Wall clock time and date at job start Tue Mar 31 2020 21:17:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 O 1.21266 * 119.99796 * 2 1
4 4 N 1.34775 * 119.99511 * 179.97438 * 2 1 3
5 5 C 1.39019 * 119.99770 * 180.02562 * 4 2 1
6 6 N 1.32249 * 118.85548 * 1.30759 * 5 4 2
7 7 C 1.32859 * 120.58858 * 180.02562 * 6 5 4
8 8 N 1.37211 * 134.84625 * 180.02562 * 7 6 5
9 9 H 0.96992 * 126.28232 * 359.97156 * 8 7 6
10 10 C 1.36403 * 107.43492 * 179.97438 * 8 7 6
11 11 N 1.30119 * 109.97698 * 359.97438 * 10 8 7
12 12 C 1.35533 * 109.45257 * 0.02562 * 11 10 8
13 13 C 1.40510 * 134.59282 * 180.02562 * 12 11 10
14 14 N 1.38566 * 120.72478 * 359.94927 * 13 12 11
15 15 C 1.38437 * 120.00743 * 179.79590 * 14 13 12
16 16 C 1.38955 * 119.99436 * 60.17666 * 15 14 13
17 17 H 1.07991 * 120.00052 * 199.84299 * 16 15 14
18 18 C 1.40863 * 119.99850 * 19.84941 * 16 15 14
19 19 N 1.30324 * 120.00219 * 10.19095 * 18 16 15
20 20 Si 1.86799 * 119.99937 * 190.19147 * 18 16 15
21 21 H 1.48502 * 109.47261 * 89.99636 * 20 18 16
22 22 H 1.48502 * 109.47173 * 209.99786 * 20 18 16
23 23 H 1.48500 * 109.47255 * 330.00005 * 20 18 16
24 24 C 1.41126 * 120.00503 * 239.90756 * 15 14 13
25 25 C 1.43195 * 120.00040 * 182.54777 * 24 15 14
26 26 N 8.49391 * 109.62506 * 173.78608 * 2 1 3
27 27 C 1.43204 * 119.99731 * 2.55139 * 24 15 14
28 28 N 8.24748 * 133.50048 * 150.59604 * 2 1 3
29 29 N 1.32602 * 118.85813 * 181.56367 * 5 4 2
30 30 H 1.08997 * 109.47154 * 180.02562 * 1 2 3
31 31 H 1.09007 * 109.46968 * 300.00497 * 1 2 3
32 32 H 1.09000 * 109.47119 * 59.99691 * 1 2 3
33 33 H 0.96998 * 120.00249 * 359.97438 * 4 2 1
34 34 H 1.08000 * 125.01425 * 180.02562 * 10 8 7
35 35 H 0.97010 * 120.00012 * 359.80330 * 14 13 12
36 36 H 0.97004 * 120.00038 * 184.98306 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.1133 1.0502 0.0000
4 7 2.1808 -1.1672 0.0005
5 6 3.5710 -1.1673 0.0011
6 7 4.2093 -0.0093 0.0275
7 6 5.5373 0.0308 0.0284
8 7 6.4751 1.0321 0.0517
9 1 6.2966 1.9852 0.0735
10 6 7.7044 0.4412 0.0385
11 7 7.5751 -0.8532 0.0093
12 6 6.2586 -1.1753 0.0013
13 6 5.5382 -2.3813 -0.0258
14 7 6.1979 -3.5996 -0.0533
15 6 5.4733 -4.7790 -0.0756
16 6 4.5964 -5.0358 -1.1224
17 1 3.8103 -5.7663 -1.0013
18 6 4.7329 -4.3435 -2.3415
19 7 5.7900 -3.6137 -2.5616
20 14 3.3989 -4.4715 -3.6428
21 1 2.3959 -3.3970 -3.4308
22 1 4.0056 -4.3235 -4.9900
23 1 2.7343 -5.7957 -3.5419
24 6 5.6295 -5.7228 0.9619
25 6 4.9213 -6.9664 0.9111
26 7 4.3599 -7.9535 0.8660
27 6 6.4961 -5.4369 2.0655
28 7 7.1843 -5.2118 2.9372
29 7 4.2110 -2.3283 -0.0301
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.6958 -2.0072 0.0013
34 1 8.6462 0.9696 0.0513
35 1 7.1676 -3.6260 -0.0569
36 1 5.8513 -3.0800 -3.3693
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001169079196.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:17:02
Heat of formation + Delta-G solvation = 128.920687 kcal
Electronic energy + Delta-G solvation = -28464.498753 eV
Core-core repulsion = 24371.126283 eV
Total energy + Delta-G solvation = -4093.372470 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 338.098 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.34785 -41.22623 -40.06460 -38.78370 -37.13538 -36.54310 -35.74744 -35.20172
-34.14025 -32.92292 -32.05421 -30.89593 -29.19371 -28.75413 -25.41628 -24.59940
-23.08084 -22.47221 -21.82296 -20.77337 -20.53519 -19.15031 -18.74804 -18.13868
-17.83498 -17.37135 -17.11122 -17.04650 -16.71423 -16.17799 -15.64510 -15.21274
-15.16414 -14.80948 -14.63196 -14.54462 -14.35019 -13.90139 -13.53214 -13.44402
-13.37811 -13.33216 -13.09194 -13.06191 -12.84711 -12.76237 -12.64330 -12.52221
-12.02460 -11.57087 -11.46193 -11.34267 -10.97474 -10.82779 -10.16249 -9.77697
-9.67416 -9.14815 -8.45948 -7.09377 -0.06105 0.32083 0.79293 1.34301
1.37151 1.49560 1.55028 1.59801 1.91821 2.01255 2.03842 2.08705
2.22838 2.26477 2.57805 2.71341 3.08757 3.27379 3.43402 3.47005
3.60924 3.83614 3.95940 4.19883 4.38411 4.56637 4.65094 4.66531
4.72323 4.76137 5.09551 5.21181 5.39131 5.50224 5.62791 5.83683
6.03692 6.10618 6.19356 6.43779 6.62031 6.80709 6.87674 7.16097
7.20895 7.36782 7.51748 7.68710
Molecular weight = 338.10amu
Principal moments of inertia in cm(-1)
A = 0.008581 B = 0.005548 C = 0.004565
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3262.111452 B = 5045.267113 C = 6131.776119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.501 3.499
3 O -0.527 6.527
4 N -0.629 5.629
5 C 0.574 3.426
6 N -0.571 5.571
7 C 0.300 3.700
8 N -0.568 5.568
9 H 0.442 0.558
10 C 0.261 3.739
11 N -0.491 5.491
12 C -0.141 4.141
13 C 0.548 3.452
14 N -0.608 5.608
15 C 0.366 3.634
16 C -0.334 4.334
17 H 0.110 0.890
18 C 0.052 3.948
19 N -0.728 5.728
20 Si 0.975 3.025
21 H -0.251 1.251
22 H -0.265 1.265
23 H -0.246 1.246
24 C -0.325 4.325
25 C 0.333 3.667
26 N -0.554 5.554
27 C 0.314 3.686
28 N -0.558 5.558
29 N -0.596 5.596
30 H 0.108 0.892
31 H 0.112 0.888
32 H 0.112 0.888
33 H 0.436 0.564
34 H 0.277 0.723
35 H 0.417 0.583
36 H 0.307 0.693
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.356 14.254 -6.155 16.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.289 3.711
3 O -0.399 6.399
4 N -0.282 5.282
5 C 0.214 3.786
6 N -0.304 5.304
7 C 0.055 3.945
8 N -0.186 5.186
9 H 0.284 0.716
10 C -0.026 4.026
11 N -0.210 5.210
12 C -0.267 4.267
13 C 0.296 3.704
14 N -0.231 5.231
15 C 0.263 3.737
16 C -0.360 4.360
17 H 0.128 0.872
18 C -0.179 4.179
19 N -0.346 5.346
20 Si 0.793 3.207
21 H -0.175 1.175
22 H -0.189 1.189
23 H -0.169 1.169
24 C -0.344 4.344
25 C 0.026 3.974
26 N -0.237 5.237
27 C 0.009 3.991
28 N -0.242 5.242
29 N -0.330 5.330
30 H 0.127 0.873
31 H 0.130 0.870
32 H 0.130 0.870
33 H 0.277 0.723
34 H 0.293 0.707
35 H 0.256 0.744
36 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -6.007 13.238 -5.072 15.397
hybrid contribution 0.229 0.756 -0.694 1.052
sum -5.778 13.994 -5.766 16.201
Atomic orbital electron populations
1.21905 0.85507 1.07085 1.06742 1.22174 0.92599 0.81860 0.74432
1.90783 1.71198 1.31814 1.46104 1.43529 1.00784 1.12497 1.71373
1.18983 0.87238 0.82720 0.89683 1.67115 1.05860 1.28183 1.29275
1.18762 0.88620 0.88808 0.98261 1.42729 1.04578 1.09216 1.62052
0.71557 1.26418 0.89733 0.88105 0.98374 1.70142 1.15971 1.14470
1.20441 1.19623 0.92721 0.93907 1.20488 1.17095 0.86281 0.83547
0.83510 1.41277 1.08421 1.00970 1.72394 1.16732 0.86512 0.81571
0.88896 1.20342 1.08896 1.13382 0.93413 0.87218 1.27102 0.97769
0.91788 1.01219 1.69499 1.24876 1.13680 1.26580 0.85215 0.78138
0.81412 0.75916 1.17472 1.18907 1.16902 1.12855 1.22961 0.96611
1.01958 1.24721 0.90572 0.90926 0.91140 1.81063 1.17096 1.13633
1.11953 1.25249 0.90952 0.91591 0.91347 1.80925 1.17876 1.11319
1.14033 1.67399 1.07226 1.27500 1.30893 0.87291 0.86982 0.87002
0.72316 0.70731 0.74435 0.88095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.88 10.39 71.24 0.74 -1.14 16
2 C 0.50 12.81 7.90 87.66 0.69 13.50 16
3 O -0.53 -18.35 15.28 -2.99 -0.05 -18.40 16
4 N -0.63 -17.55 5.40 -313.56 -1.69 -19.25 16
5 C 0.57 21.17 8.37 261.23 2.19 23.35 16
6 N -0.57 -21.81 7.87 -195.46 -1.54 -23.35 16
7 C 0.30 10.64 8.51 133.88 1.14 11.78 16
8 N -0.57 -13.80 6.20 -195.77 -1.21 -15.01 16
9 H 0.44 7.54 8.96 -92.71 -0.83 6.71 16
10 C 0.26 5.75 12.98 179.93 2.34 8.09 16
11 N -0.49 -16.25 11.28 -191.28 -2.16 -18.40 16
12 C -0.14 -5.37 7.16 39.69 0.28 -5.09 16
13 C 0.55 22.33 5.94 133.42 0.79 23.12 16
14 N -0.61 -25.10 3.30 -183.77 -0.61 -25.70 16
15 C 0.37 15.58 5.54 38.98 0.22 15.79 16
16 C -0.33 -13.48 7.74 23.08 0.18 -13.30 16
17 H 0.11 4.44 7.06 -2.92 -0.02 4.42 16
18 C 0.05 1.92 4.77 85.56 0.41 2.33 16
19 N -0.73 -27.91 10.94 21.98 0.24 -27.67 16
20 Si 0.97 28.96 29.58 68.60 2.03 30.99 16
21 H -0.25 -7.23 7.11 99.48 0.71 -6.52 16
22 H -0.26 -7.67 7.11 99.48 0.71 -6.96 16
23 H -0.25 -7.28 7.11 99.48 0.71 -6.57 16
24 C -0.32 -14.58 5.89 -20.08 -0.12 -14.70 16
25 C 0.33 15.32 13.92 88.32 1.23 16.55 16
26 N -0.55 -26.19 18.54 19.01 0.35 -25.84 16
27 C 0.31 14.80 14.81 88.37 1.31 16.11 16
28 N -0.56 -27.33 18.52 18.97 0.35 -26.98 16
29 N -0.60 -23.43 8.73 -194.47 -1.70 -25.13 16
30 H 0.11 0.74 7.91 -2.39 -0.02 0.72 16
31 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16
32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16
33 H 0.44 9.48 8.65 -92.71 -0.80 8.68 16
34 H 0.28 2.35 8.06 -2.91 -0.02 2.33 16
35 H 0.42 17.31 8.84 -92.70 -0.82 16.49 16
36 H 0.31 10.95 8.29 -92.71 -0.77 10.18 16
Total: -1.00 -70.84 344.96 4.21 -66.63
By element:
Atomic # 1 Polarization: 32.90 SS G_CDS: -1.20 Total: 31.70 kcal
Atomic # 6 Polarization: 85.00 SS G_CDS: 11.39 Total: 96.40 kcal
Atomic # 7 Polarization: -199.36 SS G_CDS: -7.96 Total: -207.32 kcal
Atomic # 8 Polarization: -18.35 SS G_CDS: -0.05 Total: -18.40 kcal
Atomic # 14 Polarization: 28.96 SS G_CDS: 2.03 Total: 30.99 kcal
Total: -70.84 4.21 -66.63 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169079196.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 195.550 kcal
(2) G-P(sol) polarization free energy of solvation -70.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.708 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) 128.921 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds