Wall clock time and date at job start Tue Mar 31 2020 20:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45197 * 109.46856 * 2 1 4 4 C 1.34235 * 116.99831 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99935 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99796 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.47068 * 174.78299 * 6 4 3 8 8 C 1.46893 * 110.99798 * 295.23052 * 7 6 4 9 9 C 1.50705 * 109.46953 * 288.94283 * 8 7 6 10 10 H 1.07999 * 120.00114 * 355.30572 * 9 8 7 11 11 C 1.37879 * 120.00001 * 175.57974 * 9 8 7 12 12 N 1.31519 * 120.00041 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46917 * 90.00308 * 13 11 9 15 15 H 1.48503 * 109.47196 * 209.99789 * 13 11 9 16 16 H 1.48493 * 109.47453 * 330.00303 * 13 11 9 17 17 C 1.39106 * 110.99829 * 59.18210 * 7 6 4 18 18 N 1.32233 * 119.41756 * 250.56498 * 17 7 6 19 19 C 1.32515 * 121.35816 * 179.97438 * 18 17 7 20 20 N 1.37802 * 133.74397 * 179.97438 * 19 18 17 21 21 H 0.97000 * 126.29123 * 0.04949 * 20 19 18 22 22 C 1.36235 * 107.42653 * 180.02562 * 20 19 18 23 23 N 1.30066 * 110.04407 * 359.97438 * 22 20 19 24 24 C 1.35767 * 109.50137 * 0.02562 * 23 22 20 25 25 C 1.40002 * 133.74091 * 180.02562 * 24 23 22 26 26 C 1.36975 * 118.37510 * 179.78364 * 25 24 23 27 27 Cl 1.73601 * 120.19423 * 180.21985 * 26 25 24 28 28 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47452 * 299.99726 * 1 2 3 30 30 H 1.09004 * 109.47292 * 59.99967 * 1 2 3 31 31 H 1.08999 * 109.47604 * 239.99741 * 2 1 3 32 32 H 1.09002 * 109.46808 * 120.00223 * 2 1 3 33 33 H 1.08995 * 109.47310 * 54.77864 * 6 4 3 34 34 H 1.09006 * 109.46827 * 294.77956 * 6 4 3 35 35 H 1.09006 * 109.47447 * 168.94535 * 8 7 6 36 36 H 1.09003 * 109.47375 * 48.94380 * 8 7 6 37 37 H 0.96996 * 120.00259 * 180.02562 * 12 11 9 38 38 H 1.08003 * 124.97447 * 180.02562 * 22 20 19 39 39 H 1.07998 * 120.81254 * 359.97030 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 7 5.3823 2.8628 0.1276 8 6 5.7700 2.2953 1.4258 9 6 5.4745 3.2912 2.5177 10 1 5.1132 4.2773 2.2659 11 6 5.6709 2.9452 3.8379 12 7 6.1165 1.7463 4.1443 13 14 5.3053 4.1798 5.1912 14 1 3.8915 4.0371 5.6226 15 1 6.2032 3.9278 6.3469 16 1 5.5304 5.5557 4.6801 17 6 5.9367 2.1350 -0.9202 18 7 6.4485 0.9393 -0.6811 19 6 6.9858 0.2128 -1.6504 20 7 7.5777 -1.0309 -1.6928 21 1 7.7064 -1.6313 -0.9419 22 6 7.9486 -1.2625 -2.9831 23 7 7.6238 -0.2479 -3.7293 24 6 7.0236 0.7017 -2.9668 25 6 6.4857 1.9651 -3.2401 26 6 5.9373 2.6766 -2.2061 27 17 5.2519 4.2456 -2.4927 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.5115 3.4995 0.8407 34 1 3.6617 3.4381 -0.9319 35 1 6.8363 2.0688 1.4196 36 1 5.2053 1.3805 1.6058 37 1 6.2542 1.5028 5.0730 38 1 8.4396 -2.1578 -3.3349 39 1 6.5000 2.3675 -4.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:17 Heat of formation + Delta-G solvation = 1.966304 kcal Electronic energy + Delta-G solvation = -27709.673820 eV Core-core repulsion = 23679.610937 eV Total energy + Delta-G solvation = -4030.062883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.35472 -41.89639 -40.22445 -38.02895 -37.44333 -36.76847 -34.69536 -34.56567 -32.76030 -32.16974 -30.42890 -29.92289 -27.68209 -25.44734 -24.40607 -23.90106 -23.03353 -22.54580 -21.76661 -19.93034 -18.97975 -18.60360 -18.34267 -18.06822 -17.50141 -17.21293 -16.93071 -16.45175 -16.29053 -15.69460 -15.60436 -15.16574 -14.72559 -14.55943 -14.42191 -14.15537 -14.03178 -13.62640 -13.43150 -13.10381 -12.92635 -12.76950 -12.62657 -12.55584 -12.51224 -12.28166 -12.11118 -11.90919 -11.83179 -11.68932 -11.55720 -11.37407 -10.67743 -10.32196 -10.14373 -9.80215 -8.97519 -8.18908 -6.31472 -0.26409 0.00069 0.95330 1.17314 1.42941 1.44672 1.56293 1.62296 1.66581 1.83263 2.37462 2.53359 2.79692 3.14052 3.23069 3.42742 3.67770 3.80172 3.85326 3.92547 4.06451 4.15282 4.26478 4.26615 4.38854 4.52272 4.76317 4.79014 4.83036 4.88267 5.08736 5.13037 5.18006 5.35280 5.44769 5.60217 5.79368 5.95714 6.22332 6.36535 6.65292 6.72190 6.80775 6.97449 7.37935 8.91769 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.004957 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.632577 B = 5647.384659 C = 6440.806226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 O -0.361 6.361 4 C 0.423 3.577 5 O -0.511 6.511 6 C 0.071 3.929 7 N -0.448 5.448 8 C 0.222 3.778 9 C -0.533 4.533 10 H 0.076 0.924 11 C 0.004 3.996 12 N -0.933 5.933 13 Si 0.971 3.029 14 H -0.270 1.270 15 H -0.287 1.287 16 H -0.258 1.258 17 C 0.337 3.663 18 N -0.492 5.492 19 C 0.234 3.766 20 N -0.586 5.586 21 H 0.438 0.562 22 C 0.297 3.703 23 N -0.512 5.512 24 C -0.022 4.022 25 C -0.006 4.006 26 C -0.099 4.099 27 Cl -0.024 7.024 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.137 0.863 34 H 0.141 0.859 35 H -0.004 1.004 36 H 0.000 1.000 37 H 0.262 0.738 38 H 0.283 0.717 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -4.259 -15.100 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.265 3.735 5 O -0.399 6.399 6 C -0.057 4.057 7 N -0.166 5.166 8 C 0.097 3.903 9 C -0.571 4.571 10 H 0.094 0.906 11 C -0.194 4.194 12 N -0.572 5.572 13 Si 0.795 3.205 14 H -0.196 1.196 15 H -0.213 1.213 16 H -0.182 1.182 17 C 0.095 3.905 18 N -0.209 5.209 19 C -0.005 4.005 20 N -0.202 5.202 21 H 0.280 0.720 22 C 0.010 3.990 23 N -0.232 5.232 24 C -0.142 4.142 25 C -0.034 4.034 26 C -0.133 4.133 27 Cl 0.005 6.995 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.015 0.985 36 H 0.018 0.982 37 H 0.071 0.929 38 H 0.299 0.701 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.549 -4.305 -15.046 16.298 hybrid contribution -0.042 -0.710 1.751 1.890 sum -4.591 -5.016 -13.295 14.933 Atomic orbital electron populations 1.21796 0.89477 1.04419 1.03970 1.23188 0.97659 0.79737 1.01344 1.86508 1.23959 1.33301 1.83958 1.25453 0.81217 0.94622 0.72216 1.90756 1.60300 1.43710 1.45098 1.22278 0.85149 0.90073 1.08200 1.60097 1.06990 1.45982 1.03500 1.19323 0.94687 0.93744 0.82549 1.21568 1.44613 1.00050 0.90890 0.90551 1.25935 0.94798 0.97243 1.01438 1.70158 1.46650 1.21473 1.18957 0.85359 0.78116 0.79315 0.77714 1.19573 1.21300 1.18219 1.19582 0.94765 0.85998 0.90156 1.66723 1.13649 1.04954 1.35560 1.19319 0.99105 0.90065 0.92018 1.43065 1.49776 1.14206 1.13162 0.72042 1.26638 0.95296 0.99902 0.77160 1.70412 1.18714 1.01656 1.32450 1.19679 1.06380 0.97275 0.90897 1.20325 0.93049 0.90172 0.99835 1.20793 1.07754 0.91548 0.93201 1.98329 1.82572 1.22873 1.95716 0.88115 0.91375 0.90478 0.91981 0.93205 0.84489 0.84161 0.98548 0.98223 0.92898 0.70142 0.80437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.29 71.98 0.74 -1.99 16 2 C 0.05 1.60 6.19 71.98 0.45 2.04 16 3 O -0.36 -12.62 10.22 -51.47 -0.53 -13.14 16 4 C 0.42 17.35 7.18 71.24 0.51 17.86 16 5 O -0.51 -24.18 11.52 21.97 0.25 -23.93 16 6 C 0.07 2.73 5.51 85.56 0.47 3.20 16 7 N -0.45 -20.21 4.27 -710.14 -3.03 -23.24 16 8 C 0.22 12.32 3.71 85.56 0.32 12.63 16 9 C -0.53 -29.93 8.44 25.60 0.22 -29.71 16 10 H 0.08 4.03 7.63 -2.91 -0.02 4.01 16 11 C 0.00 0.24 5.46 84.65 0.46 0.71 16 12 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 13 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 C 0.34 14.38 4.72 133.17 0.63 15.01 16 18 N -0.49 -22.21 7.05 -190.04 -1.34 -23.55 16 19 C 0.23 8.74 8.45 133.76 1.13 9.87 16 20 N -0.59 -15.55 6.22 -195.79 -1.22 -16.77 16 21 H 0.44 9.67 8.96 -92.71 -0.83 8.84 16 22 C 0.30 5.87 12.98 180.00 2.34 8.21 16 23 N -0.51 -14.23 11.28 -191.74 -2.16 -16.40 16 24 C -0.02 -0.74 7.24 39.51 0.29 -0.45 16 25 C -0.01 -0.19 9.94 22.40 0.22 0.03 16 26 C -0.10 -3.45 6.14 22.28 0.14 -3.32 16 27 Cl -0.02 -0.68 26.20 -2.72 -0.07 -0.75 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 33 H 0.14 5.20 7.21 -2.39 -0.02 5.18 16 34 H 0.14 4.47 5.80 -2.38 -0.01 4.45 16 35 H 0.00 -0.23 7.61 -2.38 -0.02 -0.25 16 36 H 0.00 -0.01 5.85 -2.39 -0.01 -0.02 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.28 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.18 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -80.88 345.32 2.41 -78.47 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.29 Total: 16.31 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 7.91 Total: 34.09 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -7.47 Total: -136.99 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.27 Total: -37.07 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.07 Total: -0.75 kcal Total: -80.88 2.41 -78.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.435 kcal (2) G-P(sol) polarization free energy of solvation -80.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds