Wall clock time and date at job start Tue Mar 31 2020 20:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45197 * 109.47168 * 2 1 4 4 C 1.34225 * 117.00065 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99937 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00030 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.47109 * 174.59841 * 6 4 3 8 8 C 1.46899 * 111.00390 * 160.13239 * 7 6 4 9 9 C 1.50691 * 109.47263 * 190.00018 * 8 7 6 10 10 H 1.07997 * 120.00260 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99831 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99920 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99770 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47241 * 60.00075 * 13 11 9 15 15 H 1.48505 * 109.46834 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47195 * 299.99611 * 13 11 9 17 17 C 1.38559 * 110.99955 * 284.08268 * 7 6 4 18 18 N 1.32952 * 120.69233 * 302.89194 * 17 7 6 19 19 C 1.32223 * 121.33707 * 179.97438 * 18 17 7 20 20 Cl 1.73604 * 118.83751 * 180.02562 * 19 18 17 21 21 N 1.31616 * 122.32599 * 359.95347 * 19 18 17 22 22 C 1.33575 * 120.41893 * 0.08887 * 21 19 18 23 23 C 1.45913 * 134.86964 * 179.91522 * 22 21 19 24 24 C 1.34623 * 107.05173 * 179.97438 * 23 22 21 25 25 N 1.36403 * 109.87997 * 0.02562 * 24 23 22 26 26 H 0.96997 * 125.09960 * 179.72912 * 25 24 23 27 27 C 1.37583 * 109.79741 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.46940 * 59.99685 * 1 2 3 29 29 H 1.08992 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46851 * 299.99859 * 1 2 3 31 31 H 1.08994 * 109.46851 * 240.00141 * 2 1 3 32 32 H 1.08998 * 109.46940 * 120.00315 * 2 1 3 33 33 H 1.09003 * 109.47406 * 54.59741 * 6 4 3 34 34 H 1.09003 * 109.47392 * 294.59559 * 6 4 3 35 35 H 1.09002 * 109.46661 * 310.00354 * 8 7 6 36 36 H 1.09003 * 109.47279 * 69.99501 * 8 7 6 37 37 H 0.97002 * 120.00172 * 180.02562 * 12 11 9 38 38 H 1.07993 * 126.47036 * 0.02562 * 23 22 21 39 39 H 1.08000 * 125.06031 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3822 2.8627 0.1296 8 6 6.0155 4.1068 -0.3277 9 6 7.5070 3.9093 -0.4130 10 1 7.9411 2.9552 -0.1531 11 6 8.3175 4.9467 -0.8229 12 7 7.7888 6.1084 -1.1399 13 14 10.1664 4.7021 -0.9280 14 1 10.4675 3.6105 -1.8887 15 1 10.8066 5.9597 -1.3904 16 1 10.6951 4.3419 0.4122 17 6 5.7507 2.5678 1.4324 18 7 5.3628 3.3440 2.4396 19 6 5.7066 3.0742 3.6876 20 17 5.1635 4.1315 4.9529 21 7 6.4449 2.0318 4.0045 22 6 6.8802 1.1978 3.0562 23 6 7.6917 -0.0148 3.0450 24 6 7.7900 -0.4122 1.7626 25 7 7.1068 0.4500 0.9561 26 1 7.0359 0.3742 -0.0083 27 6 6.5380 1.4466 1.7152 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5099 3.5002 0.8382 34 1 3.6640 3.4372 -0.9340 35 1 5.6272 4.3719 -1.3110 36 1 5.7948 4.9077 0.3781 37 1 8.3589 6.8381 -1.4286 38 1 8.1299 -0.5018 3.9035 39 1 8.3301 -1.2835 1.4227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:09 Heat of formation + Delta-G solvation = 8.148488 kcal Electronic energy + Delta-G solvation = -27549.304067 eV Core-core repulsion = 23519.509264 eV Total energy + Delta-G solvation = -4029.794803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60971 -40.27237 -38.61644 -37.29058 -36.31498 -35.94667 -32.97446 -32.36595 -31.79948 -29.88609 -29.55565 -28.59411 -26.13151 -23.86711 -23.19138 -23.10828 -21.67782 -20.91117 -19.98024 -18.75833 -17.58278 -17.25335 -16.71787 -16.61215 -16.02481 -15.76295 -15.43792 -14.91690 -14.73102 -14.58198 -14.11910 -13.65851 -13.32391 -13.26127 -13.06631 -12.89880 -12.71921 -12.39421 -12.18647 -11.76615 -11.64089 -11.63738 -11.17091 -11.07607 -11.06110 -10.96834 -10.84876 -10.54025 -10.43022 -10.30544 -10.15368 -9.54121 -8.95269 -8.63938 -8.42567 -8.10793 -7.80502 -6.21008 -4.24357 1.08409 1.56960 1.86396 2.41797 2.65897 2.83251 3.23079 3.28176 3.30570 3.39021 4.03341 4.14752 4.30747 4.41114 4.78782 4.80112 4.89354 4.92717 5.13478 5.15515 5.16859 5.28145 5.42446 5.53298 5.57595 5.62635 5.69518 5.77180 5.81462 6.25305 6.49749 6.54024 6.71139 6.95321 7.07050 7.35909 7.39401 7.66990 7.70004 7.81123 7.96338 8.11788 8.38833 8.78074 9.40211 10.89365 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008329 B = 0.005085 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.993825 B = 5505.100685 C = 6401.555447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.362 6.362 4 C 0.460 3.540 5 O -0.493 6.493 6 C 0.061 3.939 7 N -0.477 5.477 8 C 0.199 3.801 9 C -0.520 4.520 10 H 0.059 0.941 11 C 0.066 3.934 12 N -0.888 5.888 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.276 1.276 17 C 0.416 3.584 18 N -0.530 5.530 19 C 0.351 3.649 20 Cl 0.003 6.997 21 N -0.486 5.486 22 C 0.126 3.874 23 C -0.205 4.205 24 C 0.086 3.914 25 N -0.544 5.544 26 H 0.430 0.570 27 C 0.044 3.956 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.021 0.979 37 H 0.266 0.734 38 H 0.155 0.845 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 -12.244 3.316 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.279 6.279 4 C 0.302 3.698 5 O -0.378 6.378 6 C -0.068 4.068 7 N -0.202 5.202 8 C 0.077 3.923 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.526 5.526 13 Si 0.725 3.275 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.202 1.202 17 C 0.170 3.830 18 N -0.252 5.252 19 C 0.054 3.946 20 Cl 0.030 6.970 21 N -0.204 5.204 22 C -0.012 4.012 23 C -0.232 4.232 24 C -0.048 4.048 25 N -0.144 5.144 26 H 0.269 0.731 27 C -0.072 4.072 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.173 0.827 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.812 -12.093 3.691 15.411 hybrid contribution 1.018 0.105 -0.591 1.181 sum -7.794 -11.987 3.100 14.631 Atomic orbital electron populations 1.21794 0.92798 1.02724 1.03537 1.22941 0.95175 0.80635 1.02335 1.86501 1.24915 1.32013 1.84500 1.23930 0.80251 0.93151 0.72518 1.90597 1.60241 1.42789 1.44210 1.21697 0.88954 0.90073 1.06071 1.60090 1.05281 1.41423 1.13397 1.20055 0.94521 0.81569 0.96180 1.20911 0.90325 0.98329 1.46303 0.92234 1.24886 0.99063 0.94865 0.94946 1.69912 1.35858 1.02490 1.44376 0.86559 0.84748 0.77620 0.78604 1.20024 1.20973 1.20177 1.18913 0.89101 0.86249 0.88736 1.67849 1.27383 1.30525 0.99426 1.22122 0.95163 0.90654 0.86659 1.98374 1.87857 1.62757 1.48001 1.67154 1.12109 1.03798 1.37302 1.19932 0.98752 0.95871 0.86663 1.21288 1.07782 0.97255 0.96877 1.22067 0.96938 0.95729 0.90044 1.41498 1.42013 1.20573 1.10300 0.73060 1.19234 1.01724 0.93669 0.92588 0.91441 0.90464 0.91511 0.91362 0.91619 0.88831 0.85712 0.93538 0.96108 0.92464 0.82696 0.80193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.36 -5.17 10.22 -39.24 -0.40 -5.57 16 4 C 0.46 7.59 7.75 36.01 0.28 7.87 16 5 O -0.49 -8.92 15.39 -18.75 -0.29 -9.21 16 6 C 0.06 1.04 5.56 -4.97 -0.03 1.01 16 7 N -0.48 -9.84 4.07 -175.67 -0.71 -10.55 16 8 C 0.20 4.81 4.67 -4.98 -0.02 4.79 16 9 C -0.52 -13.84 8.72 -34.44 -0.30 -14.14 16 10 H 0.06 1.57 7.23 -52.49 -0.38 1.19 16 11 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 13 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.42 8.86 3.87 -154.69 -0.60 8.27 16 18 N -0.53 -11.47 9.32 -10.80 -0.10 -11.57 16 19 C 0.35 7.27 8.17 -91.94 -0.75 6.52 16 20 Cl 0.00 0.05 29.26 -51.86 -1.52 -1.47 16 21 N -0.49 -9.97 10.46 -8.56 -0.09 -10.06 16 22 C 0.13 2.45 7.57 -83.14 -0.63 1.82 16 23 C -0.21 -3.07 11.07 -37.79 -0.42 -3.48 16 24 C 0.09 1.11 11.82 -16.80 -0.20 0.91 16 25 N -0.54 -8.85 6.05 -10.52 -0.06 -8.91 16 26 H 0.43 6.64 8.96 -40.82 -0.37 6.28 16 27 C 0.04 0.87 6.47 -83.77 -0.54 0.33 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.09 1.60 7.39 -51.93 -0.38 1.22 16 34 H 0.13 1.88 7.73 -51.93 -0.40 1.48 16 35 H 0.05 1.14 7.83 -51.93 -0.41 0.74 16 36 H 0.02 0.56 7.87 -51.93 -0.41 0.15 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -32.42 358.64 -9.19 -41.61 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.44 Total: 2.93 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: -2.69 Total: 15.68 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.23 Total: -65.54 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.69 Total: -14.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -1.52 Total: -1.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.42 -9.19 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.754 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds