Wall clock time and date at job start Tue Mar 31 2020 20:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.47539 * 2 1 4 4 C 1.34229 * 117.00253 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99810 * 359.97438 * 4 3 2 6 6 C 1.50691 * 119.99982 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47361 * 179.97438 * 6 4 3 8 8 C 1.46899 * 111.00384 * 170.00043 * 7 6 4 9 9 C 1.50705 * 109.47323 * 190.00464 * 8 7 6 10 10 H 1.07995 * 119.99923 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99697 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00353 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99647 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47249 * 59.99364 * 13 11 9 15 15 H 1.48494 * 109.47046 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46860 * 299.99628 * 13 11 9 17 17 C 1.39090 * 111.00471 * 293.95851 * 7 6 4 18 18 C 1.39014 * 120.97512 * 296.02659 * 17 7 6 19 19 C 1.38426 * 119.44308 * 179.97438 * 18 17 7 20 20 Cl 1.73597 * 119.30376 * 180.29360 * 19 18 17 21 21 N 1.31914 * 121.39864 * 0.02562 * 19 18 17 22 22 C 1.32576 * 121.73971 * 0.02562 * 21 19 18 23 23 N 1.37779 * 133.70952 * 179.97438 * 22 21 19 24 24 H 0.97001 * 126.28019 * 0.02562 * 23 22 21 25 25 C 1.36232 * 107.43657 * 180.02562 * 23 22 21 26 26 N 1.30062 * 109.99331 * 359.97438 * 25 23 22 27 27 C 1.35674 * 109.48190 * 0.02562 * 26 25 23 28 28 H 1.08996 * 109.47113 * 300.00104 * 1 2 3 29 29 H 1.09001 * 109.46785 * 59.99706 * 1 2 3 30 30 H 1.09003 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.47080 * 239.99731 * 2 1 3 32 32 H 1.09000 * 109.47272 * 120.00086 * 2 1 3 33 33 H 1.09007 * 109.47167 * 60.00154 * 6 4 3 34 34 H 1.09002 * 109.47736 * 299.99984 * 6 4 3 35 35 H 1.09002 * 109.46967 * 310.00578 * 8 7 6 36 36 H 1.08997 * 109.47027 * 70.00161 * 8 7 6 37 37 H 0.96999 * 119.99974 * 180.02562 * 12 11 9 38 38 H 1.08001 * 120.28017 * 0.02562 * 18 17 7 39 39 H 1.08001 * 125.00319 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9372 -0.0012 7 7 5.3878 2.8604 -0.0010 8 6 5.9843 4.1814 -0.2398 9 6 7.4647 4.0288 -0.4771 10 1 7.9172 3.0485 -0.4525 11 6 8.2414 5.1407 -0.7244 12 7 7.6904 6.3345 -0.7538 13 14 10.0765 4.9516 -1.0178 14 1 10.3017 4.0857 -2.2030 15 1 10.6794 6.2870 -1.2592 16 1 10.7072 4.3316 0.1751 17 6 5.8580 2.3083 1.1858 18 6 5.6595 2.9515 2.4021 19 6 6.1406 2.3732 3.5642 20 17 5.8840 3.1758 5.0819 21 7 6.7853 1.2225 3.5433 22 6 7.0039 0.5660 2.4125 23 7 7.6321 -0.6217 2.1073 24 1 8.0559 -1.2253 2.7374 25 6 7.5488 -0.7927 0.7584 26 7 6.9136 0.2073 0.2217 27 6 6.5490 1.0842 1.1907 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5852 3.4697 0.8889 34 1 3.5846 3.4692 -0.8912 35 1 5.5210 4.6364 -1.1152 36 1 5.8194 4.8171 0.6302 37 1 8.2369 7.1167 -0.9281 38 1 5.1337 3.8941 2.4402 39 1 7.9510 -1.6347 0.2146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:22 Heat of formation + Delta-G solvation = -5.555203 kcal Electronic energy + Delta-G solvation = -27579.799981 eV Core-core repulsion = 23549.410942 eV Total energy + Delta-G solvation = -4030.389040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.29588 -41.52281 -40.00940 -38.53950 -37.46227 -37.16354 -34.81855 -33.92217 -32.70019 -31.58819 -30.53093 -30.19809 -27.53140 -25.30785 -24.32140 -24.16962 -23.18761 -22.32359 -21.69100 -19.54403 -19.09296 -18.49186 -18.30305 -17.89494 -17.55346 -16.99746 -16.82469 -16.52720 -16.26483 -15.72624 -15.52320 -15.12281 -14.97730 -14.50274 -14.47169 -14.17306 -14.09060 -13.59041 -13.45338 -13.35883 -12.81298 -12.77047 -12.65843 -12.47917 -12.44600 -12.30566 -12.12541 -11.88421 -11.85154 -11.59387 -11.47939 -11.18193 -10.63596 -10.38055 -9.78194 -9.42489 -9.33192 -8.22050 -6.27914 -0.32697 0.08393 0.54192 1.26488 1.37238 1.38667 1.46167 1.58271 1.78841 1.90410 2.38457 2.65854 2.81105 3.12827 3.35347 3.59818 3.75572 3.79344 3.99895 4.09750 4.12154 4.17945 4.21568 4.29141 4.35209 4.58752 4.71277 4.83142 4.86868 4.93516 5.00129 5.15116 5.18994 5.47364 5.48713 5.58837 5.91095 6.13115 6.22231 6.35575 6.67911 6.81665 6.87272 6.97622 7.39210 8.88215 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.005066 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.959649 B = 5525.867192 C = 6419.828455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 O -0.363 6.363 4 C 0.455 3.545 5 O -0.497 6.497 6 C 0.062 3.938 7 N -0.497 5.497 8 C 0.216 3.784 9 C -0.518 4.518 10 H 0.046 0.954 11 C 0.019 3.981 12 N -0.921 5.921 13 Si 0.951 3.049 14 H -0.271 1.271 15 H -0.275 1.275 16 H -0.281 1.281 17 C 0.231 3.769 18 C -0.218 4.218 19 C 0.212 3.788 20 Cl -0.013 7.013 21 N -0.499 5.499 22 C 0.234 3.766 23 N -0.576 5.576 24 H 0.444 0.556 25 C 0.281 3.719 26 N -0.491 5.491 27 C 0.035 3.965 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.138 0.862 35 H 0.033 0.967 36 H -0.004 1.004 37 H 0.266 0.734 38 H 0.155 0.845 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.333 -13.698 6.143 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.016 4.016 3 O -0.280 6.280 4 C 0.296 3.704 5 O -0.383 6.383 6 C -0.065 4.065 7 N -0.219 5.219 8 C 0.093 3.907 9 C -0.557 4.557 10 H 0.064 0.936 11 C -0.180 4.180 12 N -0.560 5.560 13 Si 0.777 3.223 14 H -0.197 1.197 15 H -0.200 1.200 16 H -0.206 1.206 17 C 0.127 3.873 18 C -0.244 4.244 19 C 0.038 3.962 20 Cl 0.015 6.985 21 N -0.216 5.216 22 C -0.004 4.004 23 N -0.194 5.194 24 H 0.287 0.713 25 C -0.006 4.006 26 N -0.208 5.208 27 C -0.087 4.087 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.051 0.949 36 H 0.014 0.986 37 H 0.075 0.925 38 H 0.172 0.828 39 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -8.875 -14.311 5.668 17.768 hybrid contribution 0.978 0.637 0.925 1.490 sum -7.897 -13.673 6.594 17.111 Atomic orbital electron populations 1.21808 0.90005 1.04347 1.03801 1.23205 0.97186 0.79320 1.01927 1.86477 1.23568 1.33639 1.84308 1.23751 0.80908 0.92811 0.72918 1.90733 1.60478 1.43087 1.43991 1.21795 0.87073 0.91060 1.06563 1.59183 1.04338 1.27600 1.30824 1.19633 0.94108 0.81209 0.95792 1.21179 0.93329 0.92887 1.48272 0.93575 1.25553 1.02531 0.94806 0.95157 1.69989 1.37366 0.98490 1.50204 0.85709 0.80544 0.77459 0.78564 1.19662 1.20032 1.20636 1.18192 0.90788 0.89730 0.88561 1.22126 1.07713 1.03305 0.91279 1.20924 0.96739 0.90620 0.87883 1.98370 1.94484 1.76067 1.29544 1.65495 1.18437 1.08924 1.28760 1.18691 1.00227 0.91368 0.90092 1.42820 1.48689 1.17541 1.10380 0.71346 1.26682 0.95583 0.99434 0.78948 1.70444 1.15586 1.03018 1.31797 1.19504 1.02287 0.96541 0.90397 0.91255 0.91056 0.88144 0.91709 0.92298 0.88801 0.84454 0.94883 0.98602 0.92474 0.82768 0.70850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.29 71.98 0.74 -1.39 16 2 C 0.06 1.31 6.19 71.98 0.45 1.75 16 3 O -0.36 -10.38 10.22 -51.41 -0.53 -10.91 16 4 C 0.45 15.72 7.72 71.23 0.55 16.27 16 5 O -0.50 -20.00 13.49 21.96 0.30 -19.70 16 6 C 0.06 2.15 5.46 85.55 0.47 2.61 16 7 N -0.50 -21.85 4.28 -702.72 -3.01 -24.85 16 8 C 0.22 10.83 4.59 85.56 0.39 11.22 16 9 C -0.52 -29.38 8.73 25.60 0.22 -29.15 16 10 H 0.05 2.76 7.63 -2.91 -0.02 2.74 16 11 C 0.02 1.07 5.46 84.66 0.46 1.53 16 12 N -0.92 -53.11 13.29 21.45 0.28 -52.82 16 13 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 17 C 0.23 10.01 2.89 38.74 0.11 10.12 16 18 C -0.22 -8.57 8.27 22.50 0.19 -8.39 16 19 C 0.21 7.86 7.26 84.73 0.62 8.47 16 20 Cl -0.01 -0.40 29.09 -2.72 -0.08 -0.48 16 21 N -0.50 -18.71 10.36 -183.95 -1.91 -20.61 16 22 C 0.23 8.63 8.45 133.71 1.13 9.76 16 23 N -0.58 -14.92 6.22 -195.91 -1.22 -16.14 16 24 H 0.44 7.47 8.96 -92.71 -0.83 6.64 16 25 C 0.28 7.33 12.98 180.01 2.34 9.67 16 26 N -0.49 -19.33 10.73 -191.51 -2.05 -21.38 16 27 C 0.03 1.46 5.87 39.62 0.23 1.70 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.52 8.13 -2.38 -0.02 1.50 16 32 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 33 H 0.09 2.85 7.23 -2.38 -0.02 2.83 16 34 H 0.14 4.23 7.93 -2.39 -0.02 4.21 16 35 H 0.03 1.72 7.93 -2.39 -0.02 1.70 16 36 H 0.00 -0.19 7.00 -2.39 -0.02 -0.21 16 37 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.15 5.59 7.12 -2.91 -0.02 5.57 16 39 H 0.28 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -77.27 353.56 1.99 -75.28 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.28 Total: 10.21 kcal Atomic # 6 Polarization: 26.28 SS G_CDS: 7.89 Total: 34.18 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -7.90 Total: -135.81 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.23 Total: -30.61 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -77.27 1.99 -75.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.724 kcal (2) G-P(sol) polarization free energy of solvation -77.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds