Wall clock time and date at job start Tue Mar 31 2020 20:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34835 * 117.00016 * 2 1 4 4 O 1.21583 * 120.00490 * 359.97438 * 3 2 1 5 5 C 1.46906 * 119.99862 * 179.97438 * 3 2 1 6 6 C 1.38902 * 125.53133 * 179.71638 * 5 3 2 7 7 C 1.40010 * 106.09808 * 179.90902 * 6 5 3 8 8 C 1.40919 * 135.03641 * 180.09828 * 7 6 5 9 9 N 1.36963 * 120.44235 * 0.29475 * 8 7 6 10 10 C 1.46501 * 120.00091 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47001 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47292 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47413 * 180.02562 * 12 11 10 14 14 H 1.08008 * 120.00087 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00168 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99865 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99951 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47151 * 89.99770 * 17 15 13 19 19 H 1.48503 * 109.46958 * 209.99847 * 17 15 13 20 20 H 1.48505 * 109.47165 * 329.99547 * 17 15 13 21 21 N 1.33529 * 119.11947 * 180.27112 * 8 7 6 22 22 C 1.31040 * 121.98147 * 0.02562 * 21 8 7 23 23 Cl 1.73598 * 118.67931 * 180.02562 * 22 21 8 24 24 N 1.34440 * 122.63780 * 359.97438 * 22 21 8 25 25 H 0.97004 * 120.09565 * 180.02562 * 24 22 21 26 26 C 1.38348 * 119.80172 * 0.02562 * 24 22 21 27 27 N 1.31390 * 134.02653 * 180.02562 * 26 24 22 28 28 H 1.08999 * 109.47207 * 300.00403 * 1 2 3 29 29 H 1.09004 * 109.46362 * 60.00115 * 1 2 3 30 30 H 1.08993 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.07999 * 126.95198 * 0.02562 * 6 5 3 32 32 H 0.96995 * 119.99554 * 359.97438 * 9 8 7 33 33 H 1.08998 * 109.46976 * 299.99899 * 10 9 8 34 34 H 1.08998 * 109.47204 * 59.99616 * 10 9 8 35 35 H 1.09003 * 109.47203 * 300.00297 * 11 10 9 36 36 H 1.08998 * 109.47393 * 59.99807 * 11 10 9 37 37 H 1.09003 * 109.47358 * 300.00348 * 12 11 10 38 38 H 1.09006 * 109.46784 * 59.99950 * 12 11 10 39 39 H 0.96994 * 119.99867 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2211 -0.0005 5 6 3.5312 1.2782 0.0006 6 6 4.2782 2.4493 -0.0050 7 6 5.6211 2.0532 0.0001 8 6 6.8592 2.7262 0.0002 9 7 6.9049 4.0951 0.0005 10 6 8.1974 4.7848 0.0000 11 6 7.9681 6.2976 -0.0002 12 6 9.3178 7.0180 0.0000 13 6 9.0921 8.5079 0.0003 14 1 8.0864 8.9017 0.0000 15 6 10.1694 9.3684 0.0000 16 7 11.3940 8.8889 -0.0001 17 14 9.8894 11.2154 -0.0002 18 1 9.8154 11.7050 1.3998 19 1 11.0140 11.8863 -0.7005 20 1 8.6164 11.5230 -0.7003 21 7 7.9872 2.0117 0.0006 22 6 7.9787 0.7013 0.0004 23 17 9.4963 -0.1416 0.0016 24 7 6.8420 -0.0164 0.0002 25 1 6.8787 -0.9858 0.0004 26 6 5.6196 0.6316 -0.0002 27 7 4.3703 0.2246 0.0000 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.8997 3.4608 -0.0100 32 1 6.0815 4.6078 0.0001 33 1 8.7602 4.5024 0.8897 34 1 8.7595 4.5027 -0.8902 35 1 7.4054 6.5796 -0.8902 36 1 7.4058 6.5800 0.8897 37 1 9.8802 6.7358 0.8901 38 1 9.8805 6.7355 -0.8899 39 1 12.1518 9.4943 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:53 Heat of formation + Delta-G solvation = -23.866556 kcal Electronic energy + Delta-G solvation = -25183.951405 eV Core-core repulsion = 21152.768325 eV Total energy + Delta-G solvation = -4031.183079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12872 -41.27965 -39.84146 -39.04724 -38.07858 -37.37133 -36.16574 -34.82827 -33.20847 -31.32971 -30.39978 -28.90917 -28.20086 -26.09553 -25.21808 -23.84440 -23.60216 -22.22774 -21.27945 -19.72975 -19.53434 -18.83243 -18.47143 -18.35518 -17.54768 -17.48576 -17.16769 -16.54550 -16.43234 -16.29123 -16.08814 -15.48113 -14.79164 -14.48538 -14.40850 -14.31580 -14.03420 -13.84952 -13.57959 -13.12929 -13.01905 -12.95813 -12.71097 -12.65075 -12.59753 -12.40516 -11.88890 -11.76725 -11.71210 -11.66007 -11.46330 -11.20810 -10.83229 -10.61879 -10.53323 -9.67895 -8.86110 -8.19159 -6.28792 -1.12863 -0.51498 0.32305 0.79357 1.28663 1.42290 1.42946 1.53149 1.68576 1.84689 2.23516 2.42176 2.47151 2.94619 3.15395 3.24767 3.48322 3.77159 3.98535 4.15999 4.19894 4.32311 4.35109 4.52982 4.59792 4.62313 4.74518 4.92766 4.96034 5.15671 5.23446 5.29114 5.38308 5.48482 5.53641 5.68704 5.73227 5.84777 5.86668 6.24648 6.42679 6.54904 6.88354 6.95269 7.40437 8.92189 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.002468 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.150846 B =11341.537076 C =14041.636069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.550 3.450 4 O -0.540 6.540 5 C -0.046 4.046 6 C -0.097 4.097 7 C -0.299 4.299 8 C 0.552 3.448 9 N -0.641 5.641 10 C 0.123 3.877 11 C -0.111 4.111 12 C 0.027 3.973 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.265 1.265 21 N -0.578 5.578 22 C 0.497 3.503 23 Cl 0.093 6.907 24 N -0.529 5.529 25 H 0.443 0.557 26 C 0.246 3.754 27 N -0.486 5.486 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.132 0.868 31 H 0.156 0.844 32 H 0.431 0.569 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.000 1.000 38 H 0.000 1.000 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 -22.948 -0.003 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.397 3.603 4 O -0.431 6.431 5 C -0.171 4.171 6 C -0.124 4.124 7 C -0.312 4.312 8 C 0.304 3.696 9 N -0.259 5.259 10 C 0.000 4.000 11 C -0.149 4.149 12 C -0.010 4.010 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.784 3.216 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.189 1.189 21 N -0.312 5.312 22 C 0.203 3.797 23 Cl 0.121 6.879 24 N -0.147 5.147 25 H 0.286 0.714 26 C -0.002 4.002 27 N -0.206 5.206 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.173 0.827 32 H 0.272 0.728 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.097 -22.950 -0.008 24.688 hybrid contribution -0.584 1.256 0.008 1.385 sum -9.681 -21.695 0.000 23.757 Atomic orbital electron populations 1.23585 0.74652 1.05724 1.02612 1.86676 1.24909 1.31754 1.83761 1.20034 0.87332 0.81366 0.71558 1.90820 1.66498 1.36764 1.49006 1.19439 0.89329 0.90628 1.17716 1.21535 0.89786 0.98683 1.02356 1.18954 0.93235 0.94017 1.25020 1.18146 0.86850 0.85332 0.79249 1.45061 1.12243 1.01815 1.66824 1.21766 0.82798 0.91887 1.03513 1.21679 0.99401 0.91671 1.02155 1.18896 0.92442 0.93999 0.95710 1.21675 0.92882 0.93036 1.50382 0.92086 1.25895 0.95045 1.03775 0.94970 1.70068 0.98717 1.36539 1.51632 0.85543 0.77955 0.79771 0.78351 1.20011 1.21039 1.18892 1.67410 1.27913 1.03530 1.32319 1.22707 0.83883 0.86898 0.86226 1.98574 1.20972 1.73246 1.95138 1.41507 1.01321 1.12726 1.59130 0.71418 1.18214 0.86183 0.87684 1.08106 1.69337 0.97411 1.32069 1.21771 0.91835 0.91829 0.84957 0.82662 0.72829 0.90162 0.90172 0.91604 0.91594 0.98197 0.98189 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.36 -9.74 10.57 -57.48 -0.61 -10.35 16 3 C 0.55 17.28 7.94 70.09 0.56 17.84 16 4 O -0.54 -18.40 16.65 19.57 0.33 -18.08 16 5 C -0.05 -1.45 6.99 41.13 0.29 -1.16 16 6 C -0.10 -2.72 10.53 22.86 0.24 -2.48 16 7 C -0.30 -7.67 6.15 -21.22 -0.13 -7.80 16 8 C 0.55 12.84 7.53 133.85 1.01 13.84 16 9 N -0.64 -14.30 5.63 -344.37 -1.94 -16.24 16 10 C 0.12 3.26 5.68 86.38 0.49 3.75 16 11 C -0.11 -3.69 5.27 30.59 0.16 -3.52 16 12 C 0.03 1.27 4.97 29.84 0.15 1.42 16 13 C -0.54 -28.61 9.11 25.60 0.23 -28.38 16 14 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -53.86 13.29 21.45 0.28 -53.57 16 17 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 N -0.58 -12.25 9.52 -186.89 -1.78 -14.03 16 22 C 0.50 7.87 8.23 180.30 1.48 9.35 16 23 Cl 0.09 0.94 29.18 -2.72 -0.08 0.86 16 24 N -0.53 -8.38 5.38 -186.41 -1.00 -9.38 16 25 H 0.44 3.99 8.84 -92.71 -0.82 3.17 16 26 C 0.25 6.14 8.49 134.34 1.14 7.28 16 27 N -0.49 -14.53 11.21 -181.24 -2.03 -16.56 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.43 8.35 8.29 -92.71 -0.77 7.58 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 39 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -72.70 363.69 2.02 -70.68 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -0.46 Total: 9.79 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 7.28 Total: 12.36 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -6.47 Total: -109.79 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.28 Total: -28.42 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Total: -72.70 2.02 -70.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.818 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds