Wall clock time and date at job start Tue Mar 31 2020 20:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.46856 * 2 1 4 4 C 1.34235 * 116.99831 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99935 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99796 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.47068 * 174.78299 * 6 4 3 8 8 C 1.46893 * 110.99798 * 295.23052 * 7 6 4 9 9 C 1.50705 * 109.46953 * 288.94283 * 8 7 6 10 10 H 1.07999 * 120.00114 * 355.30572 * 9 8 7 11 11 C 1.37879 * 120.00001 * 175.57974 * 9 8 7 12 12 N 1.31519 * 120.00041 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46917 * 90.00308 * 13 11 9 15 15 H 1.48503 * 109.47196 * 209.99789 * 13 11 9 16 16 H 1.48493 * 109.47453 * 330.00303 * 13 11 9 17 17 C 1.39106 * 110.99829 * 59.18210 * 7 6 4 18 18 N 1.32233 * 119.41756 * 250.56498 * 17 7 6 19 19 C 1.32515 * 121.35816 * 179.97438 * 18 17 7 20 20 N 1.37802 * 133.74397 * 179.97438 * 19 18 17 21 21 H 0.97000 * 126.29123 * 0.04949 * 20 19 18 22 22 C 1.36235 * 107.42653 * 180.02562 * 20 19 18 23 23 N 1.30066 * 110.04407 * 359.97438 * 22 20 19 24 24 C 1.35767 * 109.50137 * 0.02562 * 23 22 20 25 25 C 1.40002 * 133.74091 * 180.02562 * 24 23 22 26 26 C 1.36975 * 118.37510 * 179.78364 * 25 24 23 27 27 Cl 1.73601 * 120.19423 * 180.21985 * 26 25 24 28 28 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47452 * 299.99726 * 1 2 3 30 30 H 1.09004 * 109.47292 * 59.99967 * 1 2 3 31 31 H 1.08999 * 109.47604 * 239.99741 * 2 1 3 32 32 H 1.09002 * 109.46808 * 120.00223 * 2 1 3 33 33 H 1.08995 * 109.47310 * 54.77864 * 6 4 3 34 34 H 1.09006 * 109.46827 * 294.77956 * 6 4 3 35 35 H 1.09006 * 109.47447 * 168.94535 * 8 7 6 36 36 H 1.09003 * 109.47375 * 48.94380 * 8 7 6 37 37 H 0.96996 * 120.00259 * 180.02562 * 12 11 9 38 38 H 1.08003 * 124.97447 * 180.02562 * 22 20 19 39 39 H 1.07998 * 120.81254 * 359.97030 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 7 5.3823 2.8628 0.1276 8 6 5.7700 2.2953 1.4258 9 6 5.4745 3.2912 2.5177 10 1 5.1132 4.2773 2.2659 11 6 5.6709 2.9452 3.8379 12 7 6.1165 1.7463 4.1443 13 14 5.3053 4.1798 5.1912 14 1 3.8915 4.0371 5.6226 15 1 6.2032 3.9278 6.3469 16 1 5.5304 5.5557 4.6801 17 6 5.9367 2.1350 -0.9202 18 7 6.4485 0.9393 -0.6811 19 6 6.9858 0.2128 -1.6504 20 7 7.5777 -1.0309 -1.6928 21 1 7.7064 -1.6313 -0.9419 22 6 7.9486 -1.2625 -2.9831 23 7 7.6238 -0.2479 -3.7293 24 6 7.0236 0.7017 -2.9668 25 6 6.4857 1.9651 -3.2401 26 6 5.9373 2.6766 -2.2061 27 17 5.2519 4.2456 -2.4927 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.5115 3.4995 0.8407 34 1 3.6617 3.4381 -0.9319 35 1 6.8363 2.0688 1.4196 36 1 5.2053 1.3805 1.6058 37 1 6.2542 1.5028 5.0730 38 1 8.4396 -2.1578 -3.3349 39 1 6.5000 2.3675 -4.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:18 Heat of formation + Delta-G solvation = 24.173154 kcal Electronic energy + Delta-G solvation = -27708.710859 eV Core-core repulsion = 23679.610937 eV Total energy + Delta-G solvation = -4029.099921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13747 -40.39100 -38.82658 -36.62208 -36.14255 -35.17044 -33.36286 -32.59485 -31.64292 -30.91016 -29.02019 -28.12407 -26.06756 -23.87816 -23.21601 -22.41226 -21.60143 -21.33277 -20.23350 -18.62206 -17.53028 -17.22646 -16.73792 -16.40786 -16.06151 -15.63771 -15.51938 -15.03127 -14.65937 -14.42788 -14.08874 -13.83072 -13.45236 -13.21924 -13.09127 -12.76578 -12.65302 -12.17117 -12.01235 -11.64362 -11.40663 -11.28071 -11.24727 -11.00564 -10.82683 -10.72625 -10.70839 -10.44253 -10.26701 -10.17069 -10.08076 -9.43796 -8.95908 -8.70956 -8.52025 -8.38643 -7.48040 -6.05215 -4.09258 0.97609 1.34528 2.23638 2.71310 2.77002 2.87544 3.09078 3.29641 3.36277 3.40064 3.88912 4.17687 4.31452 4.46377 4.64950 4.96879 5.01899 5.03307 5.12418 5.20434 5.26147 5.30068 5.38033 5.55916 5.73331 5.80434 5.84962 5.95945 5.99209 6.00304 6.07827 6.47523 6.80494 6.90398 7.19990 7.38708 7.65982 7.75969 7.78242 8.01725 8.22038 8.27356 8.40319 8.98601 9.54387 11.04529 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.004957 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.632577 B = 5647.384659 C = 6440.806226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.426 3.574 5 O -0.481 6.481 6 C 0.072 3.928 7 N -0.445 5.445 8 C 0.191 3.809 9 C -0.523 4.523 10 H 0.066 0.934 11 C 0.060 3.940 12 N -0.890 5.890 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.271 1.271 17 C 0.368 3.632 18 N -0.453 5.453 19 C 0.270 3.730 20 N -0.589 5.589 21 H 0.429 0.571 22 C 0.261 3.739 23 N -0.485 5.485 24 C -0.023 4.023 25 C -0.008 4.008 26 C -0.099 4.099 27 Cl -0.045 7.045 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.221 0.779 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 -4.473 -13.544 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.280 6.280 4 C 0.266 3.734 5 O -0.366 6.366 6 C -0.057 4.057 7 N -0.163 5.163 8 C 0.068 3.932 9 C -0.562 4.562 10 H 0.084 0.916 11 C -0.142 4.142 12 N -0.529 5.529 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.196 1.196 17 C 0.125 3.875 18 N -0.170 5.170 19 C 0.032 3.968 20 N -0.204 5.204 21 H 0.269 0.731 22 C -0.027 4.027 23 N -0.205 5.205 24 C -0.143 4.143 25 C -0.036 4.036 26 C -0.132 4.132 27 Cl -0.016 7.016 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.237 0.763 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.828 -4.524 -13.467 14.714 hybrid contribution -0.307 -0.449 1.407 1.509 sum -4.135 -4.973 -12.060 13.685 Atomic orbital electron populations 1.21777 0.93036 1.02497 1.03362 1.22880 0.94958 0.81222 1.02156 1.86515 1.25403 1.31581 1.84537 1.25299 0.80592 0.94612 0.72902 1.90767 1.59418 1.42733 1.43652 1.22150 0.86416 0.90268 1.06862 1.60188 1.05392 1.45645 1.05044 1.19991 0.98040 0.95113 0.80033 1.21203 1.45132 0.99566 0.90274 0.91553 1.24956 0.95186 0.95366 0.98693 1.69994 1.45270 1.19181 1.18434 0.86509 0.78071 0.81606 0.81331 1.20654 1.21278 1.19579 1.19526 0.93154 0.85409 0.89374 1.66934 1.12781 1.03824 1.33470 1.18948 0.97695 0.88396 0.91781 1.42863 1.50362 1.15443 1.11759 0.73142 1.25301 0.98910 0.99626 0.78838 1.70330 1.17036 1.00979 1.32179 1.19356 1.07133 0.96644 0.91173 1.20011 0.94080 0.90575 0.98982 1.20890 1.07542 0.90587 0.94226 1.98334 1.82914 1.24430 1.95940 0.90719 0.91422 0.91714 0.92037 0.91401 0.84455 0.87010 0.94218 0.94660 0.92901 0.76269 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.20 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.36 -6.27 10.22 -39.27 -0.40 -6.67 16 4 C 0.43 8.41 7.18 36.01 0.26 8.67 16 5 O -0.48 -10.77 11.52 -18.75 -0.22 -10.98 16 6 C 0.07 1.34 5.51 -4.97 -0.03 1.32 16 7 N -0.44 -9.64 4.27 -175.81 -0.75 -10.39 16 8 C 0.19 5.02 3.71 -4.98 -0.02 5.00 16 9 C -0.52 -14.26 8.44 -34.44 -0.29 -14.55 16 10 H 0.07 1.74 7.63 -52.49 -0.40 1.34 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 13 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 C 0.37 7.57 4.72 -154.91 -0.73 6.84 16 18 N -0.45 -9.72 7.05 -11.42 -0.08 -9.80 16 19 C 0.27 4.96 8.45 -155.57 -1.31 3.65 16 20 N -0.59 -8.04 6.22 -13.24 -0.08 -8.13 16 21 H 0.43 4.81 8.96 -40.82 -0.37 4.44 16 22 C 0.26 2.97 12.98 -89.64 -1.16 1.80 16 23 N -0.49 -7.28 11.28 -11.96 -0.13 -7.41 16 24 C -0.02 -0.39 7.24 -84.62 -0.61 -1.00 16 25 C -0.01 -0.14 9.94 -39.38 -0.39 -0.53 16 26 C -0.10 -1.72 6.14 -39.56 -0.24 -1.96 16 27 Cl -0.04 -0.66 26.20 -51.86 -1.36 -2.02 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 32 H 0.07 1.06 8.13 -51.93 -0.42 0.63 16 33 H 0.14 2.55 7.21 -51.93 -0.37 2.18 16 34 H 0.11 1.79 5.80 -51.93 -0.30 1.49 16 35 H 0.04 1.16 7.61 -51.93 -0.39 0.76 16 36 H 0.04 1.02 5.85 -51.93 -0.30 0.72 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.22 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -34.90 345.32 -10.36 -45.26 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.23 Total: 3.64 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -4.02 Total: 10.75 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.31 Total: -61.35 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.62 Total: -17.65 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.36 Total: -2.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.90 -10.36 -45.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.428 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds