Wall clock time and date at job start Tue Mar 31 2020 20:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34835 * 117.00016 * 2 1 4 4 O 1.21583 * 120.00490 * 359.97438 * 3 2 1 5 5 C 1.46906 * 119.99862 * 179.97438 * 3 2 1 6 6 C 1.38902 * 125.53133 * 179.71638 * 5 3 2 7 7 C 1.40010 * 106.09808 * 179.90902 * 6 5 3 8 8 C 1.40919 * 135.03641 * 180.09828 * 7 6 5 9 9 N 1.36963 * 120.44235 * 0.29475 * 8 7 6 10 10 C 1.46501 * 120.00091 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47001 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47292 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47413 * 180.02562 * 12 11 10 14 14 H 1.08008 * 120.00087 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00168 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99865 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99951 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47151 * 89.99770 * 17 15 13 19 19 H 1.48503 * 109.46958 * 209.99847 * 17 15 13 20 20 H 1.48505 * 109.47165 * 329.99547 * 17 15 13 21 21 N 1.33529 * 119.11947 * 180.27112 * 8 7 6 22 22 C 1.31040 * 121.98147 * 0.02562 * 21 8 7 23 23 Cl 1.73598 * 118.67931 * 180.02562 * 22 21 8 24 24 N 1.34440 * 122.63780 * 359.97438 * 22 21 8 25 25 H 0.97004 * 120.09565 * 180.02562 * 24 22 21 26 26 C 1.38348 * 119.80172 * 0.02562 * 24 22 21 27 27 N 1.31390 * 134.02653 * 180.02562 * 26 24 22 28 28 H 1.08999 * 109.47207 * 300.00403 * 1 2 3 29 29 H 1.09004 * 109.46362 * 60.00115 * 1 2 3 30 30 H 1.08993 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.07999 * 126.95198 * 0.02562 * 6 5 3 32 32 H 0.96995 * 119.99554 * 359.97438 * 9 8 7 33 33 H 1.08998 * 109.46976 * 299.99899 * 10 9 8 34 34 H 1.08998 * 109.47204 * 59.99616 * 10 9 8 35 35 H 1.09003 * 109.47203 * 300.00297 * 11 10 9 36 36 H 1.08998 * 109.47393 * 59.99807 * 11 10 9 37 37 H 1.09003 * 109.47358 * 300.00348 * 12 11 10 38 38 H 1.09006 * 109.46784 * 59.99950 * 12 11 10 39 39 H 0.96994 * 119.99867 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2211 -0.0005 5 6 3.5312 1.2782 0.0006 6 6 4.2782 2.4493 -0.0050 7 6 5.6211 2.0532 0.0001 8 6 6.8592 2.7262 0.0002 9 7 6.9049 4.0951 0.0005 10 6 8.1974 4.7848 0.0000 11 6 7.9681 6.2976 -0.0002 12 6 9.3178 7.0180 0.0000 13 6 9.0921 8.5079 0.0003 14 1 8.0864 8.9017 0.0000 15 6 10.1694 9.3684 0.0000 16 7 11.3940 8.8889 -0.0001 17 14 9.8894 11.2154 -0.0002 18 1 9.8154 11.7050 1.3998 19 1 11.0140 11.8863 -0.7005 20 1 8.6164 11.5230 -0.7003 21 7 7.9872 2.0117 0.0006 22 6 7.9787 0.7013 0.0004 23 17 9.4963 -0.1416 0.0016 24 7 6.8420 -0.0164 0.0002 25 1 6.8787 -0.9858 0.0004 26 6 5.6196 0.6316 -0.0002 27 7 4.3703 0.2246 0.0000 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.8997 3.4608 -0.0100 32 1 6.0815 4.6078 0.0001 33 1 8.7602 4.5024 0.8897 34 1 8.7595 4.5027 -0.8902 35 1 7.4054 6.5796 -0.8902 36 1 7.4058 6.5800 0.8897 37 1 9.8802 6.7358 0.8901 38 1 9.8805 6.7355 -0.8899 39 1 12.1518 9.4943 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:54 Heat of formation + Delta-G solvation = -3.601859 kcal Electronic energy + Delta-G solvation = -25183.072661 eV Core-core repulsion = 21152.768325 eV Total energy + Delta-G solvation = -4030.304336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18490 -40.22377 -38.89489 -38.13757 -37.27041 -36.28473 -34.79688 -33.35798 -31.72196 -30.13814 -29.38947 -27.88265 -26.78600 -25.11766 -23.75970 -22.82942 -22.49496 -20.70991 -20.28651 -18.77937 -18.53393 -17.85194 -17.40811 -16.54501 -16.52376 -16.43938 -16.19822 -15.53348 -15.08368 -15.05912 -14.59775 -14.41777 -13.86792 -13.53511 -13.18919 -13.07028 -12.70568 -12.46144 -12.40522 -12.15526 -11.99253 -11.96182 -11.71667 -11.04195 -10.98350 -10.82080 -10.80033 -10.68422 -10.61552 -10.07780 -9.83166 -9.62588 -9.60945 -9.26291 -8.63495 -8.47319 -7.83032 -6.12212 -4.15647 -0.24295 0.22239 1.25920 1.88781 2.11729 2.64071 2.78498 3.20705 3.25128 3.32108 3.34839 3.56229 3.84028 4.23665 4.36554 4.43356 4.72759 5.00757 5.02026 5.07828 5.24143 5.30595 5.37672 5.43753 5.57477 5.69301 5.83132 5.99513 6.23362 6.31514 6.35171 6.37646 6.51437 6.69569 6.75165 6.84221 7.33967 7.48619 7.58474 7.58570 7.85045 8.02070 8.25232 8.90403 9.49484 10.98869 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.002468 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.150846 B =11341.537076 C =14041.636069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.345 6.345 3 C 0.551 3.449 4 O -0.516 6.516 5 C -0.014 4.014 6 C -0.096 4.096 7 C -0.288 4.288 8 C 0.545 3.455 9 N -0.647 5.647 10 C 0.104 3.896 11 C -0.126 4.126 12 C 0.027 3.973 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.559 5.559 22 C 0.484 3.516 23 Cl 0.059 6.941 24 N -0.543 5.543 25 H 0.427 0.573 26 C 0.247 3.753 27 N -0.467 5.467 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.146 0.854 32 H 0.424 0.576 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.021 0.979 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 -22.263 -0.006 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.261 6.261 3 C 0.397 3.603 4 O -0.405 6.405 5 C -0.140 4.140 6 C -0.122 4.122 7 C -0.302 4.302 8 C 0.299 3.701 9 N -0.264 5.264 10 C -0.018 4.018 11 C -0.164 4.164 12 C -0.011 4.011 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.531 5.531 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.293 5.293 22 C 0.190 3.810 23 Cl 0.087 6.913 24 N -0.159 5.159 25 H 0.266 0.734 26 C 0.000 4.000 27 N -0.186 5.186 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.164 0.836 32 H 0.263 0.737 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.908 -22.201 -0.011 23.921 hybrid contribution -0.736 1.165 0.008 1.378 sum -9.644 -21.035 -0.003 23.141 Atomic orbital electron populations 1.23240 0.76901 1.03399 1.02368 1.86699 1.22596 1.32569 1.84202 1.19928 0.87123 0.81199 0.72042 1.90854 1.65990 1.36092 1.47554 1.19225 0.89004 0.89865 1.15868 1.21338 0.89397 0.98453 1.02992 1.18918 0.93258 0.93603 1.24446 1.18189 0.86871 0.85374 0.79710 1.45305 1.12699 1.01807 1.66635 1.22176 0.82065 0.93975 1.03535 1.21983 1.02897 0.90049 1.01485 1.19010 0.89647 0.94649 0.97792 1.21165 0.92690 0.91164 1.51332 0.92584 1.25017 0.95191 0.99064 0.95094 1.69949 0.97894 1.34999 1.50303 0.86571 0.77864 0.85259 0.78182 1.20594 1.21152 1.19845 1.67331 1.28309 1.02381 1.31258 1.22424 0.82947 0.87274 0.88376 1.98549 1.23150 1.74091 1.95554 1.41595 1.02561 1.11883 1.59867 0.73398 1.18094 0.85704 0.87342 1.08886 1.69391 0.96626 1.31873 1.20756 0.92056 0.92049 0.88296 0.83620 0.73708 0.90063 0.90073 0.92276 0.92281 0.96120 0.96113 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.39 16 2 O -0.34 -4.74 10.57 -40.86 -0.43 -5.17 16 3 C 0.55 8.53 7.94 34.24 0.27 8.80 16 4 O -0.52 -8.65 16.65 -19.33 -0.32 -8.97 16 5 C -0.01 -0.22 6.99 -82.86 -0.58 -0.80 16 6 C -0.10 -1.35 10.53 -38.67 -0.41 -1.75 16 7 C -0.29 -3.84 6.15 -106.71 -0.66 -4.49 16 8 C 0.55 6.73 7.53 -155.32 -1.17 5.57 16 9 N -0.65 -7.70 5.63 -60.20 -0.34 -8.04 16 10 C 0.10 1.45 5.68 -4.04 -0.02 1.42 16 11 C -0.13 -2.15 5.27 -26.73 -0.14 -2.29 16 12 C 0.03 0.62 4.97 -27.89 -0.14 0.48 16 13 C -0.53 -13.90 9.11 -34.44 -0.31 -14.21 16 14 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 17 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 N -0.56 -6.44 9.52 -10.42 -0.10 -6.54 16 22 C 0.48 4.35 8.23 -90.47 -0.74 3.60 16 23 Cl 0.06 0.37 29.18 -51.86 -1.51 -1.14 16 24 N -0.54 -4.80 5.38 -10.27 -0.06 -4.85 16 25 H 0.43 2.38 8.84 -40.82 -0.36 2.02 16 26 C 0.25 3.20 8.49 -155.34 -1.32 1.89 16 27 N -0.47 -7.05 11.21 -8.64 -0.10 -7.15 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.42 4.42 8.29 -40.82 -0.34 4.08 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -33.58 363.69 -10.38 -43.96 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.47 Total: 0.36 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.25 Total: 1.10 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.15 Total: -51.41 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.75 Total: -14.14 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.51 Total: -1.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.58 -10.38 -43.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.357 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds