Wall clock time and date at job start Tue Mar 31 2020 20:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46898 * 109.47632 * 2 1 4 4 C 1.46899 * 111.00165 * 199.53043 * 3 2 1 5 5 C 1.50701 * 109.47361 * 66.04260 * 4 3 2 6 6 H 1.07997 * 119.99442 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99850 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00590 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99863 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.46948 * 60.00516 * 9 7 5 11 11 H 1.48504 * 109.47178 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47160 * 300.00383 * 9 7 5 13 13 C 1.37977 * 110.99819 * 75.57134 * 3 2 1 14 14 N 1.32919 * 120.81059 * 59.03631 * 13 3 2 15 15 C 1.32163 * 121.11881 * 179.97438 * 14 13 3 16 16 Cl 1.73602 * 118.65556 * 179.97438 * 15 14 13 17 17 N 1.31725 * 122.69025 * 359.97285 * 15 14 13 18 18 C 1.33153 * 120.76453 * 0.03495 * 17 15 14 19 19 N 1.36598 * 133.91791 * 179.97438 * 18 17 15 20 20 H 0.97001 * 125.56616 * 0.04286 * 19 18 17 21 21 C 1.38531 * 108.86628 * 180.02562 * 19 18 17 22 22 C 1.46633 * 125.51477 * 180.02562 * 21 19 18 23 23 O 1.21608 * 119.99590 * 180.02562 * 22 21 19 24 24 O 1.34879 * 120.00064 * 0.30283 * 22 21 19 25 25 C 1.45198 * 117.00067 * 179.72573 * 24 22 21 26 26 C 1.36196 * 108.96850 * 0.26253 * 21 19 18 27 27 C 1.40938 * 120.81674 * 239.00355 * 13 3 2 28 28 H 1.08996 * 109.47674 * 184.86731 * 1 2 3 29 29 H 1.09001 * 109.46695 * 304.87002 * 1 2 3 30 30 H 1.09003 * 109.47130 * 64.86651 * 1 2 3 31 31 H 1.09005 * 109.46765 * 239.99829 * 2 1 3 32 32 H 1.09002 * 109.46999 * 120.00670 * 2 1 3 33 33 H 1.09005 * 109.46987 * 186.05092 * 4 3 2 34 34 H 1.09006 * 109.46863 * 306.04147 * 4 3 2 35 35 H 0.97003 * 120.00338 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47469 * 59.99954 * 25 24 22 37 37 H 1.08998 * 109.47203 * 179.97438 * 25 24 22 38 38 H 1.08992 * 109.47108 * 299.99647 * 25 24 22 39 39 H 1.07995 * 126.22021 * 179.70056 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4138 1.4503 -0.4585 5 6 3.4855 1.0447 -1.9081 6 1 2.5854 0.7665 -2.4360 7 6 4.7000 1.0297 -2.5604 8 7 5.7960 1.3689 -1.9176 9 14 4.7888 0.5275 -4.3575 10 1 3.9562 1.4496 -5.1708 11 1 6.1981 0.5935 -4.8209 12 1 4.2828 -0.8603 -4.5093 13 6 1.8820 1.9581 1.2475 14 7 2.4755 1.4253 2.3108 15 6 2.3481 1.9695 3.5084 16 17 3.1505 1.2200 4.8531 17 7 1.6371 3.0574 3.7236 18 6 1.0038 3.6660 2.7230 19 7 0.2133 4.7769 2.6382 20 1 -0.0313 5.3531 3.3792 21 6 -0.1816 4.9462 1.3212 22 6 -1.0376 6.0265 0.8208 23 8 -1.3230 6.0785 -0.3602 24 8 -1.5039 6.9655 1.6694 25 6 -2.3407 8.0084 1.1033 26 6 0.3496 3.9440 0.5674 27 6 1.1091 3.1231 1.4255 28 1 -0.3634 -1.0239 0.0872 29 1 -0.3633 0.5876 0.8432 30 1 -0.3633 0.4365 -0.9304 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7854 2.4690 -0.3473 34 1 4.0248 0.7736 0.1389 35 1 6.6506 1.3579 -2.3765 36 1 -3.2241 7.5592 0.6494 37 1 -2.6474 8.6960 1.8915 38 1 -1.7791 8.5527 0.3442 39 1 0.2154 3.8049 -0.4951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:27 Heat of formation + Delta-G solvation = -6.929593 kcal Electronic energy + Delta-G solvation = -26726.169917 eV Core-core repulsion = 22695.721279 eV Total energy + Delta-G solvation = -4030.448638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.49592 -41.55730 -40.26297 -38.85038 -37.77511 -37.61880 -35.01392 -34.12927 -32.73513 -31.79618 -31.00244 -29.17356 -28.31674 -25.95416 -25.07719 -24.40089 -23.48349 -22.36252 -21.64267 -20.45845 -19.43395 -18.60122 -18.16535 -17.76833 -17.69671 -17.21682 -16.79809 -16.58180 -16.30118 -16.03682 -15.72968 -14.97854 -14.83213 -14.75547 -14.59082 -14.31907 -14.19064 -14.09794 -13.10119 -12.95063 -12.91518 -12.82996 -12.61870 -12.57616 -12.49193 -12.37739 -12.15572 -12.05203 -11.89966 -11.87634 -11.77317 -11.44061 -10.67356 -10.62616 -10.51221 -9.63418 -9.45841 -8.19916 -6.31084 -1.05777 -0.09218 0.08075 0.42436 1.12421 1.46840 1.49887 1.55857 1.57432 1.75452 2.32375 2.40727 2.56474 3.00981 3.14392 3.30945 3.51034 3.59293 3.76533 4.12833 4.26468 4.29547 4.36745 4.40385 4.55571 4.68839 4.74218 4.84690 4.96643 5.00369 5.07197 5.09360 5.18461 5.21580 5.34856 5.42844 5.64380 5.93450 5.97373 6.06530 6.42383 6.44012 6.66628 6.81873 7.38271 8.91587 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.008254 B = 0.004262 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.390005 B = 6567.436606 C = 8893.052741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 N -0.487 5.487 4 C 0.225 3.775 5 C -0.524 4.524 6 H 0.076 0.924 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.446 3.554 14 N -0.579 5.579 15 C 0.402 3.598 16 Cl 0.041 6.959 17 N -0.531 5.531 18 C 0.348 3.652 19 N -0.521 5.521 20 H 0.448 0.552 21 C 0.037 3.963 22 C 0.548 3.452 23 O -0.504 6.504 24 O -0.354 6.354 25 C 0.029 3.971 26 C -0.040 4.040 27 C -0.213 4.213 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.037 0.963 33 H -0.003 1.003 34 H -0.019 1.019 35 H 0.265 0.735 36 H 0.070 0.930 37 H 0.139 0.861 38 H 0.067 0.933 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.277 8.735 10.533 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.071 4.071 3 N -0.211 5.211 4 C 0.101 3.899 5 C -0.562 4.562 6 H 0.095 0.905 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.796 3.204 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.188 1.188 13 C 0.203 3.797 14 N -0.303 5.303 15 C 0.105 3.895 16 Cl 0.069 6.931 17 N -0.255 5.255 18 C 0.104 3.896 19 N -0.132 5.132 20 H 0.292 0.708 21 C -0.070 4.070 22 C 0.392 3.608 23 O -0.392 6.392 24 O -0.271 6.271 25 C -0.063 4.063 26 C -0.067 4.067 27 C -0.225 4.225 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.015 0.985 34 H -0.001 1.001 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.085 0.915 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.094 8.806 10.829 21.303 hybrid contribution 0.816 -0.042 -0.388 0.905 sum -15.278 8.763 10.441 20.475 Atomic orbital electron populations 1.21700 0.92974 1.02367 1.01902 1.22200 0.96802 0.86042 1.02013 1.60278 1.24305 1.20967 1.15505 1.19362 0.80312 0.94717 0.95520 1.21330 0.94084 1.45494 0.95269 0.90549 1.25899 0.94983 0.95072 1.03260 1.70101 0.99220 1.49100 1.38898 0.85392 0.76955 0.79343 0.78694 1.19121 1.21304 1.18816 1.20140 0.83747 0.87632 0.88202 1.68240 1.26030 1.36596 0.99413 1.22508 0.91240 0.87715 0.88075 1.98416 1.75849 1.79173 1.39679 1.66642 1.13616 1.10834 1.34447 1.17984 0.93108 0.89598 0.88936 1.41338 1.40621 1.21856 1.09352 0.70826 1.18996 1.05564 0.99034 0.83371 1.19407 0.77218 0.80225 0.83992 1.90968 1.56281 1.74495 1.17454 1.86553 1.62804 1.36852 1.40865 1.23713 0.93126 0.87587 1.01896 1.20946 0.94198 0.90865 1.00673 1.19294 1.07004 1.00215 0.95945 0.90090 0.94308 0.91356 0.89515 0.94490 0.98501 1.00104 0.92621 0.91155 0.84345 0.91469 0.80844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 10.07 71.98 0.72 -3.17 16 2 C 0.06 2.12 5.49 86.30 0.47 2.59 16 3 N -0.49 -20.99 4.42 -704.88 -3.12 -24.10 16 4 C 0.23 11.95 4.55 85.56 0.39 12.34 16 5 C -0.52 -28.51 8.23 25.60 0.21 -28.30 16 6 H 0.08 3.95 7.31 -2.91 -0.02 3.93 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -55.68 13.29 21.44 0.28 -55.39 16 9 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 13 C 0.45 17.92 4.59 133.70 0.61 18.54 16 14 N -0.58 -23.37 9.55 -187.67 -1.79 -25.16 16 15 C 0.40 14.20 8.16 180.79 1.47 15.68 16 16 Cl 0.04 1.21 29.25 -2.72 -0.08 1.13 16 17 N -0.53 -17.21 10.42 -188.46 -1.96 -19.17 16 18 C 0.35 10.59 8.45 134.11 1.13 11.73 16 19 N -0.52 -11.72 6.16 -181.93 -1.12 -12.84 16 20 H 0.45 6.98 8.96 -92.71 -0.83 6.15 16 21 C 0.04 0.91 7.00 39.80 0.28 1.19 16 22 C 0.55 12.27 7.93 70.01 0.56 12.83 16 23 O -0.50 -13.86 16.64 19.48 0.32 -13.54 16 24 O -0.35 -5.80 10.57 -57.93 -0.61 -6.42 16 25 C 0.03 0.30 10.57 113.37 1.20 1.50 16 26 C -0.04 -1.19 10.53 22.46 0.24 -0.96 16 27 C -0.21 -7.38 6.16 -21.26 -0.13 -7.51 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.15 7.59 -2.39 -0.02 1.13 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 3.51 6.58 -2.38 -0.02 3.50 16 32 H 0.04 1.45 7.44 -2.39 -0.02 1.43 16 33 H 0.00 -0.18 8.05 -2.38 -0.02 -0.20 16 34 H -0.02 -1.11 8.12 -2.38 -0.02 -1.13 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.17 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -68.04 359.47 1.86 -66.18 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.29 Total: 6.98 kcal Atomic # 6 Polarization: 29.65 SS G_CDS: 7.62 Total: 37.27 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -7.71 Total: -136.67 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.29 Total: -19.95 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 17 Polarization: 1.21 SS G_CDS: -0.08 Total: 1.13 kcal Total: -68.04 1.86 -66.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.255 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds