Wall clock time and date at job start Tue Mar 31 2020 20:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47539 * 2 1 4 4 C 1.34229 * 117.00253 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99810 * 359.97438 * 4 3 2 6 6 C 1.50691 * 119.99982 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47361 * 179.97438 * 6 4 3 8 8 C 1.46899 * 111.00384 * 170.00043 * 7 6 4 9 9 C 1.50705 * 109.47323 * 190.00464 * 8 7 6 10 10 H 1.07995 * 119.99923 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99697 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00353 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99647 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47249 * 59.99364 * 13 11 9 15 15 H 1.48494 * 109.47046 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46860 * 299.99628 * 13 11 9 17 17 C 1.39090 * 111.00471 * 293.95851 * 7 6 4 18 18 C 1.39014 * 120.97512 * 296.02659 * 17 7 6 19 19 C 1.38426 * 119.44308 * 179.97438 * 18 17 7 20 20 Cl 1.73597 * 119.30376 * 180.29360 * 19 18 17 21 21 N 1.31914 * 121.39864 * 0.02562 * 19 18 17 22 22 C 1.32576 * 121.73971 * 0.02562 * 21 19 18 23 23 N 1.37779 * 133.70952 * 179.97438 * 22 21 19 24 24 H 0.97001 * 126.28019 * 0.02562 * 23 22 21 25 25 C 1.36232 * 107.43657 * 180.02562 * 23 22 21 26 26 N 1.30062 * 109.99331 * 359.97438 * 25 23 22 27 27 C 1.35674 * 109.48190 * 0.02562 * 26 25 23 28 28 H 1.08996 * 109.47113 * 300.00104 * 1 2 3 29 29 H 1.09001 * 109.46785 * 59.99706 * 1 2 3 30 30 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.47080 * 239.99731 * 2 1 3 32 32 H 1.09000 * 109.47272 * 120.00086 * 2 1 3 33 33 H 1.09007 * 109.47167 * 60.00154 * 6 4 3 34 34 H 1.09002 * 109.47736 * 299.99984 * 6 4 3 35 35 H 1.09002 * 109.46967 * 310.00578 * 8 7 6 36 36 H 1.08997 * 109.47027 * 70.00161 * 8 7 6 37 37 H 0.96999 * 119.99974 * 180.02562 * 12 11 9 38 38 H 1.08001 * 120.28017 * 0.02562 * 18 17 7 39 39 H 1.08001 * 125.00319 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9372 -0.0012 7 7 5.3878 2.8604 -0.0010 8 6 5.9843 4.1814 -0.2398 9 6 7.4647 4.0288 -0.4771 10 1 7.9172 3.0485 -0.4525 11 6 8.2414 5.1407 -0.7244 12 7 7.6904 6.3345 -0.7538 13 14 10.0765 4.9516 -1.0178 14 1 10.3017 4.0857 -2.2030 15 1 10.6794 6.2870 -1.2592 16 1 10.7072 4.3316 0.1751 17 6 5.8580 2.3083 1.1858 18 6 5.6595 2.9515 2.4021 19 6 6.1406 2.3732 3.5642 20 17 5.8840 3.1758 5.0819 21 7 6.7853 1.2225 3.5433 22 6 7.0039 0.5660 2.4125 23 7 7.6321 -0.6217 2.1073 24 1 8.0559 -1.2253 2.7374 25 6 7.5488 -0.7927 0.7584 26 7 6.9136 0.2073 0.2217 27 6 6.5490 1.0842 1.1907 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5852 3.4697 0.8889 34 1 3.5846 3.4692 -0.8912 35 1 5.5210 4.6364 -1.1152 36 1 5.8194 4.8171 0.6302 37 1 8.2369 7.1167 -0.9281 38 1 5.1337 3.8941 2.4402 39 1 7.9510 -1.6347 0.2146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:22 Heat of formation + Delta-G solvation = 16.989224 kcal Electronic energy + Delta-G solvation = -27578.822382 eV Core-core repulsion = 23549.410942 eV Total energy + Delta-G solvation = -4029.411440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96732 -40.21216 -38.61609 -37.13941 -36.15920 -35.76701 -32.87033 -32.48190 -31.76543 -30.18460 -29.16967 -28.47893 -25.86975 -23.74370 -23.06584 -22.92919 -21.68668 -21.02371 -20.34854 -18.18109 -17.60503 -17.16684 -16.75227 -16.50700 -16.00570 -15.67520 -15.38887 -14.94548 -14.69497 -14.38930 -14.06205 -13.92987 -13.54293 -13.14749 -13.11865 -12.88484 -12.71107 -12.33390 -12.11625 -11.66054 -11.53493 -11.51512 -11.14815 -10.98771 -10.86722 -10.76328 -10.52898 -10.48108 -10.38289 -10.11892 -9.95938 -9.38507 -8.97541 -8.53187 -8.38221 -7.95800 -7.78290 -6.10123 -4.10369 1.05706 1.53576 1.89648 2.59418 2.78781 2.99370 3.16890 3.33352 3.36077 3.41014 4.09353 4.22945 4.45799 4.56052 4.86976 4.87270 4.92072 5.02167 5.11053 5.22460 5.27416 5.35024 5.46562 5.57817 5.60300 5.64503 5.69356 5.86511 5.95156 6.07641 6.24507 6.64465 6.81088 6.90294 7.06795 7.34731 7.53796 7.82466 7.95127 7.98750 8.13694 8.22696 8.31770 8.96774 9.53806 11.00644 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.005066 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.959649 B = 5525.867192 C = 6419.828455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.366 6.366 4 C 0.449 3.551 5 O -0.469 6.469 6 C 0.067 3.933 7 N -0.486 5.486 8 C 0.199 3.801 9 C -0.508 4.508 10 H 0.066 0.934 11 C 0.062 3.938 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.259 3.741 18 C -0.213 4.213 19 C 0.226 3.774 20 Cl -0.037 7.037 21 N -0.498 5.498 22 C 0.251 3.749 23 N -0.596 5.596 24 H 0.423 0.577 25 C 0.249 3.751 26 N -0.430 5.430 27 C 0.056 3.944 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.046 0.954 36 H 0.008 0.992 37 H 0.264 0.736 38 H 0.148 0.852 39 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 -12.130 5.718 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.284 6.284 4 C 0.289 3.711 5 O -0.352 6.352 6 C -0.061 4.061 7 N -0.208 5.208 8 C 0.077 3.923 9 C -0.546 4.546 10 H 0.084 0.916 11 C -0.140 4.140 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.204 1.204 17 C 0.155 3.845 18 C -0.239 4.239 19 C 0.052 3.948 20 Cl -0.009 7.009 21 N -0.215 5.215 22 C 0.014 3.986 23 N -0.212 5.212 24 H 0.261 0.739 25 C -0.038 4.038 26 N -0.146 5.146 27 C -0.066 4.066 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.166 0.834 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.905 -12.717 5.213 16.377 hybrid contribution 1.044 0.292 1.034 1.498 sum -7.861 -12.424 6.247 15.975 Atomic orbital electron populations 1.21789 0.92968 1.02610 1.03422 1.22891 0.94954 0.80846 1.02282 1.86484 1.25202 1.31823 1.84911 1.23868 0.80259 0.93324 0.73610 1.90746 1.59635 1.42324 1.42511 1.21688 0.89146 0.90271 1.04964 1.59423 1.02135 1.29605 1.29678 1.20036 0.95557 0.79665 0.97028 1.21018 0.91456 0.93776 1.48349 0.91606 1.24881 0.98847 0.95000 0.95255 1.69914 1.36089 0.98039 1.49473 0.86553 0.84888 0.77122 0.78917 1.19969 1.21199 1.20396 1.17997 0.89403 0.88771 0.88365 1.22033 1.07580 1.03080 0.91249 1.20743 0.96626 0.90422 0.87001 1.98374 1.94616 1.76554 1.31347 1.65369 1.18518 1.08837 1.28794 1.18393 0.99588 0.89948 0.90659 1.42806 1.49740 1.18796 1.09852 0.73874 1.25551 0.99125 1.00084 0.79055 1.70495 1.12457 1.01105 1.30586 1.19222 1.02114 0.96108 0.89151 0.91614 0.91489 0.90593 0.91395 0.91810 0.90744 0.85881 0.93620 0.97467 0.92686 0.83440 0.76474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 37.16 0.38 -0.89 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.33 10.22 -39.26 -0.40 -5.74 16 4 C 0.45 7.71 7.72 36.00 0.28 7.99 16 5 O -0.47 -9.30 13.49 -18.75 -0.25 -9.55 16 6 C 0.07 1.14 5.46 -4.98 -0.03 1.11 16 7 N -0.49 -10.41 4.28 -173.47 -0.74 -11.15 16 8 C 0.20 4.85 4.59 -4.97 -0.02 4.82 16 9 C -0.51 -14.06 8.73 -34.44 -0.30 -14.36 16 10 H 0.07 1.92 7.63 -52.49 -0.40 1.52 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 13 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.26 5.49 2.89 -83.40 -0.24 5.25 16 18 C -0.21 -4.12 8.27 -39.22 -0.32 -4.44 16 19 C 0.23 4.19 7.26 -17.45 -0.13 4.06 16 20 Cl -0.04 -0.58 29.09 -51.86 -1.51 -2.09 16 21 N -0.50 -9.46 10.36 -9.49 -0.10 -9.56 16 22 C 0.25 4.70 8.45 -155.61 -1.32 3.39 16 23 N -0.60 -8.36 6.22 -13.27 -0.08 -8.44 16 24 H 0.42 4.18 8.96 -40.82 -0.37 3.81 16 25 C 0.25 3.56 12.98 -89.64 -1.16 2.40 16 26 N -0.43 -8.56 10.73 -11.88 -0.13 -8.69 16 27 C 0.06 1.18 5.87 -84.52 -0.50 0.68 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.81 8.13 -51.92 -0.42 0.39 16 32 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.07 1.12 7.23 -51.93 -0.38 0.74 16 34 H 0.12 1.87 7.93 -51.93 -0.41 1.46 16 35 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 36 H 0.01 0.19 7.00 -51.93 -0.36 -0.18 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.15 2.61 7.12 -52.49 -0.37 2.23 16 39 H 0.22 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -34.89 353.56 -9.77 -44.66 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.37 Total: 0.51 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -3.22 Total: 12.64 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.31 Total: -62.70 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.65 Total: -15.29 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.51 Total: -2.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.89 -9.77 -44.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.647 kcal (2) G-P(sol) polarization free energy of solvation -34.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds