Wall clock time and date at job start Tue Mar 31 2020 20:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99917 * 2 1 4 4 O 1.20832 * 120.00039 * 359.72139 * 3 2 1 5 5 C 1.50695 * 120.00008 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.47068 * 299.71734 * 5 3 2 7 7 O 1.20823 * 119.99800 * 0.02562 * 6 5 3 8 8 O 1.34223 * 120.00263 * 179.97438 * 6 5 3 9 9 C 1.45204 * 117.00315 * 180.02562 * 8 6 5 10 10 C 1.50705 * 109.47540 * 179.72252 * 5 3 2 11 11 C 1.38064 * 119.95362 * 60.81959 * 10 5 3 12 12 C 1.39079 * 119.90730 * 180.02562 * 11 10 5 13 13 N 1.39256 * 120.09037 * 179.97438 * 12 11 10 14 14 C 1.32639 * 120.00046 * 171.30641 * 13 12 11 15 15 H 1.08001 * 119.99984 * 0.92140 * 14 13 12 16 16 C 1.46797 * 119.99980 * 180.92841 * 14 13 12 17 17 N 1.29326 * 119.99949 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00052 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46898 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46981 * 119.99912 * 18 16 14 21 21 H 1.48497 * 109.47161 * 239.99862 * 18 16 14 22 22 C 1.39118 * 119.81900 * 0.02562 * 12 11 10 23 23 C 1.38027 * 119.90626 * 0.02562 * 22 12 11 24 24 C 1.38309 * 119.95262 * 240.55929 * 10 5 3 25 25 N 1.48010 * 119.91251 * 359.97438 * 24 10 5 26 26 O 1.31696 * 120.00300 * 225.53423 * 25 24 10 27 27 O 1.31701 * 119.99833 * 45.53717 * 25 24 10 28 28 H 1.08998 * 109.47171 * 59.99987 * 1 2 3 29 29 H 1.08997 * 109.47462 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47515 * 300.00276 * 1 2 3 31 31 H 1.09001 * 109.47641 * 59.71949 * 5 3 2 32 32 H 1.08998 * 109.47264 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47024 * 300.00702 * 9 8 6 34 34 H 1.09001 * 109.46826 * 60.00268 * 9 8 6 35 35 H 1.08004 * 120.04918 * 359.97438 * 11 10 5 36 36 H 0.97001 * 119.99767 * 351.30662 * 13 12 11 37 37 H 0.97002 * 120.00064 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.04283 * 180.02562 * 22 12 11 39 39 H 1.08001 * 119.95041 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0051 5 6 3.5662 1.2749 -0.0006 6 6 4.1052 0.5976 1.2330 7 8 3.3453 0.1013 2.0305 8 8 5.4295 0.5447 1.4453 9 6 5.8773 -0.1238 2.6540 10 6 3.9936 2.7201 -0.0073 11 6 3.6300 3.5513 1.0333 12 6 4.0244 4.8850 1.0258 13 7 3.6593 5.7270 2.0732 14 6 4.1756 6.9460 2.1549 15 1 4.8677 7.2911 1.4010 16 6 3.8063 7.8262 3.2702 17 7 2.9773 7.4132 4.1728 18 14 4.5339 9.5429 3.3858 19 1 5.4477 9.7714 2.2378 20 1 3.4404 10.5470 3.3549 21 1 5.2915 9.6749 4.6561 22 6 4.7839 5.3759 -0.0314 23 6 5.1423 4.5384 -1.0684 24 6 4.7541 3.2104 -1.0533 25 7 5.1471 2.3141 -2.1637 26 8 6.3865 2.3216 -2.6090 27 8 4.2572 1.5091 -2.7066 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.9559 0.7766 -0.8883 32 1 6.9658 -0.0950 2.7032 33 1 5.4610 0.3827 3.5248 34 1 5.5411 -1.1606 2.6416 35 1 3.0393 3.1668 1.8516 36 1 3.0275 5.4219 2.7430 37 1 2.7336 7.9946 4.9100 38 1 5.0925 6.4107 -0.0407 39 1 5.7322 4.9186 -1.8893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:40 Heat of formation + Delta-G solvation = -105.802920 kcal Electronic energy + Delta-G solvation = -30003.206329 eV Core-core repulsion = 25495.468307 eV Total energy + Delta-G solvation = -4507.738023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.12043 -39.80852 -39.21998 -37.66391 -36.54922 -36.37826 -35.73973 -33.62055 -33.22231 -32.45377 -29.73600 -28.87788 -27.88137 -26.90344 -25.67041 -24.14985 -22.46691 -22.31121 -21.01853 -20.09753 -18.92101 -17.98797 -17.57921 -17.39763 -17.23061 -16.89598 -16.67416 -16.29531 -16.06282 -15.65323 -15.50613 -14.81981 -14.66513 -13.85380 -13.73091 -13.49866 -13.31460 -13.13616 -13.03173 -12.87857 -12.82996 -12.42775 -12.11685 -12.04190 -11.85633 -11.82792 -11.45763 -11.02575 -10.94209 -10.75840 -10.72008 -10.61943 -10.37208 -10.29098 -10.20631 -9.91568 -9.74998 -9.59178 -8.48631 -7.82171 -7.63211 -4.24474 0.41973 1.83457 2.04652 2.09647 2.17860 2.50534 2.60702 2.61922 2.68510 2.71270 3.12344 3.26857 3.81166 4.28684 4.40452 4.62690 4.78954 4.96032 5.13081 5.19741 5.21433 5.23042 5.30900 5.46724 5.53411 5.59911 5.81254 5.93212 6.07116 6.10747 6.27315 6.32071 6.46888 6.54697 6.76334 6.82739 6.97343 7.08141 7.41285 7.53528 7.68792 7.88473 7.97724 8.31633 8.52437 9.24769 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003950 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.993652 B = 7087.287713 C = 7755.231580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.347 6.347 3 C 0.494 3.506 4 O -0.476 6.476 5 C -0.051 4.051 6 C 0.485 3.515 7 O -0.496 6.496 8 O -0.342 6.342 9 C 0.036 3.964 10 C 0.013 3.987 11 C -0.158 4.158 12 C 0.125 3.875 13 N -0.440 5.440 14 C -0.294 4.294 15 H 0.133 0.867 16 C 0.039 3.961 17 N -0.790 5.790 18 Si 0.951 3.049 19 H -0.250 1.250 20 H -0.266 1.266 21 H -0.266 1.266 22 C -0.192 4.192 23 C -0.008 4.008 24 C -0.126 4.126 25 N 0.028 4.972 26 O -0.254 6.254 27 O -0.287 6.287 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.163 0.837 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.406 0.594 37 H 0.305 0.695 38 H 0.130 0.870 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -3.866 2.763 4.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.263 6.263 3 C 0.334 3.666 4 O -0.361 6.361 5 C -0.071 4.071 6 C 0.327 3.673 7 O -0.383 6.383 8 O -0.258 6.258 9 C -0.058 4.058 10 C 0.009 3.991 11 C -0.181 4.181 12 C -0.006 4.006 13 N -0.026 5.026 14 C -0.430 4.430 15 H 0.151 0.849 16 C -0.183 4.183 17 N -0.415 5.415 18 Si 0.773 3.227 19 H -0.173 1.173 20 H -0.191 1.191 21 H -0.191 1.191 22 C -0.216 4.216 23 C -0.031 4.031 24 C -0.225 4.225 25 N 0.468 4.532 26 O -0.427 6.427 27 O -0.448 6.448 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.180 0.820 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.241 0.759 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.966 -3.239 3.663 4.984 hybrid contribution -0.226 0.210 0.306 0.434 sum -1.191 -3.028 3.969 5.132 Atomic orbital electron populations 1.23258 0.76179 1.03527 1.02584 1.86491 1.23402 1.32514 1.83911 1.22180 0.89689 0.81914 0.72791 1.90714 1.65777 1.35984 1.43647 1.19946 0.90555 0.97165 0.99386 1.22696 0.81442 0.76685 0.86497 1.90694 1.58427 1.43565 1.45592 1.86559 1.24043 1.71187 1.43973 1.23331 1.00764 0.96987 0.84687 1.17483 0.97372 0.90121 0.94169 1.19727 1.06375 0.92123 0.99890 1.17367 1.02633 0.89624 0.90968 1.40437 1.31813 1.11288 1.19081 1.21519 1.22857 0.89892 1.08741 0.84919 1.27488 0.94766 1.02416 0.93636 1.68628 1.23897 1.39568 1.09442 0.85423 0.79683 0.77318 0.80290 1.17305 1.19076 1.19057 1.20056 1.07501 0.99752 0.94335 1.20053 0.95682 0.89642 0.97674 1.18717 1.20208 0.90979 0.92564 1.50069 1.00949 1.00804 1.01373 1.96138 0.98943 1.77088 1.70498 1.96070 1.44416 1.42190 1.62168 0.91754 0.88169 0.91868 0.82006 0.87770 0.91667 0.91770 0.86822 0.75851 0.88206 0.85259 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.35 -5.92 9.98 -44.24 -0.44 -6.36 16 3 C 0.49 9.58 6.59 36.00 0.24 9.81 16 4 O -0.48 -9.98 14.92 -18.75 -0.28 -10.26 16 5 C -0.05 -0.99 2.61 -94.08 -0.25 -1.24 16 6 C 0.48 8.91 6.82 36.01 0.25 9.16 16 7 O -0.50 -9.40 15.37 -23.73 -0.36 -9.77 16 8 O -0.34 -5.79 10.48 -39.24 -0.41 -6.20 16 9 C 0.04 0.44 10.56 101.05 1.07 1.50 16 10 C 0.01 0.27 4.31 -104.66 -0.45 -0.18 16 11 C -0.16 -3.18 7.91 -39.33 -0.31 -3.49 16 12 C 0.13 2.49 6.59 -83.85 -0.55 1.94 16 13 N -0.44 -8.62 5.29 -8.40 -0.04 -8.67 16 14 C -0.29 -5.66 9.78 -13.74 -0.13 -5.79 16 15 H 0.13 2.40 5.78 -52.49 -0.30 2.10 16 16 C 0.04 0.72 5.70 -15.15 -0.09 0.63 16 17 N -0.79 -15.26 13.08 56.00 0.73 -14.53 16 18 Si 0.95 14.06 29.65 -169.99 -5.04 9.02 16 19 H -0.25 -3.65 7.11 56.52 0.40 -3.24 16 20 H -0.27 -3.97 7.11 56.52 0.40 -3.57 16 21 H -0.27 -3.95 7.11 56.52 0.40 -3.55 16 22 C -0.19 -3.65 9.27 -39.33 -0.36 -4.02 16 23 C -0.01 -0.16 9.79 -39.61 -0.39 -0.55 16 24 C -0.13 -2.71 6.43 -79.88 -0.51 -3.23 16 25 N 0.03 0.63 4.50 34.00 0.15 0.79 16 26 O -0.25 -5.95 19.82 -31.57 -0.63 -6.57 16 27 O -0.29 -6.73 17.31 -31.57 -0.55 -7.28 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.16 3.26 5.10 -51.93 -0.26 3.00 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 34 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.11 2.24 8.01 -52.48 -0.42 1.82 16 36 H 0.41 7.98 7.98 -40.82 -0.33 7.65 16 37 H 0.31 5.29 8.26 -40.82 -0.34 4.96 16 38 H 0.13 2.22 6.05 -52.49 -0.32 1.90 16 39 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -27.45 356.71 -5.65 -33.09 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -3.72 Total: 15.26 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.43 Total: 6.11 kcal Atomic # 7 Polarization: -23.25 SS G_CDS: 0.84 Total: -22.41 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -2.67 Total: -46.45 kcal Atomic # 14 Polarization: 14.06 SS G_CDS: -5.04 Total: 9.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.45 -5.65 -33.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.711 kcal (2) G-P(sol) polarization free energy of solvation -27.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds