Wall clock time and date at job start Tue Mar 31 2020 21:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21266 * 119.99796 * 2 1 4 4 N 1.34775 * 119.99511 * 179.97438 * 2 1 3 5 5 C 1.39019 * 119.99770 * 180.02562 * 4 2 1 6 6 N 1.32249 * 118.85548 * 1.30759 * 5 4 2 7 7 C 1.32859 * 120.58858 * 180.02562 * 6 5 4 8 8 N 1.37211 * 134.84625 * 180.02562 * 7 6 5 9 9 H 0.96992 * 126.28232 * 359.97156 * 8 7 6 10 10 C 1.36403 * 107.43492 * 179.97438 * 8 7 6 11 11 N 1.30119 * 109.97698 * 359.97438 * 10 8 7 12 12 C 1.35533 * 109.45257 * 0.02562 * 11 10 8 13 13 C 1.40510 * 134.59282 * 180.02562 * 12 11 10 14 14 N 1.38566 * 120.72478 * 359.94927 * 13 12 11 15 15 C 1.38437 * 120.00743 * 179.79590 * 14 13 12 16 16 C 1.38955 * 119.99436 * 60.17666 * 15 14 13 17 17 H 1.07991 * 120.00052 * 199.84299 * 16 15 14 18 18 C 1.40863 * 119.99850 * 19.84941 * 16 15 14 19 19 N 1.30324 * 120.00219 * 10.19095 * 18 16 15 20 20 Si 1.86799 * 119.99937 * 190.19147 * 18 16 15 21 21 H 1.48502 * 109.47261 * 89.99636 * 20 18 16 22 22 H 1.48502 * 109.47173 * 209.99786 * 20 18 16 23 23 H 1.48500 * 109.47255 * 330.00005 * 20 18 16 24 24 C 1.41126 * 120.00503 * 239.90756 * 15 14 13 25 25 C 1.43195 * 120.00040 * 182.54777 * 24 15 14 26 26 N 8.49391 * 109.62506 * 173.78608 * 2 1 3 27 27 C 1.43204 * 119.99731 * 2.55139 * 24 15 14 28 28 N 8.24748 * 133.50048 * 150.59604 * 2 1 3 29 29 N 1.32602 * 118.85813 * 181.56367 * 5 4 2 30 30 H 1.08997 * 109.47154 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46968 * 300.00497 * 1 2 3 32 32 H 1.09000 * 109.47119 * 59.99691 * 1 2 3 33 33 H 0.96998 * 120.00249 * 359.97438 * 4 2 1 34 34 H 1.08000 * 125.01425 * 180.02562 * 10 8 7 35 35 H 0.97010 * 120.00012 * 359.80330 * 14 13 12 36 36 H 0.97004 * 120.00038 * 184.98306 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5710 -1.1673 0.0011 6 7 4.2093 -0.0093 0.0275 7 6 5.5373 0.0308 0.0284 8 7 6.4751 1.0321 0.0517 9 1 6.2966 1.9852 0.0735 10 6 7.7044 0.4412 0.0385 11 7 7.5751 -0.8532 0.0093 12 6 6.2586 -1.1753 0.0013 13 6 5.5382 -2.3813 -0.0258 14 7 6.1979 -3.5996 -0.0533 15 6 5.4733 -4.7790 -0.0756 16 6 4.5964 -5.0358 -1.1224 17 1 3.8103 -5.7663 -1.0013 18 6 4.7329 -4.3435 -2.3415 19 7 5.7900 -3.6137 -2.5616 20 14 3.3989 -4.4715 -3.6428 21 1 2.3959 -3.3970 -3.4308 22 1 4.0056 -4.3235 -4.9900 23 1 2.7343 -5.7957 -3.5419 24 6 5.6295 -5.7228 0.9619 25 6 4.9213 -6.9664 0.9111 26 7 4.3599 -7.9535 0.8660 27 6 6.4961 -5.4369 2.0655 28 7 7.1843 -5.2118 2.9372 29 7 4.2110 -2.3283 -0.0301 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6958 -2.0072 0.0013 34 1 8.6462 0.9696 0.0513 35 1 7.1676 -3.6260 -0.0569 36 1 5.8513 -3.0800 -3.3693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:02 Heat of formation + Delta-G solvation = 128.920687 kcal Electronic energy + Delta-G solvation = -28464.498753 eV Core-core repulsion = 24371.126283 eV Total energy + Delta-G solvation = -4093.372470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.34785 -41.22623 -40.06460 -38.78370 -37.13538 -36.54310 -35.74744 -35.20172 -34.14025 -32.92292 -32.05421 -30.89593 -29.19371 -28.75413 -25.41628 -24.59940 -23.08084 -22.47221 -21.82296 -20.77337 -20.53519 -19.15031 -18.74804 -18.13868 -17.83498 -17.37135 -17.11122 -17.04650 -16.71423 -16.17799 -15.64510 -15.21274 -15.16414 -14.80948 -14.63196 -14.54462 -14.35019 -13.90139 -13.53214 -13.44402 -13.37811 -13.33216 -13.09194 -13.06191 -12.84711 -12.76237 -12.64330 -12.52221 -12.02460 -11.57087 -11.46193 -11.34267 -10.97474 -10.82779 -10.16249 -9.77697 -9.67416 -9.14815 -8.45948 -7.09377 -0.06105 0.32083 0.79293 1.34301 1.37151 1.49560 1.55028 1.59801 1.91821 2.01255 2.03842 2.08705 2.22838 2.26477 2.57805 2.71341 3.08757 3.27379 3.43402 3.47005 3.60924 3.83614 3.95940 4.19883 4.38411 4.56637 4.65094 4.66531 4.72323 4.76137 5.09551 5.21181 5.39131 5.50224 5.62791 5.83683 6.03692 6.10618 6.19356 6.43779 6.62031 6.80709 6.87674 7.16097 7.20895 7.36782 7.51748 7.68710 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.008581 B = 0.005548 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.111452 B = 5045.267113 C = 6131.776119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.501 3.499 3 O -0.527 6.527 4 N -0.629 5.629 5 C 0.574 3.426 6 N -0.571 5.571 7 C 0.300 3.700 8 N -0.568 5.568 9 H 0.442 0.558 10 C 0.261 3.739 11 N -0.491 5.491 12 C -0.141 4.141 13 C 0.548 3.452 14 N -0.608 5.608 15 C 0.366 3.634 16 C -0.334 4.334 17 H 0.110 0.890 18 C 0.052 3.948 19 N -0.728 5.728 20 Si 0.975 3.025 21 H -0.251 1.251 22 H -0.265 1.265 23 H -0.246 1.246 24 C -0.325 4.325 25 C 0.333 3.667 26 N -0.554 5.554 27 C 0.314 3.686 28 N -0.558 5.558 29 N -0.596 5.596 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.436 0.564 34 H 0.277 0.723 35 H 0.417 0.583 36 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 14.254 -6.155 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.289 3.711 3 O -0.399 6.399 4 N -0.282 5.282 5 C 0.214 3.786 6 N -0.304 5.304 7 C 0.055 3.945 8 N -0.186 5.186 9 H 0.284 0.716 10 C -0.026 4.026 11 N -0.210 5.210 12 C -0.267 4.267 13 C 0.296 3.704 14 N -0.231 5.231 15 C 0.263 3.737 16 C -0.360 4.360 17 H 0.128 0.872 18 C -0.179 4.179 19 N -0.346 5.346 20 Si 0.793 3.207 21 H -0.175 1.175 22 H -0.189 1.189 23 H -0.169 1.169 24 C -0.344 4.344 25 C 0.026 3.974 26 N -0.237 5.237 27 C 0.009 3.991 28 N -0.242 5.242 29 N -0.330 5.330 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.277 0.723 34 H 0.293 0.707 35 H 0.256 0.744 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.007 13.238 -5.072 15.397 hybrid contribution 0.229 0.756 -0.694 1.052 sum -5.778 13.994 -5.766 16.201 Atomic orbital electron populations 1.21905 0.85507 1.07085 1.06742 1.22174 0.92599 0.81860 0.74432 1.90783 1.71198 1.31814 1.46104 1.43529 1.00784 1.12497 1.71373 1.18983 0.87238 0.82720 0.89683 1.67115 1.05860 1.28183 1.29275 1.18762 0.88620 0.88808 0.98261 1.42729 1.04578 1.09216 1.62052 0.71557 1.26418 0.89733 0.88105 0.98374 1.70142 1.15971 1.14470 1.20441 1.19623 0.92721 0.93907 1.20488 1.17095 0.86281 0.83547 0.83510 1.41277 1.08421 1.00970 1.72394 1.16732 0.86512 0.81571 0.88896 1.20342 1.08896 1.13382 0.93413 0.87218 1.27102 0.97769 0.91788 1.01219 1.69499 1.24876 1.13680 1.26580 0.85215 0.78138 0.81412 0.75916 1.17472 1.18907 1.16902 1.12855 1.22961 0.96611 1.01958 1.24721 0.90572 0.90926 0.91140 1.81063 1.17096 1.13633 1.11953 1.25249 0.90952 0.91591 0.91347 1.80925 1.17876 1.11319 1.14033 1.67399 1.07226 1.27500 1.30893 0.87291 0.86982 0.87002 0.72316 0.70731 0.74435 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.39 71.24 0.74 -1.14 16 2 C 0.50 12.81 7.90 87.66 0.69 13.50 16 3 O -0.53 -18.35 15.28 -2.99 -0.05 -18.40 16 4 N -0.63 -17.55 5.40 -313.56 -1.69 -19.25 16 5 C 0.57 21.17 8.37 261.23 2.19 23.35 16 6 N -0.57 -21.81 7.87 -195.46 -1.54 -23.35 16 7 C 0.30 10.64 8.51 133.88 1.14 11.78 16 8 N -0.57 -13.80 6.20 -195.77 -1.21 -15.01 16 9 H 0.44 7.54 8.96 -92.71 -0.83 6.71 16 10 C 0.26 5.75 12.98 179.93 2.34 8.09 16 11 N -0.49 -16.25 11.28 -191.28 -2.16 -18.40 16 12 C -0.14 -5.37 7.16 39.69 0.28 -5.09 16 13 C 0.55 22.33 5.94 133.42 0.79 23.12 16 14 N -0.61 -25.10 3.30 -183.77 -0.61 -25.70 16 15 C 0.37 15.58 5.54 38.98 0.22 15.79 16 16 C -0.33 -13.48 7.74 23.08 0.18 -13.30 16 17 H 0.11 4.44 7.06 -2.92 -0.02 4.42 16 18 C 0.05 1.92 4.77 85.56 0.41 2.33 16 19 N -0.73 -27.91 10.94 21.98 0.24 -27.67 16 20 Si 0.97 28.96 29.58 68.60 2.03 30.99 16 21 H -0.25 -7.23 7.11 99.48 0.71 -6.52 16 22 H -0.26 -7.67 7.11 99.48 0.71 -6.96 16 23 H -0.25 -7.28 7.11 99.48 0.71 -6.57 16 24 C -0.32 -14.58 5.89 -20.08 -0.12 -14.70 16 25 C 0.33 15.32 13.92 88.32 1.23 16.55 16 26 N -0.55 -26.19 18.54 19.01 0.35 -25.84 16 27 C 0.31 14.80 14.81 88.37 1.31 16.11 16 28 N -0.56 -27.33 18.52 18.97 0.35 -26.98 16 29 N -0.60 -23.43 8.73 -194.47 -1.70 -25.13 16 30 H 0.11 0.74 7.91 -2.39 -0.02 0.72 16 31 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.44 9.48 8.65 -92.71 -0.80 8.68 16 34 H 0.28 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.42 17.31 8.84 -92.70 -0.82 16.49 16 36 H 0.31 10.95 8.29 -92.71 -0.77 10.18 16 Total: -1.00 -70.84 344.96 4.21 -66.63 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -1.20 Total: 31.70 kcal Atomic # 6 Polarization: 85.00 SS G_CDS: 11.39 Total: 96.40 kcal Atomic # 7 Polarization: -199.36 SS G_CDS: -7.96 Total: -207.32 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.05 Total: -18.40 kcal Atomic # 14 Polarization: 28.96 SS G_CDS: 2.03 Total: 30.99 kcal Total: -70.84 4.21 -66.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.550 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds