Wall clock time and date at job start Tue Mar 31 2020 20:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99917 * 2 1 4 4 O 1.20832 * 120.00039 * 359.72139 * 3 2 1 5 5 C 1.50695 * 120.00008 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.47068 * 299.71734 * 5 3 2 7 7 O 1.20823 * 119.99800 * 0.02562 * 6 5 3 8 8 O 1.34223 * 120.00263 * 179.97438 * 6 5 3 9 9 C 1.45204 * 117.00315 * 180.02562 * 8 6 5 10 10 C 1.50705 * 109.47540 * 179.72252 * 5 3 2 11 11 C 1.38064 * 119.95362 * 60.81959 * 10 5 3 12 12 C 1.39079 * 119.90730 * 180.02562 * 11 10 5 13 13 N 1.39256 * 120.09037 * 179.97438 * 12 11 10 14 14 C 1.32639 * 120.00046 * 171.30641 * 13 12 11 15 15 H 1.08001 * 119.99984 * 0.92140 * 14 13 12 16 16 C 1.46797 * 119.99980 * 180.92841 * 14 13 12 17 17 N 1.29326 * 119.99949 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00052 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46898 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46981 * 119.99912 * 18 16 14 21 21 H 1.48497 * 109.47161 * 239.99862 * 18 16 14 22 22 C 1.39118 * 119.81900 * 0.02562 * 12 11 10 23 23 C 1.38027 * 119.90626 * 0.02562 * 22 12 11 24 24 C 1.38309 * 119.95262 * 240.55929 * 10 5 3 25 25 N 1.48010 * 119.91251 * 359.97438 * 24 10 5 26 26 O 1.31696 * 120.00300 * 225.53423 * 25 24 10 27 27 O 1.31701 * 119.99833 * 45.53717 * 25 24 10 28 28 H 1.08998 * 109.47171 * 59.99987 * 1 2 3 29 29 H 1.08997 * 109.47462 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47515 * 300.00276 * 1 2 3 31 31 H 1.09001 * 109.47641 * 59.71949 * 5 3 2 32 32 H 1.08998 * 109.47264 * 180.02562 * 9 8 6 33 33 H 1.08997 * 109.47024 * 300.00702 * 9 8 6 34 34 H 1.09001 * 109.46826 * 60.00268 * 9 8 6 35 35 H 1.08004 * 120.04918 * 359.97438 * 11 10 5 36 36 H 0.97001 * 119.99767 * 351.30662 * 13 12 11 37 37 H 0.97002 * 120.00064 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.04283 * 180.02562 * 22 12 11 39 39 H 1.08001 * 119.95041 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0051 5 6 3.5662 1.2749 -0.0006 6 6 4.1052 0.5976 1.2330 7 8 3.3453 0.1013 2.0305 8 8 5.4295 0.5447 1.4453 9 6 5.8773 -0.1238 2.6540 10 6 3.9936 2.7201 -0.0073 11 6 3.6300 3.5513 1.0333 12 6 4.0244 4.8850 1.0258 13 7 3.6593 5.7270 2.0732 14 6 4.1756 6.9460 2.1549 15 1 4.8677 7.2911 1.4010 16 6 3.8063 7.8262 3.2702 17 7 2.9773 7.4132 4.1728 18 14 4.5339 9.5429 3.3858 19 1 5.4477 9.7714 2.2378 20 1 3.4404 10.5470 3.3549 21 1 5.2915 9.6749 4.6561 22 6 4.7839 5.3759 -0.0314 23 6 5.1423 4.5384 -1.0684 24 6 4.7541 3.2104 -1.0533 25 7 5.1471 2.3141 -2.1637 26 8 6.3865 2.3216 -2.6090 27 8 4.2572 1.5091 -2.7066 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.9559 0.7766 -0.8883 32 1 6.9658 -0.0950 2.7032 33 1 5.4610 0.3827 3.5248 34 1 5.5411 -1.1606 2.6416 35 1 3.0393 3.1668 1.8516 36 1 3.0275 5.4219 2.7430 37 1 2.7336 7.9946 4.9100 38 1 5.0925 6.4107 -0.0407 39 1 5.7322 4.9186 -1.8893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:38 Heat of formation + Delta-G solvation = -121.467778 kcal Electronic energy + Delta-G solvation = -30003.885608 eV Core-core repulsion = 25495.468307 eV Total energy + Delta-G solvation = -4508.417302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.42896 -41.13774 -40.83509 -38.91436 -37.73667 -37.63553 -37.07966 -35.55658 -34.22851 -33.30439 -31.22862 -30.10743 -28.92897 -28.07323 -27.46066 -25.51795 -23.88305 -23.59582 -22.35784 -21.70428 -20.76556 -19.36709 -18.93320 -18.80447 -18.22351 -18.12294 -17.85504 -17.50518 -17.34545 -17.31859 -16.75772 -16.37613 -15.79333 -15.23787 -15.09556 -14.76976 -14.59914 -14.47581 -14.40307 -14.30023 -14.13814 -13.83306 -13.54994 -13.37607 -13.30523 -13.04380 -12.93729 -12.40079 -12.13918 -12.03311 -11.92252 -11.87436 -11.75407 -11.67077 -11.46804 -10.75856 -10.64299 -10.43460 -10.03620 -9.86516 -9.26512 -5.83723 -1.20910 0.55266 0.65871 0.80664 0.81292 1.16588 1.37185 1.42560 1.67346 1.92514 1.98168 2.08187 2.09873 2.22946 2.93067 3.39558 3.54181 3.59620 3.77559 3.96780 4.04722 4.20455 4.23109 4.25499 4.27518 4.28722 4.39545 4.59392 4.60400 4.62730 4.85017 5.01100 5.04161 5.09735 5.17303 5.34001 5.41531 5.69558 5.83710 6.17219 6.27772 6.41214 6.51846 6.81320 6.94428 7.63011 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003950 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.993652 B = 7087.287713 C = 7755.231580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.498 3.502 4 O -0.502 6.502 5 C -0.051 4.051 6 C 0.495 3.505 7 O -0.509 6.509 8 O -0.358 6.358 9 C 0.025 3.975 10 C -0.092 4.092 11 C -0.056 4.056 12 C -0.066 4.066 13 N -0.358 5.358 14 C -0.022 4.022 15 H 0.203 0.797 16 C 0.000 4.000 17 N -0.687 5.687 18 Si 1.031 2.969 19 H -0.225 1.225 20 H -0.254 1.254 21 H -0.253 1.253 22 C -0.087 4.087 23 C -0.116 4.116 24 C -0.034 4.034 25 N -0.015 5.015 26 O -0.545 6.545 27 O -0.544 6.544 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.424 0.576 37 H 0.353 0.647 38 H 0.172 0.828 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 12.863 19.443 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.340 3.660 4 O -0.390 6.390 5 C -0.071 4.071 6 C 0.338 3.662 7 O -0.398 6.398 8 O -0.274 6.274 9 C -0.067 4.067 10 C -0.097 4.097 11 C -0.080 4.080 12 C -0.184 4.184 13 N 0.061 4.939 14 C -0.186 4.186 15 H 0.220 0.780 16 C -0.235 4.235 17 N -0.310 5.310 18 Si 0.844 3.156 19 H -0.147 1.147 20 H -0.178 1.178 21 H -0.177 1.177 22 C -0.111 4.111 23 C -0.138 4.138 24 C -0.157 4.157 25 N 0.314 4.686 26 O -0.636 6.636 27 O -0.633 6.633 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.263 0.737 37 H 0.171 0.829 38 H 0.189 0.811 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.529 12.421 19.393 23.471 hybrid contribution -0.372 -0.747 -0.360 0.909 sum -4.901 11.674 19.033 22.860 Atomic orbital electron populations 1.23651 0.73903 1.06098 1.02793 1.86496 1.25860 1.31764 1.83377 1.22398 0.89887 0.82055 0.71653 1.90581 1.66223 1.36575 1.45623 1.19786 0.90278 0.98140 0.98920 1.22537 0.81756 0.76063 0.85831 1.90615 1.58668 1.44469 1.46095 1.86608 1.23363 1.71390 1.45997 1.23736 1.02537 0.97223 0.83225 1.17490 1.05606 0.90702 0.95859 1.19848 0.98766 0.92142 0.97208 1.16684 1.16426 0.90280 0.95003 1.41515 1.24956 1.10546 1.16898 1.24921 1.05733 0.85509 1.02480 0.78032 1.29334 0.95385 1.06733 0.92057 1.68565 1.14017 1.41917 1.06476 0.84241 0.79690 0.69323 0.82350 1.14697 1.17826 1.17691 1.20322 0.99838 1.00098 0.90826 1.20065 1.03361 0.90053 1.00365 1.19292 1.13504 0.91564 0.91359 1.48611 1.00004 1.10391 1.09579 1.95775 1.01967 1.86072 1.79833 1.95704 1.46078 1.52649 1.68913 0.91981 0.84487 0.91083 0.84914 0.85017 0.90554 0.91093 0.86427 0.73716 0.82925 0.81099 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.02 16 2 O -0.36 -14.91 9.98 -46.66 -0.47 -15.38 16 3 C 0.50 23.53 6.59 71.23 0.47 24.00 16 4 O -0.50 -23.95 14.92 21.95 0.33 -23.62 16 5 C -0.05 -2.61 2.61 -13.03 -0.03 -2.64 16 6 C 0.50 21.92 6.82 71.24 0.49 22.41 16 7 O -0.51 -21.60 15.37 26.74 0.41 -21.19 16 8 O -0.36 -14.77 10.48 -51.34 -0.54 -15.30 16 9 C 0.03 0.69 10.56 113.37 1.20 1.88 16 10 C -0.09 -4.60 4.31 -19.89 -0.09 -4.69 16 11 C -0.06 -2.24 7.91 22.43 0.18 -2.07 16 12 C -0.07 -2.14 6.59 38.38 0.25 -1.88 16 13 N -0.36 -7.79 5.29 -180.48 -0.96 -8.75 16 14 C -0.02 -0.34 9.78 86.81 0.85 0.51 16 15 H 0.20 2.00 5.78 -2.91 -0.02 1.98 16 16 C 0.00 0.00 5.70 87.30 0.50 0.50 16 17 N -0.69 -9.93 13.08 23.26 0.30 -9.62 16 18 Si 1.03 6.92 29.65 68.60 2.03 8.95 16 19 H -0.23 -1.38 7.11 99.48 0.71 -0.68 16 20 H -0.25 -2.08 7.11 99.48 0.71 -1.38 16 21 H -0.25 -2.03 7.11 99.48 0.71 -1.32 16 22 C -0.09 -2.90 9.27 22.43 0.21 -2.70 16 23 C -0.12 -5.46 9.79 22.25 0.22 -5.24 16 24 C -0.03 -1.96 6.43 36.42 0.23 -1.72 16 25 N -0.02 -1.07 4.50 -46.36 -0.21 -1.28 16 26 O -0.55 -41.20 19.82 3.52 0.07 -41.13 16 27 O -0.54 -40.56 17.31 3.51 0.06 -40.50 16 28 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 29 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.13 8.00 5.10 -2.39 -0.01 7.98 16 32 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 34 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 35 H 0.12 4.31 8.01 -2.91 -0.02 4.29 16 36 H 0.42 8.65 7.98 -92.71 -0.74 7.91 16 37 H 0.35 3.65 8.26 -92.71 -0.77 2.88 16 38 H 0.17 3.67 6.05 -2.91 -0.02 3.65 16 39 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -101.18 356.71 7.11 -94.07 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: 0.40 Total: 43.35 kcal Atomic # 6 Polarization: 24.73 SS G_CDS: 5.67 Total: 30.39 kcal Atomic # 7 Polarization: -18.79 SS G_CDS: -0.86 Total: -19.65 kcal Atomic # 8 Polarization: -156.98 SS G_CDS: -0.13 Total: -157.12 kcal Atomic # 14 Polarization: 6.92 SS G_CDS: 2.03 Total: 8.95 kcal Total: -101.18 7.11 -94.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.398 kcal (2) G-P(sol) polarization free energy of solvation -101.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds