Wall clock time and date at job start Tue Mar 31 2020 20:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46898 * 109.47632 * 2 1 4 4 C 1.46899 * 111.00165 * 199.53043 * 3 2 1 5 5 C 1.50701 * 109.47361 * 66.04260 * 4 3 2 6 6 H 1.07997 * 119.99442 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99850 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00590 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99863 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.46948 * 60.00516 * 9 7 5 11 11 H 1.48504 * 109.47178 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47160 * 300.00383 * 9 7 5 13 13 C 1.37977 * 110.99819 * 75.57134 * 3 2 1 14 14 N 1.32919 * 120.81059 * 59.03631 * 13 3 2 15 15 C 1.32163 * 121.11881 * 179.97438 * 14 13 3 16 16 Cl 1.73602 * 118.65556 * 179.97438 * 15 14 13 17 17 N 1.31725 * 122.69025 * 359.97285 * 15 14 13 18 18 C 1.33153 * 120.76453 * 0.03495 * 17 15 14 19 19 N 1.36598 * 133.91791 * 179.97438 * 18 17 15 20 20 H 0.97001 * 125.56616 * 0.04286 * 19 18 17 21 21 C 1.38531 * 108.86628 * 180.02562 * 19 18 17 22 22 C 1.46633 * 125.51477 * 180.02562 * 21 19 18 23 23 O 1.21608 * 119.99590 * 180.02562 * 22 21 19 24 24 O 1.34879 * 120.00064 * 0.30283 * 22 21 19 25 25 C 1.45198 * 117.00067 * 179.72573 * 24 22 21 26 26 C 1.36196 * 108.96850 * 0.26253 * 21 19 18 27 27 C 1.40938 * 120.81674 * 239.00355 * 13 3 2 28 28 H 1.08996 * 109.47674 * 184.86731 * 1 2 3 29 29 H 1.09001 * 109.46695 * 304.87002 * 1 2 3 30 30 H 1.09003 * 109.47130 * 64.86651 * 1 2 3 31 31 H 1.09005 * 109.46765 * 239.99829 * 2 1 3 32 32 H 1.09002 * 109.46999 * 120.00670 * 2 1 3 33 33 H 1.09005 * 109.46987 * 186.05092 * 4 3 2 34 34 H 1.09006 * 109.46863 * 306.04147 * 4 3 2 35 35 H 0.97003 * 120.00338 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47469 * 59.99954 * 25 24 22 37 37 H 1.08998 * 109.47203 * 179.97438 * 25 24 22 38 38 H 1.08992 * 109.47108 * 299.99647 * 25 24 22 39 39 H 1.07995 * 126.22021 * 179.70056 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4138 1.4503 -0.4585 5 6 3.4855 1.0447 -1.9081 6 1 2.5854 0.7665 -2.4360 7 6 4.7000 1.0297 -2.5604 8 7 5.7960 1.3689 -1.9176 9 14 4.7888 0.5275 -4.3575 10 1 3.9562 1.4496 -5.1708 11 1 6.1981 0.5935 -4.8209 12 1 4.2828 -0.8603 -4.5093 13 6 1.8820 1.9581 1.2475 14 7 2.4755 1.4253 2.3108 15 6 2.3481 1.9695 3.5084 16 17 3.1505 1.2200 4.8531 17 7 1.6371 3.0574 3.7236 18 6 1.0038 3.6660 2.7230 19 7 0.2133 4.7769 2.6382 20 1 -0.0313 5.3531 3.3792 21 6 -0.1816 4.9462 1.3212 22 6 -1.0376 6.0265 0.8208 23 8 -1.3230 6.0785 -0.3602 24 8 -1.5039 6.9655 1.6694 25 6 -2.3407 8.0084 1.1033 26 6 0.3496 3.9440 0.5674 27 6 1.1091 3.1231 1.4255 28 1 -0.3634 -1.0239 0.0872 29 1 -0.3633 0.5876 0.8432 30 1 -0.3633 0.4365 -0.9304 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7854 2.4690 -0.3473 34 1 4.0248 0.7736 0.1389 35 1 6.6506 1.3579 -2.3765 36 1 -3.2241 7.5592 0.6494 37 1 -2.6474 8.6960 1.8915 38 1 -1.7791 8.5527 0.3442 39 1 0.2154 3.8049 -0.4951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:27 Heat of formation + Delta-G solvation = 11.570382 kcal Electronic energy + Delta-G solvation = -26725.367698 eV Core-core repulsion = 22695.721279 eV Total energy + Delta-G solvation = -4029.646419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.23560 -40.52226 -38.97475 -37.39781 -36.74840 -36.39173 -33.22282 -32.49956 -31.47812 -30.36422 -29.70354 -28.10641 -26.77765 -24.70746 -23.68318 -22.60279 -22.28352 -20.94658 -20.43327 -19.28655 -18.27792 -17.14513 -16.76425 -16.64656 -16.35859 -15.82474 -15.43830 -15.14525 -14.94057 -14.54320 -14.10949 -13.86810 -13.83771 -13.52627 -13.22205 -13.16357 -12.55536 -12.49304 -12.26275 -11.58725 -11.39675 -11.34962 -11.16500 -11.15567 -11.10055 -11.00955 -10.95007 -10.72447 -10.56468 -10.38998 -10.01707 -9.52170 -9.24178 -9.19795 -8.55876 -8.25000 -7.88236 -6.10520 -4.14049 0.22692 1.26583 1.36325 1.61059 2.17605 2.58310 2.84822 3.31205 3.35755 3.37807 3.73156 3.92048 4.31208 4.39453 4.49378 4.59942 4.77913 4.87613 4.89463 5.14669 5.18296 5.25694 5.35848 5.64494 5.73327 5.83951 5.90125 6.00195 6.12916 6.29006 6.44562 6.53100 6.66101 6.66492 7.04348 7.15346 7.22264 7.39314 7.63239 7.72676 7.96768 8.03676 8.30891 8.91091 9.50132 11.00058 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008254 B = 0.004262 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.390005 B = 6567.436606 C = 8893.052741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 N -0.489 5.489 4 C 0.203 3.797 5 C -0.516 4.516 6 H 0.069 0.931 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.472 3.528 14 N -0.558 5.558 15 C 0.419 3.581 16 Cl 0.021 6.979 17 N -0.542 5.542 18 C 0.355 3.645 19 N -0.546 5.546 20 H 0.430 0.570 21 C 0.007 3.993 22 C 0.538 3.462 23 O -0.483 6.483 24 O -0.362 6.362 25 C 0.039 3.961 26 C -0.015 4.015 27 C -0.208 4.208 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.049 7.573 10.446 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 N -0.214 5.214 4 C 0.080 3.920 5 C -0.554 4.554 6 H 0.087 0.913 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.729 3.271 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.228 3.772 14 N -0.281 5.281 15 C 0.121 3.879 16 Cl 0.048 6.952 17 N -0.267 5.267 18 C 0.112 3.888 19 N -0.155 5.155 20 H 0.270 0.730 21 C -0.098 4.098 22 C 0.382 3.618 23 O -0.369 6.369 24 O -0.279 6.279 25 C -0.055 4.055 26 C -0.043 4.043 27 C -0.220 4.220 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.034 0.966 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.820 7.619 10.688 19.059 hybrid contribution 0.227 0.167 -0.489 0.565 sum -13.593 7.786 10.198 18.692 Atomic orbital electron populations 1.21813 0.96079 1.00706 1.01777 1.22162 0.94353 0.87286 1.03248 1.60399 1.27287 1.19747 1.13960 1.19886 0.78054 0.97871 0.96153 1.21003 0.93704 1.46028 0.94667 0.91336 1.24962 0.95444 0.95229 0.98579 1.69953 0.98597 1.47700 1.36904 0.86501 0.76986 0.79165 0.84434 1.20028 1.21330 1.20098 1.20161 0.81950 0.86394 0.88669 1.68368 1.25418 1.35748 0.98578 1.22308 0.90437 0.87138 0.87982 1.98420 1.76226 1.79427 1.41093 1.66554 1.14187 1.11392 1.34606 1.17913 0.92534 0.88756 0.89613 1.41419 1.42173 1.22952 1.08987 0.72976 1.18927 1.07355 0.99898 0.83646 1.19646 0.77681 0.80162 0.84273 1.90964 1.55586 1.73987 1.16401 1.86554 1.62831 1.36989 1.41556 1.23322 0.93652 0.88147 1.00373 1.20963 0.92920 0.89892 1.00510 1.19215 1.07211 1.00902 0.94633 0.92639 0.94187 0.91778 0.88047 0.93574 0.95109 0.96622 0.92617 0.91502 0.87848 0.91433 0.80639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.07 37.15 0.37 -1.84 16 2 C 0.06 1.04 5.49 -3.83 -0.02 1.02 16 3 N -0.49 -10.15 4.42 -174.15 -0.77 -10.92 16 4 C 0.20 5.10 4.55 -4.98 -0.02 5.07 16 5 C -0.52 -13.66 8.23 -34.44 -0.28 -13.94 16 6 H 0.07 1.75 7.31 -52.49 -0.38 1.37 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 C 0.47 9.18 4.59 -154.88 -0.71 8.47 16 14 N -0.56 -10.87 9.55 -10.67 -0.10 -10.97 16 15 C 0.42 7.33 8.16 -91.90 -0.75 6.59 16 16 Cl 0.02 0.30 29.25 -51.86 -1.52 -1.21 16 17 N -0.54 -8.96 10.42 -10.92 -0.11 -9.08 16 18 C 0.35 5.56 8.45 -155.94 -1.32 4.24 16 19 N -0.55 -6.72 6.16 -8.85 -0.05 -6.78 16 20 H 0.43 4.01 8.96 -40.82 -0.37 3.65 16 21 C 0.01 0.09 7.00 -82.18 -0.58 -0.48 16 22 C 0.54 6.64 7.93 34.12 0.27 6.91 16 23 O -0.48 -7.05 16.64 -19.35 -0.32 -7.37 16 24 O -0.36 -3.54 10.57 -40.98 -0.43 -3.97 16 25 C 0.04 0.26 10.57 101.05 1.07 1.33 16 26 C -0.02 -0.23 10.53 -39.29 -0.41 -0.65 16 27 C -0.21 -3.59 6.16 -106.78 -0.66 -4.25 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.61 7.59 -51.93 -0.39 0.21 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.99 6.58 -51.93 -0.34 1.65 16 32 H 0.05 0.87 7.44 -51.93 -0.39 0.48 16 33 H 0.03 0.85 8.05 -51.93 -0.42 0.43 16 34 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.18 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -30.59 359.47 -9.70 -40.28 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -4.38 Total: -0.18 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -3.14 Total: 14.02 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.30 Total: -62.81 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.76 Total: -11.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.59 -9.70 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.855 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds