Wall clock time and date at job start Tue Mar 31 2020 20:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45196 * 109.47217 * 2 1 4 4 C 1.34230 * 117.00230 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00140 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99951 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.46995 * 180.02562 * 6 4 3 8 8 C 1.46901 * 110.99966 * 66.04446 * 7 6 4 9 9 C 1.50706 * 109.47096 * 193.95173 * 8 7 6 10 10 H 1.07999 * 119.99744 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99478 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00793 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99443 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47079 * 60.00276 * 13 11 9 15 15 H 1.48499 * 109.46956 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47190 * 300.00051 * 13 11 9 17 17 C 1.41077 * 110.99938 * 189.99763 * 7 6 4 18 18 C 1.36237 * 127.19688 * 296.07045 * 17 7 6 19 19 N 1.33854 * 110.98477 * 179.97438 * 18 17 7 20 20 C 1.31309 * 111.97554 * 0.02562 * 19 18 17 21 21 N 1.37815 * 135.90755 * 179.97438 * 20 19 18 22 22 H 0.96996 * 120.33379 * 0.02562 * 21 20 19 23 23 C 1.34141 * 119.32786 * 179.97438 * 21 20 19 24 24 N 1.30855 * 123.26751 * 0.02562 * 23 21 20 25 25 C 1.33126 * 122.73734 * 359.97438 * 24 23 21 26 26 Cl 1.73597 * 120.50523 * 180.02562 * 25 24 23 27 27 C 1.38715 * 118.99270 * 0.02562 * 25 24 23 28 28 H 1.08997 * 109.47662 * 300.00300 * 1 2 3 29 29 H 1.08998 * 109.47059 * 60.00651 * 1 2 3 30 30 H 1.09000 * 109.46925 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47662 * 239.99699 * 2 1 3 32 32 H 1.09008 * 109.47030 * 119.99403 * 2 1 3 33 33 H 1.08999 * 109.47223 * 60.00238 * 6 4 3 34 34 H 1.09003 * 109.47256 * 299.99800 * 6 4 3 35 35 H 1.08996 * 109.47157 * 313.95486 * 8 7 6 36 36 H 1.09008 * 109.46681 * 73.95655 * 8 7 6 37 37 H 0.96996 * 120.00381 * 179.97438 * 12 11 9 38 38 H 1.07997 * 124.50903 * 0.25079 * 18 17 7 39 39 H 1.07998 * 118.36448 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9374 0.0000 7 7 5.3876 2.8606 0.0001 8 6 5.8843 2.2764 -1.2529 9 6 7.3338 1.8973 -1.0905 10 1 7.8357 2.0723 -0.1504 11 6 8.0191 1.3269 -2.1423 12 7 7.4081 1.1142 -3.2872 13 14 9.8156 0.8563 -1.9407 14 1 9.9470 -0.1380 -0.8456 15 1 10.3180 0.2670 -3.2078 16 1 10.6101 2.0662 -1.6089 17 6 5.9603 4.1295 0.2283 18 6 5.8678 5.2303 -0.5690 19 7 6.5361 6.2626 -0.0405 20 6 7.1037 5.9478 1.1010 21 7 7.8810 6.6006 2.0332 22 1 8.1243 7.5305 1.9033 23 6 8.2968 5.9372 3.1224 24 7 8.0025 4.6836 3.3553 25 6 7.2598 3.9526 2.5269 26 17 6.9042 2.2935 2.8937 27 6 6.7743 4.5368 1.3662 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5843 3.4701 0.8895 34 1 3.5851 3.4691 -0.8905 35 1 5.3013 1.3880 -1.4958 36 1 5.7874 3.0058 -2.0572 37 1 7.8903 0.7133 -4.0272 38 1 5.3236 5.2667 -1.5012 39 1 8.9048 6.4640 3.8430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157150580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:29 Heat of formation + Delta-G solvation = -1.323700 kcal Electronic energy + Delta-G solvation = -27185.723850 eV Core-core repulsion = 23155.518302 eV Total energy + Delta-G solvation = -4030.205548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63299 -41.47610 -39.89981 -38.13263 -37.84932 -36.89412 -35.54748 -34.61427 -32.68554 -31.20597 -30.11934 -29.59343 -26.99539 -25.78499 -24.51691 -24.13432 -23.59696 -22.12626 -21.08014 -19.35909 -19.11615 -18.66055 -18.39533 -17.61211 -17.49467 -17.32760 -16.83560 -16.55442 -16.49234 -15.66946 -15.50248 -15.11477 -14.58533 -14.32419 -14.23255 -14.07114 -13.83889 -13.70027 -13.56641 -13.44268 -13.19353 -12.84163 -12.65679 -12.48126 -12.46081 -12.35255 -12.08361 -11.66198 -11.61076 -11.48337 -11.38219 -11.16547 -10.80120 -10.54097 -9.55034 -9.11708 -8.76018 -8.15686 -6.19766 -1.02894 0.44794 0.67117 1.29025 1.32000 1.32511 1.37028 1.43997 1.60723 2.11588 2.39242 2.42334 2.95186 3.06865 3.18132 3.50058 3.68795 3.85429 4.01220 4.05798 4.13818 4.20694 4.24706 4.29463 4.37329 4.44295 4.84767 4.92109 4.94440 5.10943 5.15602 5.33223 5.37892 5.49189 5.61534 5.66508 5.87546 6.06022 6.42838 6.49386 6.65341 6.89348 6.92447 6.93921 7.45017 8.96007 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008167 B = 0.005410 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.640332 B = 5174.123172 C = 6880.603356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.362 6.362 4 C 0.459 3.541 5 O -0.510 6.510 6 C 0.072 3.928 7 N -0.467 5.467 8 C 0.218 3.782 9 C -0.492 4.492 10 H 0.052 0.948 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.954 3.046 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.272 1.272 17 C 0.038 3.962 18 C 0.007 3.993 19 N -0.522 5.522 20 C 0.268 3.732 21 N -0.516 5.516 22 H 0.452 0.548 23 C 0.413 3.587 24 N -0.565 5.565 25 C 0.297 3.703 26 Cl -0.003 7.003 27 C -0.222 4.222 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.019 0.981 36 H -0.032 1.032 37 H 0.261 0.739 38 H 0.154 0.846 39 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 11.629 15.732 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.301 3.699 5 O -0.397 6.397 6 C -0.055 4.055 7 N -0.189 5.189 8 C 0.094 3.906 9 C -0.531 4.531 10 H 0.070 0.930 11 C -0.196 4.196 12 N -0.577 5.577 13 Si 0.779 3.221 14 H -0.197 1.197 15 H -0.204 1.204 16 H -0.197 1.197 17 C -0.062 4.062 18 C -0.134 4.134 19 N -0.243 5.243 20 C 0.013 3.987 21 N -0.126 5.126 22 H 0.296 0.704 23 C 0.131 3.869 24 N -0.288 5.288 25 C 0.140 3.860 26 Cl 0.026 6.974 27 C -0.235 4.235 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.037 0.963 36 H -0.015 1.015 37 H 0.070 0.930 38 H 0.172 0.828 39 H 0.313 0.687 Dipole moment (debyes) X Y Z Total from point charges -4.528 11.189 16.073 20.101 hybrid contribution 0.356 -0.765 -1.676 1.876 sum -4.172 10.424 14.397 18.258 Atomic orbital electron populations 1.21794 0.89577 1.04405 1.03877 1.23257 0.97484 0.79453 1.01983 1.86458 1.23551 1.33563 1.84379 1.23835 0.80673 0.92973 0.72381 1.90724 1.60804 1.43836 1.44347 1.21600 0.88920 0.89946 1.05071 1.59133 1.02605 1.18631 1.38514 1.19522 0.95476 0.92527 0.83119 1.21185 0.95934 1.38339 0.97617 0.92978 1.25726 1.02500 0.96338 0.95004 1.70056 1.38211 1.45857 1.03572 0.85674 0.80297 0.78627 0.77502 1.19711 1.20431 1.19716 1.19553 1.02229 0.89429 0.95028 1.22672 1.01335 0.89695 0.99698 1.69027 1.15822 1.31733 1.07682 1.20084 0.97685 0.88133 0.92775 1.42084 1.38144 1.16818 1.15564 0.70436 1.26259 0.88506 0.86847 0.85300 1.67493 1.21541 1.07189 1.32540 1.21862 0.88081 0.87917 0.88190 1.98474 1.91588 1.13130 1.94181 1.21362 1.08574 0.95841 0.97735 0.90713 0.91272 0.88132 0.92610 0.91613 0.85292 0.90126 0.96291 1.01460 0.93026 0.82828 0.68705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.05 1.45 6.19 71.98 0.45 1.89 16 3 O -0.36 -12.10 10.22 -51.42 -0.53 -12.62 16 4 C 0.46 18.64 7.54 71.24 0.54 19.18 16 5 O -0.51 -25.28 14.20 21.99 0.31 -24.96 16 6 C 0.07 2.76 5.38 85.56 0.46 3.22 16 7 N -0.47 -21.65 4.34 -697.78 -3.03 -24.68 16 8 C 0.22 12.35 4.27 85.56 0.37 12.72 16 9 C -0.49 -30.00 8.80 25.60 0.23 -29.78 16 10 H 0.05 3.19 7.76 -2.91 -0.02 3.17 16 11 C 0.00 0.07 5.46 84.66 0.46 0.54 16 12 N -0.94 -59.74 13.29 21.45 0.28 -59.46 16 13 Si 0.95 48.02 29.54 68.60 2.03 50.04 16 14 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 15 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 16 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 17 C 0.04 1.63 4.64 39.12 0.18 1.81 16 18 C 0.01 0.30 10.93 83.92 0.92 1.21 16 19 N -0.52 -19.18 11.08 -187.94 -2.08 -21.27 16 20 C 0.27 8.23 8.73 135.96 1.19 9.42 16 21 N -0.52 -7.71 5.37 -191.73 -1.03 -8.74 16 22 H 0.45 2.47 8.93 -92.71 -0.83 1.65 16 23 C 0.41 4.60 12.25 180.44 2.21 6.81 16 24 N -0.56 -13.16 10.30 -189.43 -1.95 -15.11 16 25 C 0.30 9.96 7.37 84.61 0.62 10.59 16 26 Cl 0.00 -0.11 29.16 -2.72 -0.08 -0.19 16 27 C -0.22 -8.31 6.47 -18.85 -0.12 -8.44 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 32 H 0.07 1.84 8.13 -2.38 -0.02 1.82 16 33 H 0.13 4.15 8.06 -2.39 -0.02 4.13 16 34 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 35 H 0.02 1.19 5.80 -2.39 -0.01 1.18 16 36 H -0.03 -1.94 7.57 -2.38 -0.02 -1.96 16 37 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.15 6.20 8.02 -2.91 -0.02 6.18 16 39 H 0.30 -1.55 8.06 -2.91 -0.02 -1.57 16 Total: -1.00 -92.20 358.48 2.45 -89.75 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 0.28 Total: -0.12 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 8.24 Total: 27.36 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -7.81 Total: -129.26 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.21 Total: -37.59 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.04 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -92.20 2.45 -89.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157150580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.427 kcal (2) G-P(sol) polarization free energy of solvation -92.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds