Wall clock time and date at job start Tue Mar 31 2020 20:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34923 * 116.99774 * 2 1 4 4 O 1.21682 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.46124 * 120.00371 * 180.02562 * 3 2 1 6 6 C 1.39552 * 127.57990 * 0.02562 * 5 3 2 7 7 N 1.32197 * 109.46353 * 179.97438 * 6 5 3 8 8 C 1.32376 * 112.34016 * 0.02562 * 7 6 5 9 9 N 1.37721 * 134.02392 * 180.27326 * 8 7 6 10 10 H 0.96998 * 120.21739 * 359.93971 * 9 8 7 11 11 C 1.34938 * 119.56040 * 180.18623 * 9 8 7 12 12 N 1.37057 * 118.90891 * 179.77528 * 11 9 8 13 13 C 1.38622 * 120.00015 * 357.63019 * 12 11 9 14 14 C 1.38878 * 120.00116 * 299.88212 * 13 12 11 15 15 H 1.07994 * 120.00521 * 154.29406 * 14 13 12 16 16 C 1.40912 * 119.99513 * 334.29302 * 14 13 12 17 17 N 1.30301 * 119.99684 * 164.88469 * 16 14 13 18 18 Si 1.86800 * 120.00291 * 344.88005 * 16 14 13 19 19 H 1.48497 * 109.47192 * 87.79855 * 18 16 14 20 20 H 1.48502 * 109.46892 * 207.80263 * 18 16 14 21 21 H 1.48500 * 109.47099 * 327.79964 * 18 16 14 22 22 C 1.41096 * 119.99993 * 119.87440 * 13 12 11 23 23 C 1.43202 * 119.99941 * 174.49943 * 22 13 12 24 24 N 9.19972 * 174.82825 * 95.42826 * 5 1 2 25 25 C 1.43203 * 119.99944 * 354.23398 * 22 13 12 26 26 N 8.94337 * 158.65444 * 108.09978 * 3 1 2 27 27 N 1.32202 * 122.18254 * 359.49262 * 11 9 8 28 28 C 1.32441 * 121.74617 * 0.25893 * 27 11 9 29 29 C 1.38982 * 119.41760 * 359.97438 * 28 27 11 30 30 H 1.08993 * 109.47093 * 299.99940 * 1 2 3 31 31 H 1.08998 * 109.47047 * 60.00538 * 1 2 3 32 32 H 1.09005 * 109.46485 * 180.02562 * 1 2 3 33 33 H 1.08000 * 125.26526 * 359.96184 * 6 5 3 34 34 H 0.97001 * 120.00201 * 177.63314 * 12 11 9 35 35 H 0.97000 * 120.00100 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.29477 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2022 0.0000 4 8 1.3787 2.2227 -0.0005 5 6 3.5007 1.2788 -0.0006 6 6 4.4087 0.2190 -0.0016 7 7 5.6418 0.6954 -0.0024 8 6 5.6699 2.0189 -0.0014 9 7 6.6803 2.9547 -0.0063 10 1 7.6080 2.6715 -0.0110 11 6 6.3712 4.2682 0.0004 12 7 7.3872 5.1880 0.0001 13 6 8.7062 4.7638 0.0426 14 6 9.1586 4.0086 1.1168 15 1 9.9988 3.3417 0.9923 16 6 8.5211 4.1128 2.3691 17 7 8.7370 3.2132 3.2868 18 14 7.3668 5.5404 2.7139 19 1 5.9945 5.1855 2.2710 20 1 7.3578 5.8290 4.1705 21 1 7.8304 6.7416 1.9741 22 6 9.5893 5.0990 -1.0056 23 6 10.9779 4.7632 -0.9071 24 7 12.0799 4.4959 -0.8275 25 6 9.0958 5.7699 -2.1705 26 7 8.7061 6.3005 -3.0942 27 7 5.1207 4.6972 0.0018 28 6 4.0961 3.8581 0.0017 29 6 4.3350 2.4890 -0.0004 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 4.1447 -0.8282 -0.0016 34 1 7.1834 6.1359 -0.0298 35 1 8.2979 3.2846 4.1488 36 1 3.0837 4.2344 0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:05 Heat of formation + Delta-G solvation = 82.959055 kcal Electronic energy + Delta-G solvation = -27808.240987 eV Core-core repulsion = 23680.582719 eV Total energy + Delta-G solvation = -4127.658267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.06221 -40.18552 -39.34312 -37.44129 -36.21192 -35.73861 -35.17162 -34.62640 -34.46705 -31.65077 -29.99416 -28.90359 -27.89617 -27.16887 -24.88471 -23.68107 -22.23585 -21.78057 -20.46950 -19.88445 -18.49080 -18.30127 -17.88023 -17.32990 -17.03957 -16.88468 -16.24391 -16.19988 -15.61843 -15.52898 -15.01198 -14.03606 -13.79599 -13.68575 -13.35287 -13.23703 -13.16747 -13.00836 -12.79616 -12.78948 -12.23735 -12.17897 -12.00986 -11.96493 -11.93608 -11.61228 -11.41546 -11.36782 -11.03076 -10.63766 -10.59655 -10.50425 -10.29277 -9.90084 -9.27928 -8.85180 -8.30409 -8.17842 -7.61056 -6.01108 0.20951 1.16748 1.46510 1.93036 2.36850 2.44729 2.45354 2.55925 2.89725 2.98515 3.03346 3.41813 3.59089 3.66911 3.70817 3.71740 3.89389 4.17439 4.61004 4.66783 4.77055 4.97643 5.00344 5.12185 5.18476 5.28880 5.39298 5.55807 5.59321 5.75170 5.84819 5.97363 6.05579 6.48267 6.55870 6.61548 6.66299 6.88594 6.93909 7.02325 7.21611 7.33903 7.74175 8.04900 8.18467 8.46932 8.65401 8.70034 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.003664 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.512631 B = 7639.122146 C = 8032.878222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.541 3.459 4 O -0.534 6.534 5 C -0.260 4.260 6 C 0.144 3.856 7 N -0.536 5.536 8 C 0.311 3.689 9 N -0.542 5.542 10 H 0.437 0.563 11 C 0.644 3.356 12 N -0.640 5.640 13 C 0.290 3.710 14 C -0.355 4.355 15 H 0.137 0.863 16 C 0.058 3.942 17 N -0.695 5.695 18 Si 0.904 3.096 19 H -0.241 1.241 20 H -0.269 1.269 21 H -0.240 1.240 22 C -0.267 4.267 23 C 0.316 3.684 24 N -0.503 5.503 25 C 0.296 3.704 26 N -0.504 5.504 27 N -0.559 5.559 28 C 0.285 3.715 29 C -0.218 4.218 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.175 0.825 34 H 0.434 0.566 35 H 0.314 0.686 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -2.815 3.527 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.391 3.609 4 O -0.426 6.426 5 C -0.269 4.269 6 C -0.010 4.010 7 N -0.256 5.256 8 C 0.069 3.931 9 N -0.157 5.157 10 H 0.282 0.718 11 C 0.291 3.709 12 N -0.275 5.275 13 C 0.190 3.810 14 C -0.382 4.382 15 H 0.154 0.846 16 C -0.177 4.177 17 N -0.311 5.311 18 Si 0.726 3.274 19 H -0.165 1.165 20 H -0.195 1.195 21 H -0.163 1.163 22 C -0.284 4.284 23 C 0.007 3.993 24 N -0.183 5.183 25 C -0.013 4.013 26 N -0.185 5.185 27 N -0.285 5.285 28 C 0.122 3.878 29 C -0.229 4.229 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.192 0.808 34 H 0.278 0.722 35 H 0.127 0.873 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.193 -2.126 2.481 10.704 hybrid contribution -1.087 0.329 0.756 1.364 sum -11.280 -1.797 3.237 11.872 Atomic orbital electron populations 1.22793 0.77646 1.03095 1.02096 1.86170 1.22546 1.33374 1.85071 1.20037 0.87953 0.80827 0.72129 1.90797 1.67098 1.35880 1.48832 1.19734 0.88554 0.92721 1.25923 1.23060 0.86371 0.98271 0.93306 1.68900 1.25412 1.05448 1.25822 1.18630 0.84381 0.90169 0.99947 1.41821 1.12702 1.03293 1.57885 0.71844 1.18501 0.88050 0.78632 0.85681 1.41952 1.02853 1.08870 1.73785 1.17020 0.79573 0.91290 0.93147 1.20347 1.11703 1.14985 0.91140 0.84592 1.26842 0.96953 0.98363 0.95568 1.69329 1.28213 1.28105 1.05491 0.86284 0.80465 0.80549 0.80132 1.16543 1.19472 1.16284 1.12557 0.86064 1.33088 0.96688 1.24486 0.91061 0.91398 0.92404 1.81163 1.12013 1.15606 1.09561 1.25069 0.93049 0.91398 0.91765 1.81077 1.08726 1.16754 1.11934 1.68320 0.94989 1.35980 1.29174 1.22813 0.97407 0.88146 0.79418 1.20097 0.93180 0.93700 1.15953 0.92511 0.92490 0.88498 0.80766 0.72233 0.87348 0.79862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.45 101.05 1.06 1.42 16 2 O -0.35 -4.66 10.34 -41.10 -0.43 -5.09 16 3 C 0.54 8.43 7.90 33.89 0.27 8.70 16 4 O -0.53 -9.11 16.29 -19.41 -0.32 -9.43 16 5 C -0.26 -4.22 6.39 -102.70 -0.66 -4.88 16 6 C 0.14 2.23 11.73 -16.90 -0.20 2.03 16 7 N -0.54 -9.43 11.03 -11.71 -0.13 -9.56 16 8 C 0.31 5.38 8.49 -155.36 -1.32 4.06 16 9 N -0.54 -8.73 5.02 -12.85 -0.06 -8.79 16 10 H 0.44 6.99 6.28 -40.82 -0.26 6.74 16 11 C 0.64 9.93 5.78 -321.89 -1.86 8.07 16 12 N -0.64 -9.47 2.22 -11.26 -0.02 -9.49 16 13 C 0.29 4.68 4.58 -83.47 -0.38 4.30 16 14 C -0.35 -6.05 7.13 -38.33 -0.27 -6.32 16 15 H 0.14 2.54 7.43 -52.49 -0.39 2.15 16 16 C 0.06 0.97 5.26 -17.19 -0.09 0.88 16 17 N -0.70 -12.39 13.90 55.60 0.77 -11.61 16 18 Si 0.90 13.44 24.37 -169.99 -4.14 9.30 16 19 H -0.24 -3.64 5.67 56.52 0.32 -3.32 16 20 H -0.27 -4.09 7.11 56.52 0.40 -3.69 16 21 H -0.24 -3.36 6.81 56.52 0.38 -2.98 16 22 C -0.27 -4.71 5.88 -104.96 -0.62 -5.33 16 23 C 0.32 6.17 14.02 -22.45 -0.31 5.85 16 24 N -0.50 -10.59 18.54 41.87 0.78 -9.81 16 25 C 0.30 5.54 14.82 -22.53 -0.33 5.21 16 26 N -0.50 -10.14 18.53 41.77 0.77 -9.37 16 27 N -0.56 -8.44 9.72 -13.64 -0.13 -8.57 16 28 C 0.28 4.26 11.16 -17.01 -0.19 4.07 16 29 C -0.22 -3.63 6.35 -104.82 -0.67 -4.30 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.43 5.78 8.02 -40.82 -0.33 5.45 16 35 H 0.31 5.04 8.28 -40.82 -0.34 4.70 16 36 H 0.18 2.39 7.72 -52.48 -0.41 1.98 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -24.68 339.67 -5.67 -30.35 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -2.30 Total: 13.18 kcal Atomic # 6 Polarization: 29.35 SS G_CDS: -5.58 Total: 23.77 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: 1.97 Total: -67.21 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.74 Total: -14.51 kcal Atomic # 14 Polarization: 13.44 SS G_CDS: -4.14 Total: 9.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -24.68 -5.67 -30.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.307 kcal (2) G-P(sol) polarization free energy of solvation -24.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds