Wall clock time and date at job start Tue Mar 31 2020 20:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45196 * 109.47217 * 2 1 4 4 C 1.34230 * 117.00230 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00140 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99951 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.46995 * 180.02562 * 6 4 3 8 8 C 1.46901 * 110.99966 * 66.04446 * 7 6 4 9 9 C 1.50706 * 109.47096 * 193.95173 * 8 7 6 10 10 H 1.07999 * 119.99744 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99478 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00793 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99443 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47079 * 60.00276 * 13 11 9 15 15 H 1.48499 * 109.46956 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47190 * 300.00051 * 13 11 9 17 17 C 1.41077 * 110.99938 * 189.99763 * 7 6 4 18 18 C 1.36237 * 127.19688 * 296.07045 * 17 7 6 19 19 N 1.33854 * 110.98477 * 179.97438 * 18 17 7 20 20 C 1.31309 * 111.97554 * 0.02562 * 19 18 17 21 21 N 1.37815 * 135.90755 * 179.97438 * 20 19 18 22 22 H 0.96996 * 120.33379 * 0.02562 * 21 20 19 23 23 C 1.34141 * 119.32786 * 179.97438 * 21 20 19 24 24 N 1.30855 * 123.26751 * 0.02562 * 23 21 20 25 25 C 1.33126 * 122.73734 * 359.97438 * 24 23 21 26 26 Cl 1.73597 * 120.50523 * 180.02562 * 25 24 23 27 27 C 1.38715 * 118.99270 * 0.02562 * 25 24 23 28 28 H 1.08997 * 109.47662 * 300.00300 * 1 2 3 29 29 H 1.08998 * 109.47059 * 60.00651 * 1 2 3 30 30 H 1.09000 * 109.46925 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47662 * 239.99699 * 2 1 3 32 32 H 1.09008 * 109.47030 * 119.99403 * 2 1 3 33 33 H 1.08999 * 109.47223 * 60.00238 * 6 4 3 34 34 H 1.09003 * 109.47256 * 299.99800 * 6 4 3 35 35 H 1.08996 * 109.47157 * 313.95486 * 8 7 6 36 36 H 1.09008 * 109.46681 * 73.95655 * 8 7 6 37 37 H 0.96996 * 120.00381 * 179.97438 * 12 11 9 38 38 H 1.07997 * 124.50903 * 0.25079 * 18 17 7 39 39 H 1.07998 * 118.36448 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9374 0.0000 7 7 5.3876 2.8606 0.0001 8 6 5.8843 2.2764 -1.2529 9 6 7.3338 1.8973 -1.0905 10 1 7.8357 2.0723 -0.1504 11 6 8.0191 1.3269 -2.1423 12 7 7.4081 1.1142 -3.2872 13 14 9.8156 0.8563 -1.9407 14 1 9.9470 -0.1380 -0.8456 15 1 10.3180 0.2670 -3.2078 16 1 10.6101 2.0662 -1.6089 17 6 5.9603 4.1295 0.2283 18 6 5.8678 5.2303 -0.5690 19 7 6.5361 6.2626 -0.0405 20 6 7.1037 5.9478 1.1010 21 7 7.8810 6.6006 2.0332 22 1 8.1243 7.5305 1.9033 23 6 8.2968 5.9372 3.1224 24 7 8.0025 4.6836 3.3553 25 6 7.2598 3.9526 2.5269 26 17 6.9042 2.2935 2.8937 27 6 6.7743 4.5368 1.3662 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5843 3.4701 0.8895 34 1 3.5851 3.4691 -0.8905 35 1 5.3013 1.3880 -1.4958 36 1 5.7874 3.0058 -2.0572 37 1 7.8903 0.7133 -4.0272 38 1 5.3236 5.2667 -1.5012 39 1 8.9048 6.4640 3.8430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157150580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:30 Heat of formation + Delta-G solvation = 25.752791 kcal Electronic energy + Delta-G solvation = -27184.549725 eV Core-core repulsion = 23155.518302 eV Total energy + Delta-G solvation = -4029.031423 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45034 -39.97566 -38.63454 -36.70484 -36.47690 -35.29801 -34.40284 -32.43170 -31.60516 -29.98333 -28.57996 -27.82847 -25.30449 -24.61495 -23.03584 -22.86962 -22.08162 -20.73160 -19.74206 -18.26818 -17.67728 -17.11325 -16.83492 -16.25666 -15.85927 -15.81229 -15.56757 -15.26865 -14.62775 -14.31350 -14.05543 -13.60940 -13.10041 -13.02628 -12.80752 -12.74823 -12.59745 -12.21386 -12.11571 -11.95979 -11.68834 -11.39189 -11.07208 -11.01221 -10.67083 -10.60666 -10.44633 -10.31358 -10.16646 -9.93822 -9.64819 -9.45458 -9.09082 -8.30371 -8.25373 -7.45398 -7.32042 -5.89379 -3.86189 0.14191 1.54805 1.94793 2.28252 2.83860 2.96032 3.41097 3.43949 3.48230 3.48736 3.68709 3.93774 4.37993 4.54965 4.58353 4.90993 5.03967 5.05076 5.11385 5.21105 5.41447 5.42086 5.48047 5.62285 5.70774 5.76686 5.82159 5.85708 6.00339 6.31598 6.55501 6.68274 6.85969 7.00109 7.25085 7.42741 7.54455 7.85300 8.17165 8.20596 8.31762 8.41892 8.60358 9.17541 9.74421 11.22358 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008167 B = 0.005410 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.640332 B = 5174.123172 C = 6880.603356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.454 3.546 5 O -0.463 6.463 6 C 0.074 3.926 7 N -0.464 5.464 8 C 0.196 3.804 9 C -0.484 4.484 10 H 0.060 0.940 11 C 0.056 3.944 12 N -0.901 5.901 13 Si 0.891 3.109 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.280 1.280 17 C 0.069 3.931 18 C 0.023 3.977 19 N -0.504 5.504 20 C 0.258 3.742 21 N -0.538 5.538 22 H 0.426 0.574 23 C 0.373 3.627 24 N -0.545 5.545 25 C 0.286 3.714 26 Cl 0.020 6.980 27 C -0.176 4.176 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.051 0.949 36 H -0.006 1.006 37 H 0.259 0.741 38 H 0.161 0.839 39 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 9.482 13.092 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.294 3.706 5 O -0.346 6.346 6 C -0.054 4.054 7 N -0.187 5.187 8 C 0.073 3.927 9 C -0.523 4.523 10 H 0.078 0.922 11 C -0.145 4.145 12 N -0.542 5.542 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.214 1.214 16 H -0.206 1.206 17 C -0.031 4.031 18 C -0.118 4.118 19 N -0.224 5.224 20 C 0.003 3.997 21 N -0.146 5.146 22 H 0.264 0.736 23 C 0.089 3.911 24 N -0.268 5.268 25 C 0.131 3.869 26 Cl 0.050 6.950 27 C -0.189 4.189 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.012 0.988 37 H 0.069 0.931 38 H 0.178 0.822 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.831 8.953 13.405 17.142 hybrid contribution 0.732 -0.225 -1.077 1.322 sum -5.098 8.728 12.328 15.942 Atomic orbital electron populations 1.21779 0.93157 1.02541 1.03206 1.22900 0.94764 0.80946 1.02577 1.86457 1.25407 1.31807 1.85184 1.23619 0.80028 0.93159 0.73769 1.90749 1.59535 1.42442 1.41890 1.21466 0.90636 0.90041 1.03274 1.59371 1.00700 1.17097 1.41523 1.20034 0.96835 0.94291 0.81547 1.20936 0.94625 1.38678 0.98044 0.92178 1.24876 0.98054 0.96262 0.95271 1.69928 1.36502 1.44922 1.02832 0.86661 0.85459 0.78710 0.77217 1.20143 1.21395 1.20639 1.19456 1.00340 0.90132 0.93170 1.22730 1.00348 0.89109 0.99582 1.69060 1.14600 1.32312 1.06424 1.19945 0.98187 0.88590 0.92990 1.41917 1.40089 1.15613 1.16940 0.73582 1.24567 0.91974 0.88497 0.86109 1.67407 1.21259 1.05173 1.32994 1.21744 0.88392 0.88455 0.88282 1.98483 1.91330 1.11065 1.94168 1.21304 1.06570 0.94062 0.96949 0.91759 0.91624 0.90626 0.91303 0.91539 0.88092 0.91308 0.93153 0.98836 0.93111 0.82150 0.76534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.15 0.38 -1.09 16 2 C 0.06 0.85 6.19 37.15 0.23 1.08 16 3 O -0.37 -6.04 10.22 -39.26 -0.40 -6.44 16 4 C 0.45 8.78 7.54 36.01 0.27 9.05 16 5 O -0.46 -10.79 14.20 -18.74 -0.27 -11.06 16 6 C 0.07 1.35 5.38 -4.98 -0.03 1.32 16 7 N -0.46 -10.25 4.34 -171.90 -0.75 -11.00 16 8 C 0.20 5.22 4.27 -4.97 -0.02 5.20 16 9 C -0.48 -14.18 8.80 -34.44 -0.30 -14.49 16 10 H 0.06 1.78 7.76 -52.49 -0.41 1.38 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 13 Si 0.89 23.03 29.54 -169.99 -5.02 18.01 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 17 C 0.07 1.44 4.64 -81.33 -0.38 1.06 16 18 C 0.02 0.46 10.93 -17.39 -0.19 0.27 16 19 N -0.50 -9.33 11.08 -10.75 -0.12 -9.45 16 20 C 0.26 4.19 8.73 -153.74 -1.34 2.85 16 21 N -0.54 -5.29 5.37 -11.95 -0.06 -5.35 16 22 H 0.43 2.37 8.93 -40.82 -0.36 2.00 16 23 C 0.37 3.19 12.25 -90.89 -1.11 2.08 16 24 N -0.55 -7.37 10.30 -11.23 -0.12 -7.49 16 25 C 0.29 4.98 7.37 -16.81 -0.12 4.86 16 26 Cl 0.02 0.37 29.16 -51.86 -1.51 -1.14 16 27 C -0.18 -3.32 6.47 -103.05 -0.67 -3.99 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.07 0.90 8.13 -51.92 -0.42 0.48 16 33 H 0.10 1.59 8.06 -51.93 -0.42 1.17 16 34 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 35 H 0.05 1.47 5.80 -51.93 -0.30 1.17 16 36 H -0.01 -0.17 7.57 -51.92 -0.39 -0.56 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.16 3.00 8.02 -52.49 -0.42 2.58 16 39 H 0.22 0.43 8.06 -52.49 -0.42 0.00 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -38.88 358.48 -9.88 -48.76 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.40 Total: -2.98 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -3.38 Total: 9.77 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.31 Total: -60.33 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.67 Total: -17.49 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.51 Total: -1.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.88 -9.88 -48.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157150580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.518 kcal (2) G-P(sol) polarization free energy of solvation -38.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds