0.93755 1.07843 1.21325 0.91360 0.97624 0.91857 1.19375 0.94701 0.90418 1.03143 1.68741 1.08964 1.28145 1.08938 1.25061 0.90226 1.01567 0.91837 1.25155 1.04094 0.87639 0.89660 1.68802 1.04631 1.32708 1.10760 1.19200 0.91720 0.92645 0.98281 1.20602 0.90098 1.00240 1.03745 1.17424 0.89364 0.81323 0.99153 1.91616 1.78065 1.47837 1.92947 1.68629 1.07611 1.25501 1.21305 0.91969 0.87581 0.84232 0.84678 0.74094 0.80968 0.75488 0.75484 0.81371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.21 8.99 21.84 0.20 -41.02 16 2 C 0.01 0.58 5.50 85.29 0.47 1.05 16 3 Si 0.97 41.96 29.56 68.60 2.03 43.99 16 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.46 -26.77 9.14 23.47 0.21 -26.55 16 8 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 9 C 0.24 13.83 6.55 40.21 0.26 14.09 16 10 C -0.33 -16.48 9.83 22.87 0.22 -16.25 16 11 C -0.03 -1.45 10.15 22.39 0.23 -1.22 16 12 C -0.34 -14.49 9.95 22.72 0.23 -14.26 16 13 C 0.35 17.09 7.42 133.26 0.99 18.08 16 14 N -0.65 -25.68 5.32 -311.10 -1.66 -27.34 16 15 C 0.50 21.80 7.72 86.75 0.67 22.47 16 16 O -0.43 -23.61 11.04 -3.91 -0.04 -23.65 16 17 C -0.15 -4.91 5.87 -20.08 -0.12 -5.02 16 18 C 0.00 -0.04 9.50 22.85 0.22 0.17 16 19 C 0.05 1.05 6.58 40.26 0.27 1.31 16 20 N -0.43 -7.83 10.46 -188.11 -1.97 -9.79 16 21 C 0.09 0.81 11.21 85.14 0.95 1.77 16 22 C 0.11 1.02 11.21 85.13 0.95 1.97 16 23 N -0.45 -8.54 10.46 -187.93 -1.97 -10.50 16 24 C 0.10 2.46 6.59 40.29 0.27 2.72 16 25 C -0.13 -3.35 9.91 22.32 0.22 -3.13 16 26 C 0.15 4.97 7.21 22.40 0.16 5.13 16 27 F -0.13 -5.09 15.46 44.97 0.70 -4.40 16 28 N -0.51 -29.94 5.74 -186.41 -1.07 -31.01 16 29 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 30 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 31 H 0.14 4.78 8.06 -2.91 -0.02 4.75 16 32 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.42 12.14 6.70 -92.71 -0.62 11.52 16 34 H 0.17 3.43 6.37 -2.91 -0.02 3.41 16 35 H 0.23 -0.32 8.06 -2.91 -0.02 -0.34 16 36 H 0.23 -0.31 8.06 -2.91 -0.02 -0.34 16 37 H 0.17 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -83.86 330.26 2.97 -80.88 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.55 Total: 20.52 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.21 Total: 2.32 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -6.46 Total: -119.66 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.04 Total: -23.65 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.70 Total: -4.40 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -83.86 2.97 -80.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132801155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.879 kcal (2) G-P(sol) polarization free energy of solvation -83.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds