Wall clock time and date at job start Tue Mar 31 2020 20:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45197 * 109.47168 * 2 1 4 4 C 1.34225 * 117.00065 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99937 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00030 * 180.02562 * 4 3 2 7 7 N 1.46904 * 109.47109 * 174.59841 * 6 4 3 8 8 C 1.46899 * 111.00390 * 160.13239 * 7 6 4 9 9 C 1.50691 * 109.47263 * 190.00018 * 8 7 6 10 10 H 1.07997 * 120.00260 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99831 * 179.97438 * 9 8 7 12 12 N 1.31509 * 119.99920 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99770 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47241 * 60.00075 * 13 11 9 15 15 H 1.48505 * 109.46834 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47195 * 299.99611 * 13 11 9 17 17 C 1.38559 * 110.99955 * 284.08268 * 7 6 4 18 18 N 1.32952 * 120.69233 * 302.89194 * 17 7 6 19 19 C 1.32223 * 121.33707 * 179.97438 * 18 17 7 20 20 Cl 1.73604 * 118.83751 * 180.02562 * 19 18 17 21 21 N 1.31616 * 122.32599 * 359.95347 * 19 18 17 22 22 C 1.33575 * 120.41893 * 0.08887 * 21 19 18 23 23 C 1.45913 * 134.86964 * 179.91522 * 22 21 19 24 24 C 1.34623 * 107.05173 * 179.97438 * 23 22 21 25 25 N 1.36403 * 109.87997 * 0.02562 * 24 23 22 26 26 H 0.96997 * 125.09960 * 179.72912 * 25 24 23 27 27 C 1.37583 * 109.79741 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.46940 * 59.99685 * 1 2 3 29 29 H 1.08992 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46851 * 299.99859 * 1 2 3 31 31 H 1.08994 * 109.46851 * 240.00141 * 2 1 3 32 32 H 1.08998 * 109.46940 * 120.00315 * 2 1 3 33 33 H 1.09003 * 109.47406 * 54.59741 * 6 4 3 34 34 H 1.09003 * 109.47392 * 294.59559 * 6 4 3 35 35 H 1.09002 * 109.46661 * 310.00354 * 8 7 6 36 36 H 1.09003 * 109.47279 * 69.99501 * 8 7 6 37 37 H 0.97002 * 120.00172 * 180.02562 * 12 11 9 38 38 H 1.07993 * 126.47036 * 0.02562 * 23 22 21 39 39 H 1.08000 * 125.06031 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3822 2.8627 0.1296 8 6 6.0155 4.1068 -0.3277 9 6 7.5070 3.9093 -0.4130 10 1 7.9411 2.9552 -0.1531 11 6 8.3175 4.9467 -0.8229 12 7 7.7888 6.1084 -1.1399 13 14 10.1664 4.7021 -0.9280 14 1 10.4675 3.6105 -1.8887 15 1 10.8066 5.9597 -1.3904 16 1 10.6951 4.3419 0.4122 17 6 5.7507 2.5678 1.4324 18 7 5.3628 3.3440 2.4396 19 6 5.7066 3.0742 3.6876 20 17 5.1635 4.1315 4.9529 21 7 6.4449 2.0318 4.0045 22 6 6.8802 1.1978 3.0562 23 6 7.6917 -0.0148 3.0450 24 6 7.7900 -0.4122 1.7626 25 7 7.1068 0.4500 0.9561 26 1 7.0359 0.3742 -0.0083 27 6 6.5380 1.4466 1.7152 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5099 3.5002 0.8382 34 1 3.6640 3.4372 -0.9340 35 1 5.6272 4.3719 -1.3110 36 1 5.7948 4.9077 0.3781 37 1 8.3589 6.8381 -1.4286 38 1 8.1299 -0.5018 3.9035 39 1 8.3301 -1.2835 1.4227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:09 Heat of formation + Delta-G solvation = -12.845777 kcal Electronic energy + Delta-G solvation = -27550.214447 eV Core-core repulsion = 23519.509264 eV Total energy + Delta-G solvation = -4030.705183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.99645 -41.53752 -40.00208 -38.75205 -37.67684 -37.34456 -34.92430 -33.89219 -32.72753 -31.15110 -30.94243 -30.29707 -27.77121 -25.44600 -24.63762 -24.26161 -23.15306 -22.15407 -21.28625 -20.14949 -19.01354 -18.70192 -18.28509 -17.91040 -17.61686 -17.06904 -16.99765 -16.48078 -16.17835 -16.02930 -15.50705 -15.06545 -14.64161 -14.62637 -14.21423 -14.15700 -13.91690 -13.65433 -13.54619 -13.38300 -12.88665 -12.83409 -12.72882 -12.62451 -12.53142 -12.49059 -12.45559 -12.20140 -11.90690 -11.78866 -11.55038 -11.34079 -10.71944 -10.44874 -9.81395 -9.72172 -9.15478 -8.27918 -6.37080 -0.36225 0.08427 0.39688 1.10822 1.35195 1.38086 1.43163 1.47811 1.65450 2.14710 2.32589 2.57557 2.66198 3.03164 3.07878 3.48069 3.68705 3.80391 3.94548 3.97493 4.06578 4.15172 4.28119 4.31387 4.34671 4.62229 4.77993 4.89662 4.90260 5.05081 5.10466 5.13315 5.32500 5.38531 5.43272 5.62090 5.80372 5.89051 6.01062 6.18861 6.49259 6.69546 6.72761 6.88289 7.30941 8.82803 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008329 B = 0.005085 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.993825 B = 5505.100685 C = 6401.555447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.362 6.362 4 C 0.467 3.533 5 O -0.510 6.510 6 C 0.056 3.944 7 N -0.473 5.473 8 C 0.216 3.784 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.016 3.984 12 N -0.921 5.921 13 Si 0.958 3.042 14 H -0.259 1.259 15 H -0.281 1.281 16 H -0.281 1.281 17 C 0.393 3.607 18 N -0.553 5.553 19 C 0.331 3.669 20 Cl 0.020 6.980 21 N -0.496 5.496 22 C 0.102 3.898 23 C -0.217 4.217 24 C 0.118 3.882 25 N -0.545 5.545 26 H 0.433 0.567 27 C 0.021 3.979 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.038 0.962 36 H -0.013 1.013 37 H 0.267 0.733 38 H 0.185 0.815 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 -14.895 3.033 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.279 6.279 4 C 0.309 3.691 5 O -0.397 6.397 6 C -0.072 4.072 7 N -0.197 5.197 8 C 0.093 3.907 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.184 4.184 12 N -0.561 5.561 13 Si 0.783 3.217 14 H -0.183 1.183 15 H -0.206 1.206 16 H -0.207 1.207 17 C 0.149 3.851 18 N -0.275 5.275 19 C 0.033 3.967 20 Cl 0.048 6.952 21 N -0.214 5.214 22 C -0.036 4.036 23 C -0.242 4.242 24 C -0.015 4.015 25 N -0.145 5.145 26 H 0.273 0.727 27 C -0.095 4.095 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.159 0.841 35 H 0.056 0.944 36 H 0.005 0.995 37 H 0.075 0.925 38 H 0.202 0.798 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -8.104 -14.767 3.403 17.185 hybrid contribution 0.720 0.811 -0.457 1.177 sum -7.383 -13.956 2.946 16.061 Atomic orbital electron populations 1.21824 0.90130 1.04476 1.03723 1.23288 0.97214 0.78955 1.02349 1.86492 1.23364 1.34097 1.83931 1.23583 0.80968 0.92333 0.72196 1.90572 1.60848 1.43099 1.45208 1.21751 0.87302 0.91300 1.06810 1.59958 1.06940 1.39112 1.13681 1.19623 0.94022 0.82320 0.94752 1.21197 0.91570 0.98238 1.45596 0.92274 1.25688 1.03311 0.94645 0.94770 1.70024 1.37309 1.03234 1.45490 0.85612 0.79655 0.78047 0.78435 1.18332 1.20583 1.20711 1.19083 0.90205 0.87263 0.88595 1.67789 1.28273 1.31445 1.00025 1.22433 0.95815 0.91409 0.86997 1.98360 1.87695 1.62221 1.46959 1.67226 1.12350 1.04031 1.37770 1.20753 0.99325 0.97127 0.86438 1.21784 1.07611 0.95899 0.98929 1.23070 0.94192 0.95461 0.88759 1.41704 1.41880 1.20258 1.10703 0.72678 1.19348 1.02167 0.94368 0.93619 0.90948 0.87879 0.91619 0.90867 0.92126 0.89167 0.84059 0.94376 0.99492 0.92451 0.79797 0.74262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 10.29 71.99 0.74 -1.34 16 2 C 0.06 1.19 6.19 71.99 0.45 1.63 16 3 O -0.36 -10.17 10.22 -51.37 -0.53 -10.69 16 4 C 0.47 15.45 7.75 71.24 0.55 16.00 16 5 O -0.51 -18.32 15.39 21.96 0.34 -17.98 16 6 C 0.06 1.99 5.56 85.56 0.48 2.47 16 7 N -0.47 -19.98 4.07 -709.70 -2.89 -22.86 16 8 C 0.22 10.85 4.67 85.55 0.40 11.25 16 9 C -0.53 -28.46 8.72 25.60 0.22 -28.24 16 10 H 0.06 3.13 7.23 -2.91 -0.02 3.11 16 11 C 0.02 0.87 5.46 84.66 0.46 1.33 16 12 N -0.92 -53.19 13.29 21.45 0.28 -52.91 16 13 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 C 0.39 17.12 3.87 133.23 0.52 17.63 16 18 N -0.55 -24.80 9.32 -188.08 -1.75 -26.55 16 19 C 0.33 14.03 8.17 180.81 1.48 15.50 16 20 Cl 0.02 0.72 29.26 -2.72 -0.08 0.64 16 21 N -0.50 -20.47 10.46 -180.99 -1.89 -22.37 16 22 C 0.10 3.90 7.57 41.45 0.31 4.22 16 23 C -0.22 -5.82 11.07 23.43 0.26 -5.56 16 24 C 0.12 2.57 11.82 83.15 0.98 3.55 16 25 N -0.54 -16.64 6.05 -187.19 -1.13 -17.78 16 26 H 0.43 12.59 8.96 -92.71 -0.83 11.76 16 27 C 0.02 0.84 6.47 39.22 0.25 1.10 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 32 H 0.06 1.36 8.13 -2.39 -0.02 1.35 16 33 H 0.09 3.24 7.39 -2.39 -0.02 3.22 16 34 H 0.14 4.37 7.73 -2.39 -0.02 4.35 16 35 H 0.04 1.95 7.83 -2.39 -0.02 1.93 16 36 H -0.01 -0.72 7.87 -2.39 -0.02 -0.74 16 37 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 38 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.24 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -72.46 358.64 1.76 -70.70 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.28 Total: 14.92 kcal Atomic # 6 Polarization: 32.45 SS G_CDS: 7.10 Total: 39.55 kcal Atomic # 7 Polarization: -135.09 SS G_CDS: -7.38 Total: -142.47 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.19 Total: -28.67 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -72.46 1.76 -70.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.856 kcal (2) G-P(sol) polarization free energy of solvation -72.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds