Wall clock time and date at job start Tue Mar 31 2020 20:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34831 * 116.99837 * 2 1 4 4 O 1.21595 * 120.00016 * 0.02562 * 3 2 1 5 5 C 1.46813 * 119.99955 * 180.02562 * 3 2 1 6 6 C 1.36486 * 126.86088 * 354.52841 * 5 3 2 7 7 N 1.35695 * 109.64662 * 179.97438 * 6 5 3 8 8 H 0.97001 * 124.70865 * 179.97438 * 7 6 5 9 9 C 1.37099 * 110.56909 * 0.02562 * 7 6 5 10 10 N 1.33199 * 134.05109 * 180.02562 * 9 7 6 11 11 C 1.31564 * 120.72022 * 179.97438 * 10 9 7 12 12 N 1.32033 * 122.67759 * 359.97438 * 11 10 9 13 13 C 1.33031 * 120.94638 * 359.97438 * 12 11 10 14 14 N 1.38590 * 120.82159 * 180.02562 * 13 12 11 15 15 C 1.38426 * 120.00515 * 5.70477 * 14 13 12 16 16 C 1.38954 * 120.00333 * 301.26661 * 15 14 13 17 17 H 1.08000 * 120.00362 * 157.49368 * 16 15 14 18 18 C 1.40860 * 119.99872 * 337.50438 * 16 15 14 19 19 N 1.30326 * 120.00115 * 356.68555 * 18 16 15 20 20 Si 1.86803 * 120.00207 * 176.68832 * 18 16 15 21 21 H 1.48498 * 109.47126 * 89.99468 * 20 18 16 22 22 H 1.48501 * 109.47000 * 209.99619 * 20 18 16 23 23 H 1.48502 * 109.46708 * 329.99781 * 20 18 16 24 24 C 1.41141 * 120.00336 * 121.26655 * 15 14 13 25 25 C 1.43195 * 120.00145 * 185.23310 * 24 15 14 26 26 N 8.82187 * 90.08394 * 345.28599 * 2 1 3 27 27 C 1.43199 * 119.99363 * 5.23534 * 24 15 14 28 28 N 5.33069 * 81.07978 * 323.83438 * 2 1 3 29 29 C 1.39977 * 118.34665 * 0.02562 * 13 12 11 30 30 H 1.09001 * 109.47327 * 299.99715 * 1 2 3 31 31 H 1.09003 * 109.47353 * 59.99971 * 1 2 3 32 32 H 1.09008 * 109.47197 * 179.97438 * 1 2 3 33 33 H 1.08003 * 125.17453 * 359.96527 * 6 5 3 34 34 H 1.08001 * 118.66162 * 179.97438 * 11 10 9 35 35 H 0.97008 * 119.99649 * 185.70776 * 14 13 12 36 36 H 0.96997 * 120.00162 * 185.03728 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4018 2.2211 0.0005 5 6 3.5302 1.2782 -0.0006 6 6 4.4048 0.2355 0.1030 7 7 5.6783 0.7026 0.0637 8 1 6.4720 0.1479 0.1206 9 6 5.6870 2.0673 -0.0663 10 7 6.6502 2.9835 -0.1501 11 6 6.3550 4.2597 -0.2734 12 7 5.1121 4.7025 -0.3211 13 6 4.0833 3.8625 -0.2459 14 7 2.7796 4.3301 -0.2969 15 6 2.5338 5.6694 -0.5457 16 6 3.0545 6.6404 0.3010 17 1 3.1884 7.6514 -0.0544 18 6 3.4080 6.3060 1.6229 19 7 3.1869 5.1027 2.0721 20 14 4.1936 7.5872 2.7323 21 1 3.1333 8.3239 3.4659 22 1 5.0929 6.9155 3.7046 23 1 4.9792 8.5406 1.9082 24 6 1.7542 6.0489 -1.6593 25 6 1.5928 7.4348 -1.9815 26 7 1.4650 8.5326 -2.2407 27 6 1.1247 5.0479 -2.4670 28 7 0.6255 4.2515 -3.1077 29 6 4.3502 2.4947 -0.1141 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.1257 -0.8032 0.2014 34 1 7.1623 4.9742 -0.3381 35 1 2.0393 3.7187 -0.1582 36 1 3.3622 4.8925 3.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158213018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:26 Heat of formation + Delta-G solvation = 78.223890 kcal Electronic energy + Delta-G solvation = -28873.200680 eV Core-core repulsion = 24745.337080 eV Total energy + Delta-G solvation = -4127.863599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72221 -39.96337 -38.67280 -37.17956 -36.29515 -35.16278 -34.55852 -33.73006 -32.27167 -31.10319 -30.42910 -28.68255 -27.44888 -26.96802 -23.70944 -23.60702 -22.98866 -21.24519 -19.92250 -19.25330 -18.82650 -17.40416 -17.16117 -16.72602 -16.32162 -16.28809 -16.10927 -15.61164 -15.41332 -15.08129 -14.05485 -13.98543 -13.69889 -13.47444 -13.20002 -13.10004 -12.83554 -12.62511 -12.46139 -12.14245 -12.04540 -11.68509 -11.59008 -11.47752 -11.39697 -11.08144 -10.87561 -10.78323 -10.74780 -10.49509 -10.32277 -10.28871 -9.91904 -9.00948 -8.93933 -8.58586 -7.99486 -7.60123 -6.85801 -5.24862 1.09623 1.66116 2.02668 2.48994 2.60211 2.79725 2.84080 2.86733 2.99791 3.25259 3.51677 3.90691 4.03238 4.19396 4.43074 4.45066 4.57520 4.61641 4.66118 4.80547 5.14259 5.16189 5.22082 5.26249 5.34631 5.49784 5.55176 5.66579 5.79114 6.15131 6.31805 6.35367 6.40501 6.55306 6.87523 7.10351 7.23179 7.44226 7.62304 7.77668 7.88296 7.99425 8.45234 8.64423 9.10225 9.15233 9.27945 9.37549 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.006015 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.995476 B = 4654.187179 C = 6056.271867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.541 3.459 4 O -0.494 6.494 5 C -0.180 4.180 6 C 0.116 3.884 7 N -0.558 5.558 8 H 0.424 0.576 9 C 0.339 3.661 10 N -0.592 5.592 11 C 0.360 3.640 12 N -0.567 5.567 13 C 0.532 3.468 14 N -0.603 5.603 15 C 0.373 3.627 16 C -0.343 4.343 17 H 0.110 0.890 18 C 0.079 3.921 19 N -0.731 5.731 20 Si 0.930 3.070 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.246 1.246 24 C -0.316 4.316 25 C 0.330 3.670 26 N -0.538 5.538 27 C 0.310 3.690 28 N -0.538 5.538 29 C -0.225 4.225 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.192 0.808 34 H 0.194 0.806 35 H 0.425 0.575 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.194 -13.941 6.755 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.388 3.612 4 O -0.381 6.381 5 C -0.191 4.191 6 C -0.016 4.016 7 N -0.163 5.163 8 H 0.262 0.738 9 C 0.102 3.898 10 N -0.320 5.320 11 C 0.068 3.932 12 N -0.293 5.293 13 C 0.282 3.718 14 N -0.243 5.243 15 C 0.269 3.731 16 C -0.371 4.371 17 H 0.128 0.872 18 C -0.151 4.151 19 N -0.350 5.350 20 Si 0.751 3.249 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.169 1.169 24 C -0.335 4.335 25 C 0.022 3.978 26 N -0.221 5.221 27 C 0.003 3.997 28 N -0.221 5.221 29 C -0.238 4.238 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.209 0.791 34 H 0.210 0.790 35 H 0.283 0.717 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.709 -12.789 5.479 15.039 hybrid contribution -0.136 -0.791 1.205 1.448 sum 5.573 -13.580 6.684 16.129 Atomic orbital electron populations 1.23291 0.75815 1.03434 1.03191 1.86515 1.23727 1.32115 1.84908 1.20033 0.87621 0.81380 0.72189 1.90183 1.65772 1.35101 1.47050 1.18753 0.88662 0.92954 1.18733 1.22084 0.81693 0.98884 0.98977 1.41184 1.08243 1.04791 1.62111 0.73806 1.18010 0.89480 0.84859 0.97450 1.67373 1.35233 1.01816 1.27558 1.24385 0.92529 0.88181 0.88112 1.68373 0.98744 1.36883 1.25334 1.17630 0.86560 0.85157 0.82445 1.42926 1.04751 1.09504 1.67130 1.16835 0.87307 0.81977 0.86982 1.20168 1.25778 0.97602 0.93506 0.87243 1.26512 0.92073 0.96633 0.99851 1.69541 1.27861 1.19917 1.17689 0.85890 0.79889 0.80163 0.78931 1.18496 1.19480 1.16918 1.12815 1.29519 0.81692 1.09464 1.24585 0.90642 0.91341 0.91193 1.81002 1.16374 1.12008 1.12699 1.25238 0.90886 0.92280 0.91264 1.81069 1.16897 1.10555 1.13539 1.19287 0.93819 0.92703 1.18006 0.91642 0.91461 0.88206 0.79117 0.78989 0.71726 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.36 -4.64 10.41 -40.85 -0.43 -5.07 16 3 C 0.54 8.93 7.93 34.20 0.27 9.21 16 4 O -0.49 -9.83 12.71 -19.34 -0.25 -10.07 16 5 C -0.18 -2.83 6.27 -103.45 -0.65 -3.48 16 6 C 0.12 1.25 11.65 -16.48 -0.19 1.06 16 7 N -0.56 -6.19 5.95 -11.96 -0.07 -6.26 16 8 H 0.42 3.08 8.96 -40.82 -0.37 2.72 16 9 C 0.34 5.44 8.46 -155.67 -1.32 4.12 16 10 N -0.59 -9.77 10.47 -13.90 -0.15 -9.91 16 11 C 0.36 6.10 12.23 -92.15 -1.13 4.97 16 12 N -0.57 -11.40 8.44 -13.69 -0.12 -11.52 16 13 C 0.53 11.18 5.85 -154.56 -0.90 10.27 16 14 N -0.60 -13.58 3.36 -9.52 -0.03 -13.61 16 15 C 0.37 8.73 5.62 -83.52 -0.47 8.26 16 16 C -0.34 -7.66 7.64 -38.32 -0.29 -7.96 16 17 H 0.11 2.46 7.02 -52.49 -0.37 2.09 16 18 C 0.08 1.63 4.73 -17.20 -0.08 1.55 16 19 N -0.73 -15.26 10.69 55.60 0.59 -14.67 16 20 Si 0.93 15.95 29.57 -169.99 -5.03 10.92 16 21 H -0.26 -4.46 7.11 56.52 0.40 -4.05 16 22 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 23 H -0.25 -4.25 7.11 56.52 0.40 -3.85 16 24 C -0.32 -7.65 5.88 -104.95 -0.62 -8.27 16 25 C 0.33 8.08 13.91 -22.50 -0.31 7.77 16 26 N -0.54 -13.43 18.53 41.80 0.77 -12.66 16 27 C 0.31 7.72 14.79 -22.42 -0.33 7.39 16 28 N -0.54 -13.64 18.55 41.90 0.78 -12.86 16 29 C -0.22 -4.17 6.30 -104.81 -0.66 -4.83 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.19 1.17 8.06 -52.48 -0.42 0.74 16 34 H 0.19 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.42 9.76 4.01 -44.62 -0.18 9.58 16 36 H 0.30 5.69 8.29 -40.82 -0.34 5.35 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -31.03 340.66 -6.56 -37.59 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -2.16 Total: 11.47 kcal Atomic # 6 Polarization: 37.13 SS G_CDS: -5.62 Total: 31.52 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: 1.78 Total: -81.49 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.67 Total: -15.14 kcal Atomic # 14 Polarization: 15.95 SS G_CDS: -5.03 Total: 10.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.03 -6.56 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.815 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds