Wall clock time and date at job start Tue Mar 31 2020 20:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34831 * 116.99837 * 2 1 4 4 O 1.21595 * 120.00016 * 0.02562 * 3 2 1 5 5 C 1.46813 * 119.99955 * 180.02562 * 3 2 1 6 6 C 1.36486 * 126.86088 * 354.52841 * 5 3 2 7 7 N 1.35695 * 109.64662 * 179.97438 * 6 5 3 8 8 H 0.97001 * 124.70865 * 179.97438 * 7 6 5 9 9 C 1.37099 * 110.56909 * 0.02562 * 7 6 5 10 10 N 1.33199 * 134.05109 * 180.02562 * 9 7 6 11 11 C 1.31564 * 120.72022 * 179.97438 * 10 9 7 12 12 N 1.32033 * 122.67759 * 359.97438 * 11 10 9 13 13 C 1.33031 * 120.94638 * 359.97438 * 12 11 10 14 14 N 1.38590 * 120.82159 * 180.02562 * 13 12 11 15 15 C 1.38426 * 120.00515 * 5.70477 * 14 13 12 16 16 C 1.38954 * 120.00333 * 301.26661 * 15 14 13 17 17 H 1.08000 * 120.00362 * 157.49368 * 16 15 14 18 18 C 1.40860 * 119.99872 * 337.50438 * 16 15 14 19 19 N 1.30326 * 120.00115 * 356.68555 * 18 16 15 20 20 Si 1.86803 * 120.00207 * 176.68832 * 18 16 15 21 21 H 1.48498 * 109.47126 * 89.99468 * 20 18 16 22 22 H 1.48501 * 109.47000 * 209.99619 * 20 18 16 23 23 H 1.48502 * 109.46708 * 329.99781 * 20 18 16 24 24 C 1.41141 * 120.00336 * 121.26655 * 15 14 13 25 25 C 1.43195 * 120.00145 * 185.23310 * 24 15 14 26 26 N 8.82187 * 90.08394 * 345.28599 * 2 1 3 27 27 C 1.43199 * 119.99363 * 5.23534 * 24 15 14 28 28 N 5.33069 * 81.07978 * 323.83438 * 2 1 3 29 29 C 1.39977 * 118.34665 * 0.02562 * 13 12 11 30 30 H 1.09001 * 109.47327 * 299.99715 * 1 2 3 31 31 H 1.09003 * 109.47353 * 59.99971 * 1 2 3 32 32 H 1.09008 * 109.47197 * 179.97438 * 1 2 3 33 33 H 1.08003 * 125.17453 * 359.96527 * 6 5 3 34 34 H 1.08001 * 118.66162 * 179.97438 * 11 10 9 35 35 H 0.97008 * 119.99649 * 185.70776 * 14 13 12 36 36 H 0.96997 * 120.00162 * 185.03728 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4018 2.2211 0.0005 5 6 3.5302 1.2782 -0.0006 6 6 4.4048 0.2355 0.1030 7 7 5.6783 0.7026 0.0637 8 1 6.4720 0.1479 0.1206 9 6 5.6870 2.0673 -0.0663 10 7 6.6502 2.9835 -0.1501 11 6 6.3550 4.2597 -0.2734 12 7 5.1121 4.7025 -0.3211 13 6 4.0833 3.8625 -0.2459 14 7 2.7796 4.3301 -0.2969 15 6 2.5338 5.6694 -0.5457 16 6 3.0545 6.6404 0.3010 17 1 3.1884 7.6514 -0.0544 18 6 3.4080 6.3060 1.6229 19 7 3.1869 5.1027 2.0721 20 14 4.1936 7.5872 2.7323 21 1 3.1333 8.3239 3.4659 22 1 5.0929 6.9155 3.7046 23 1 4.9792 8.5406 1.9082 24 6 1.7542 6.0489 -1.6593 25 6 1.5928 7.4348 -1.9815 26 7 1.4650 8.5326 -2.2407 27 6 1.1247 5.0479 -2.4670 28 7 0.6255 4.2515 -3.1077 29 6 4.3502 2.4947 -0.1141 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.1257 -0.8032 0.2014 34 1 7.1623 4.9742 -0.3381 35 1 2.0393 3.7187 -0.1582 36 1 3.3622 4.8925 3.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158213018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:25 Heat of formation + Delta-G solvation = 60.343308 kcal Electronic energy + Delta-G solvation = -28873.976040 eV Core-core repulsion = 24745.337080 eV Total energy + Delta-G solvation = -4128.638960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.91708 -41.12378 -40.01934 -38.68208 -37.52020 -36.97026 -36.50337 -35.28318 -33.75359 -32.32897 -31.87118 -30.04489 -28.74063 -28.41169 -25.05724 -24.79060 -24.20343 -22.84521 -21.15711 -20.70123 -20.27929 -19.00530 -18.46860 -18.03044 -17.84297 -17.42946 -17.34096 -17.01697 -16.61265 -16.28761 -15.49956 -15.26851 -15.14006 -14.65541 -14.50904 -14.43666 -14.33567 -14.10832 -14.01079 -13.84564 -13.41865 -13.37256 -13.26595 -13.06575 -12.97078 -12.75006 -12.66628 -12.31110 -11.96425 -11.80561 -11.73107 -11.60843 -11.41748 -10.40128 -10.18706 -9.96809 -9.57514 -9.12172 -8.34588 -7.06764 -0.07188 0.34960 0.58161 1.05796 1.37023 1.51828 1.55116 1.58884 1.79213 2.05213 2.09724 2.10751 2.21086 2.31658 2.62734 2.78022 3.19133 3.41748 3.49731 3.54605 3.77534 3.82529 4.01573 4.08666 4.36278 4.36714 4.42284 4.51842 4.66052 4.71984 4.75051 4.97853 5.15824 5.25262 5.46407 5.61279 5.82919 5.98845 6.13234 6.25934 6.49509 6.63489 6.81450 7.19986 7.22763 7.34369 7.69454 7.79200 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.006015 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.995476 B = 4654.187179 C = 6056.271867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.342 6.342 3 C 0.539 3.461 4 O -0.539 6.539 5 C -0.235 4.235 6 C 0.181 3.819 7 N -0.534 5.534 8 H 0.447 0.553 9 C 0.328 3.672 10 N -0.581 5.581 11 C 0.345 3.655 12 N -0.591 5.591 13 C 0.505 3.495 14 N -0.616 5.616 15 C 0.360 3.640 16 C -0.340 4.340 17 H 0.103 0.897 18 C 0.052 3.948 19 N -0.736 5.736 20 Si 0.988 3.012 21 H -0.257 1.257 22 H -0.259 1.259 23 H -0.248 1.248 24 C -0.337 4.337 25 C 0.334 3.666 26 N -0.555 5.555 27 C 0.312 3.688 28 N -0.558 5.558 29 C -0.250 4.250 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.145 0.855 33 H 0.252 0.748 34 H 0.225 0.775 35 H 0.419 0.581 36 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.253 -16.536 8.502 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.258 6.258 3 C 0.388 3.612 4 O -0.430 6.430 5 C -0.245 4.245 6 C 0.047 3.953 7 N -0.142 5.142 8 H 0.290 0.710 9 C 0.090 3.910 10 N -0.308 5.308 11 C 0.054 3.946 12 N -0.318 5.318 13 C 0.257 3.743 14 N -0.258 5.258 15 C 0.255 3.745 16 C -0.367 4.367 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.354 5.354 20 Si 0.806 3.194 21 H -0.181 1.181 22 H -0.183 1.183 23 H -0.171 1.171 24 C -0.357 4.357 25 C 0.028 3.972 26 N -0.238 5.238 27 C 0.007 3.993 28 N -0.242 5.242 29 C -0.263 4.263 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.268 0.732 34 H 0.241 0.759 35 H 0.277 0.723 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.833 -15.462 7.219 18.777 hybrid contribution -0.659 -0.214 0.769 1.035 sum 7.174 -15.676 7.988 19.000 Atomic orbital electron populations 1.23555 0.74586 1.05936 1.02099 1.86499 1.24814 1.30171 1.84294 1.20299 0.88120 0.81554 0.71217 1.90148 1.66727 1.36614 1.49561 1.18849 0.88911 0.93424 1.23327 1.22960 0.80142 1.00006 0.92174 1.41234 1.09563 1.03025 1.60339 0.70969 1.18268 0.88525 0.86728 0.97501 1.67463 1.35052 1.01804 1.26504 1.25020 0.92338 0.89148 0.88074 1.68314 0.99666 1.37934 1.25897 1.17928 0.86103 0.86579 0.83708 1.42912 1.05484 1.08697 1.68688 1.16959 0.87532 0.83174 0.86828 1.20345 1.25013 0.97053 0.94277 0.87873 1.27180 0.92170 0.98324 1.00077 1.69576 1.26581 1.20927 1.18356 0.85048 0.79142 0.77886 0.77283 1.18089 1.18290 1.17116 1.12967 1.30917 0.81333 1.10438 1.24671 0.90307 0.91405 0.90860 1.80971 1.17307 1.12240 1.13328 1.25415 0.90625 0.92219 0.91038 1.81022 1.17930 1.10910 1.14355 1.19637 0.95821 0.92766 1.18079 0.92075 0.93361 0.83756 0.73230 0.75946 0.72292 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.57 113.37 1.20 1.84 16 2 O -0.34 -8.33 10.41 -57.44 -0.60 -8.93 16 3 C 0.54 17.68 7.93 70.06 0.56 18.24 16 4 O -0.54 -22.43 12.71 19.53 0.25 -22.18 16 5 C -0.24 -7.02 6.27 -19.10 -0.12 -7.14 16 6 C 0.18 3.08 11.65 83.69 0.97 4.05 16 7 N -0.53 -9.58 5.95 -191.76 -1.14 -10.72 16 8 H 0.45 4.15 8.96 -92.71 -0.83 3.32 16 9 C 0.33 9.83 8.46 133.78 1.13 10.96 16 10 N -0.58 -18.16 10.47 -197.90 -2.07 -20.23 16 11 C 0.35 11.43 12.23 180.88 2.21 13.65 16 12 N -0.59 -24.04 8.44 -197.23 -1.66 -25.71 16 13 C 0.50 21.65 5.85 133.22 0.78 22.43 16 14 N -0.62 -28.87 3.36 -184.03 -0.62 -29.49 16 15 C 0.36 17.56 5.62 38.99 0.22 17.78 16 16 C -0.34 -15.57 7.64 23.08 0.18 -15.39 16 17 H 0.10 4.76 7.02 -2.91 -0.02 4.74 16 18 C 0.05 2.12 4.73 85.56 0.40 2.53 16 19 N -0.74 -30.84 10.69 21.98 0.23 -30.61 16 20 Si 0.99 31.85 29.57 68.60 2.03 33.88 16 21 H -0.26 -8.11 7.11 99.48 0.71 -7.41 16 22 H -0.26 -7.85 7.11 99.48 0.71 -7.14 16 23 H -0.25 -8.04 7.11 99.48 0.71 -7.34 16 24 C -0.34 -17.11 5.88 -20.08 -0.12 -17.23 16 25 C 0.33 16.97 13.91 88.34 1.23 18.20 16 26 N -0.55 -28.43 18.53 18.99 0.35 -28.08 16 27 C 0.31 16.33 14.79 88.31 1.31 17.63 16 28 N -0.56 -29.52 18.55 19.02 0.35 -29.17 16 29 C -0.25 -9.16 6.30 -19.98 -0.13 -9.28 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.25 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.22 5.54 8.06 -2.91 -0.02 5.52 16 35 H 0.42 20.27 4.01 -152.98 -0.61 19.66 16 36 H 0.31 11.55 8.29 -92.71 -0.77 10.78 16 Total: -1.00 -72.33 340.66 6.73 -65.60 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.22 Total: 27.38 kcal Atomic # 6 Polarization: 68.43 SS G_CDS: 9.83 Total: 78.25 kcal Atomic # 7 Polarization: -169.45 SS G_CDS: -4.56 Total: -174.00 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.35 Total: -31.10 kcal Atomic # 14 Polarization: 31.85 SS G_CDS: 2.03 Total: 33.88 kcal Total: -72.33 6.73 -65.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.938 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds