Wall clock time and date at job start Tue Mar 31 2020 21:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21266 * 119.99796 * 2 1 4 4 N 1.34775 * 119.99511 * 179.97438 * 2 1 3 5 5 C 1.39019 * 119.99770 * 180.02562 * 4 2 1 6 6 N 1.32249 * 118.85548 * 1.30759 * 5 4 2 7 7 C 1.32859 * 120.58858 * 180.02562 * 6 5 4 8 8 N 1.37211 * 134.84625 * 180.02562 * 7 6 5 9 9 H 0.96992 * 126.28232 * 359.97156 * 8 7 6 10 10 C 1.36403 * 107.43492 * 179.97438 * 8 7 6 11 11 N 1.30119 * 109.97698 * 359.97438 * 10 8 7 12 12 C 1.35533 * 109.45257 * 0.02562 * 11 10 8 13 13 C 1.40510 * 134.59282 * 180.02562 * 12 11 10 14 14 N 1.38566 * 120.72478 * 359.94927 * 13 12 11 15 15 C 1.38437 * 120.00743 * 179.79590 * 14 13 12 16 16 C 1.38955 * 119.99436 * 60.17666 * 15 14 13 17 17 H 1.07991 * 120.00052 * 199.84299 * 16 15 14 18 18 C 1.40863 * 119.99850 * 19.84941 * 16 15 14 19 19 N 1.30324 * 120.00219 * 10.19095 * 18 16 15 20 20 Si 1.86799 * 119.99937 * 190.19147 * 18 16 15 21 21 H 1.48502 * 109.47261 * 89.99636 * 20 18 16 22 22 H 1.48502 * 109.47173 * 209.99786 * 20 18 16 23 23 H 1.48500 * 109.47255 * 330.00005 * 20 18 16 24 24 C 1.41126 * 120.00503 * 239.90756 * 15 14 13 25 25 C 1.43195 * 120.00040 * 182.54777 * 24 15 14 26 26 N 8.49391 * 109.62506 * 173.78608 * 2 1 3 27 27 C 1.43204 * 119.99731 * 2.55139 * 24 15 14 28 28 N 8.24748 * 133.50048 * 150.59604 * 2 1 3 29 29 N 1.32602 * 118.85813 * 181.56367 * 5 4 2 30 30 H 1.08997 * 109.47154 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46968 * 300.00497 * 1 2 3 32 32 H 1.09000 * 109.47119 * 59.99691 * 1 2 3 33 33 H 0.96998 * 120.00249 * 359.97438 * 4 2 1 34 34 H 1.08000 * 125.01425 * 180.02562 * 10 8 7 35 35 H 0.97010 * 120.00012 * 359.80330 * 14 13 12 36 36 H 0.97004 * 120.00038 * 184.98306 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5710 -1.1673 0.0011 6 7 4.2093 -0.0093 0.0275 7 6 5.5373 0.0308 0.0284 8 7 6.4751 1.0321 0.0517 9 1 6.2966 1.9852 0.0735 10 6 7.7044 0.4412 0.0385 11 7 7.5751 -0.8532 0.0093 12 6 6.2586 -1.1753 0.0013 13 6 5.5382 -2.3813 -0.0258 14 7 6.1979 -3.5996 -0.0533 15 6 5.4733 -4.7790 -0.0756 16 6 4.5964 -5.0358 -1.1224 17 1 3.8103 -5.7663 -1.0013 18 6 4.7329 -4.3435 -2.3415 19 7 5.7900 -3.6137 -2.5616 20 14 3.3989 -4.4715 -3.6428 21 1 2.3959 -3.3970 -3.4308 22 1 4.0056 -4.3235 -4.9900 23 1 2.7343 -5.7957 -3.5419 24 6 5.6295 -5.7228 0.9619 25 6 4.9213 -6.9664 0.9111 26 7 4.3599 -7.9535 0.8660 27 6 6.4961 -5.4369 2.0655 28 7 7.1843 -5.2118 2.9372 29 7 4.2110 -2.3283 -0.0301 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6958 -2.0072 0.0013 34 1 8.6462 0.9696 0.0513 35 1 7.1676 -3.6260 -0.0569 36 1 5.8513 -3.0800 -3.3693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:02 Heat of formation + Delta-G solvation = 146.975785 kcal Electronic energy + Delta-G solvation = -28463.715825 eV Core-core repulsion = 24371.126283 eV Total energy + Delta-G solvation = -4092.589542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09724 -40.06510 -38.71735 -37.33610 -35.42056 -34.74052 -34.39630 -33.85389 -32.73104 -31.61972 -30.70688 -29.86340 -27.96069 -27.12217 -24.10020 -23.31690 -21.58087 -21.31311 -20.57755 -19.44948 -19.01720 -17.80355 -17.27063 -16.86826 -16.39707 -16.14008 -15.82195 -15.66647 -15.40240 -15.09191 -14.25843 -14.13853 -13.77720 -13.74558 -13.38711 -12.80692 -12.76242 -12.59320 -12.39665 -12.25347 -11.89693 -11.71065 -11.65720 -11.54542 -11.46615 -11.36004 -11.01238 -10.90027 -10.59167 -10.22591 -10.16322 -10.06401 -9.78237 -9.53216 -8.74051 -8.40905 -8.14742 -7.71413 -7.01275 -5.40876 1.23835 1.75285 2.26663 2.51130 2.64214 2.68685 2.75084 2.87147 3.04578 3.17363 3.38340 3.66096 3.91723 4.09542 4.25892 4.33957 4.41979 4.48267 4.55561 4.88237 4.91439 5.10855 5.18407 5.23619 5.26769 5.52289 5.65109 5.73434 5.95414 6.19212 6.34547 6.39945 6.75865 7.03884 7.10386 7.12918 7.28004 7.50453 7.68616 7.75089 7.98123 8.15846 8.17784 8.39318 8.85904 8.98789 9.15133 9.19139 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.008581 B = 0.005548 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.111452 B = 5045.267113 C = 6131.776119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.505 3.495 3 O -0.480 6.480 4 N -0.636 5.636 5 C 0.594 3.406 6 N -0.560 5.560 7 C 0.322 3.678 8 N -0.583 5.583 9 H 0.425 0.575 10 C 0.225 3.775 11 N -0.446 5.446 12 C -0.124 4.124 13 C 0.568 3.432 14 N -0.604 5.604 15 C 0.373 3.627 16 C -0.341 4.341 17 H 0.112 0.888 18 C 0.077 3.923 19 N -0.723 5.723 20 Si 0.923 3.077 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.247 1.247 24 C -0.310 4.310 25 C 0.328 3.672 26 N -0.534 5.534 27 C 0.308 3.692 28 N -0.532 5.532 29 N -0.587 5.587 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.425 0.575 34 H 0.219 0.781 35 H 0.421 0.579 36 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 12.570 -4.848 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.291 3.709 3 O -0.348 6.348 4 N -0.287 5.287 5 C 0.234 3.766 6 N -0.293 5.293 7 C 0.079 3.921 8 N -0.199 5.199 9 H 0.264 0.736 10 C -0.063 4.063 11 N -0.164 5.164 12 C -0.252 4.252 13 C 0.315 3.685 14 N -0.226 5.226 15 C 0.270 3.730 16 C -0.368 4.368 17 H 0.130 0.870 18 C -0.154 4.154 19 N -0.342 5.342 20 Si 0.744 3.256 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.170 1.170 24 C -0.329 4.329 25 C 0.020 3.980 26 N -0.217 5.217 27 C 0.000 4.000 28 N -0.214 5.214 29 N -0.321 5.321 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.263 0.737 34 H 0.235 0.765 35 H 0.260 0.740 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.064 11.531 -3.779 13.149 hybrid contribution -0.128 1.085 -1.013 1.490 sum -5.192 12.616 -4.792 14.460 Atomic orbital electron populations 1.21841 0.90532 1.04745 1.05444 1.21016 0.90519 0.83051 0.76332 1.90815 1.69779 1.30348 1.43901 1.43292 1.02277 1.11267 1.71863 1.18498 0.85690 0.83036 0.89391 1.67020 1.05237 1.27850 1.29210 1.18385 0.88454 0.87641 0.97600 1.42642 1.05322 1.08871 1.63090 0.73595 1.25177 0.88488 0.89115 1.03541 1.70121 1.16880 1.12063 1.17382 1.19476 0.91571 0.93924 1.20243 1.16871 0.85724 0.83317 0.82605 1.41418 1.08794 1.01075 1.71354 1.16708 0.85984 0.81264 0.89006 1.20163 1.09631 1.13968 0.93078 0.87000 1.26505 0.96230 0.92332 1.00342 1.69478 1.24114 1.14349 1.26242 0.85975 0.80251 0.81401 0.77960 1.18069 1.19417 1.16993 1.12801 1.22262 0.96294 1.01512 1.24630 0.90847 0.90982 0.91562 1.81079 1.16148 1.13161 1.11283 1.25098 0.91196 0.92167 0.91519 1.80949 1.16744 1.10484 1.13212 1.67406 1.07164 1.26818 1.30693 0.90092 0.88415 0.88481 0.73676 0.76508 0.73967 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.39 36.01 0.37 -0.88 16 2 C 0.51 6.76 7.90 -10.98 -0.09 6.67 16 3 O -0.48 -8.43 15.28 5.57 0.09 -8.35 16 4 N -0.64 -9.10 5.40 -13.04 -0.07 -9.17 16 5 C 0.59 10.93 8.37 -322.08 -2.70 8.23 16 6 N -0.56 -10.69 7.87 -13.13 -0.10 -10.80 16 7 C 0.32 5.80 8.51 -155.81 -1.33 4.48 16 8 N -0.58 -7.67 6.20 -13.23 -0.08 -7.76 16 9 H 0.43 4.15 8.96 -40.82 -0.37 3.79 16 10 C 0.22 2.79 12.98 -89.43 -1.16 1.63 16 11 N -0.45 -7.60 11.28 -11.81 -0.13 -7.74 16 12 C -0.12 -2.38 7.16 -84.50 -0.61 -2.98 16 13 C 0.57 11.41 5.94 -154.56 -0.92 10.49 16 14 N -0.60 -12.20 3.30 -9.44 -0.03 -12.23 16 15 C 0.37 7.81 5.54 -83.52 -0.46 7.34 16 16 C -0.34 -6.90 7.74 -38.32 -0.30 -7.20 16 17 H 0.11 2.28 7.06 -52.49 -0.37 1.91 16 18 C 0.08 1.46 4.77 -17.20 -0.08 1.38 16 19 N -0.72 -14.03 10.94 55.60 0.61 -13.42 16 20 Si 0.92 14.83 29.58 -169.99 -5.03 9.80 16 21 H -0.26 -4.08 7.11 56.52 0.40 -3.68 16 22 H -0.27 -4.32 7.11 56.52 0.40 -3.92 16 23 H -0.25 -3.99 7.11 56.52 0.40 -3.59 16 24 C -0.31 -6.82 5.89 -104.95 -0.62 -7.43 16 25 C 0.33 7.44 13.92 -22.46 -0.31 7.12 16 26 N -0.53 -12.55 18.54 41.86 0.78 -11.77 16 27 C 0.31 7.06 14.81 -22.56 -0.33 6.72 16 28 N -0.53 -12.73 18.52 41.73 0.77 -11.96 16 29 N -0.59 -11.42 8.73 -12.82 -0.11 -11.54 16 30 H 0.08 0.43 7.91 -51.93 -0.41 0.01 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.42 4.85 8.65 -40.82 -0.35 4.50 16 34 H 0.22 1.49 8.06 -52.49 -0.42 1.06 16 35 H 0.42 8.44 8.84 -40.82 -0.36 8.08 16 36 H 0.30 5.50 8.29 -40.82 -0.34 5.16 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -31.48 344.96 -8.91 -40.39 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -2.26 Total: 13.77 kcal Atomic # 6 Polarization: 44.10 SS G_CDS: -8.53 Total: 35.57 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: 1.63 Total: -96.37 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 14.83 SS G_CDS: -5.03 Total: 9.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.48 -8.91 -40.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.361 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds