Wall clock time and date at job start Tue Mar 31 2020 20:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.34923 * 116.99774 * 2 1 4 4 O 1.21682 * 119.99863 * 359.97438 * 3 2 1 5 5 C 1.46124 * 120.00371 * 180.02562 * 3 2 1 6 6 C 1.39552 * 127.57990 * 0.02562 * 5 3 2 7 7 N 1.32197 * 109.46353 * 179.97438 * 6 5 3 8 8 C 1.32376 * 112.34016 * 0.02562 * 7 6 5 9 9 N 1.37721 * 134.02392 * 180.27326 * 8 7 6 10 10 H 0.96998 * 120.21739 * 359.93971 * 9 8 7 11 11 C 1.34938 * 119.56040 * 180.18623 * 9 8 7 12 12 N 1.37057 * 118.90891 * 179.77528 * 11 9 8 13 13 C 1.38622 * 120.00015 * 357.63019 * 12 11 9 14 14 C 1.38878 * 120.00116 * 299.88212 * 13 12 11 15 15 H 1.07994 * 120.00521 * 154.29406 * 14 13 12 16 16 C 1.40912 * 119.99513 * 334.29302 * 14 13 12 17 17 N 1.30301 * 119.99684 * 164.88469 * 16 14 13 18 18 Si 1.86800 * 120.00291 * 344.88005 * 16 14 13 19 19 H 1.48497 * 109.47192 * 87.79855 * 18 16 14 20 20 H 1.48502 * 109.46892 * 207.80263 * 18 16 14 21 21 H 1.48500 * 109.47099 * 327.79964 * 18 16 14 22 22 C 1.41096 * 119.99993 * 119.87440 * 13 12 11 23 23 C 1.43202 * 119.99941 * 174.49943 * 22 13 12 24 24 N 9.19972 * 174.82825 * 95.42826 * 5 1 2 25 25 C 1.43203 * 119.99944 * 354.23398 * 22 13 12 26 26 N 8.94337 * 158.65444 * 108.09978 * 3 1 2 27 27 N 1.32202 * 122.18254 * 359.49262 * 11 9 8 28 28 C 1.32441 * 121.74617 * 0.25893 * 27 11 9 29 29 C 1.38982 * 119.41760 * 359.97438 * 28 27 11 30 30 H 1.08993 * 109.47093 * 299.99940 * 1 2 3 31 31 H 1.08998 * 109.47047 * 60.00538 * 1 2 3 32 32 H 1.09005 * 109.46485 * 180.02562 * 1 2 3 33 33 H 1.08000 * 125.26526 * 359.96184 * 6 5 3 34 34 H 0.97001 * 120.00201 * 177.63314 * 12 11 9 35 35 H 0.97000 * 120.00100 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.29477 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2022 0.0000 4 8 1.3787 2.2227 -0.0005 5 6 3.5007 1.2788 -0.0006 6 6 4.4087 0.2190 -0.0016 7 7 5.6418 0.6954 -0.0024 8 6 5.6699 2.0189 -0.0014 9 7 6.6803 2.9547 -0.0063 10 1 7.6080 2.6715 -0.0110 11 6 6.3712 4.2682 0.0004 12 7 7.3872 5.1880 0.0001 13 6 8.7062 4.7638 0.0426 14 6 9.1586 4.0086 1.1168 15 1 9.9988 3.3417 0.9923 16 6 8.5211 4.1128 2.3691 17 7 8.7370 3.2132 3.2868 18 14 7.3668 5.5404 2.7139 19 1 5.9945 5.1855 2.2710 20 1 7.3578 5.8290 4.1705 21 1 7.8304 6.7416 1.9741 22 6 9.5893 5.0990 -1.0056 23 6 10.9779 4.7632 -0.9071 24 7 12.0799 4.4959 -0.8275 25 6 9.0958 5.7699 -2.1705 26 7 8.7061 6.3005 -3.0942 27 7 5.1207 4.6972 0.0018 28 6 4.0961 3.8581 0.0017 29 6 4.3350 2.4890 -0.0004 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 4.1447 -0.8282 -0.0016 34 1 7.1834 6.1359 -0.0298 35 1 8.2979 3.2846 4.1488 36 1 3.0837 4.2344 0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:05 Heat of formation + Delta-G solvation = 71.082196 kcal Electronic energy + Delta-G solvation = -27808.756006 eV Core-core repulsion = 23680.582719 eV Total energy + Delta-G solvation = -4128.173286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.30663 -41.34792 -40.55935 -38.76774 -37.34235 -37.20557 -36.73198 -35.89730 -35.80479 -33.02325 -31.20936 -30.09930 -29.33372 -28.10276 -26.12969 -24.87483 -23.52014 -23.06769 -21.67219 -21.24933 -19.76466 -19.63911 -19.11615 -18.62326 -18.36219 -18.06130 -17.45570 -17.28470 -16.86953 -16.70682 -16.22336 -15.17087 -15.10455 -14.94859 -14.71266 -14.65404 -14.37358 -14.27937 -14.04109 -13.98391 -13.68602 -13.59858 -13.50176 -13.27372 -12.99805 -12.93045 -12.85137 -12.70506 -12.33598 -11.81929 -11.70112 -11.60583 -11.51094 -11.18895 -10.54994 -10.22537 -9.63252 -9.47199 -8.86143 -7.47149 -1.01281 -0.12870 0.16126 0.68205 1.12622 1.24423 1.25296 1.38029 1.61352 1.80610 1.90628 1.95666 2.11866 2.26826 2.36835 2.43598 2.50961 2.96089 3.15760 3.38120 3.51344 3.57719 3.85733 4.09598 4.17892 4.32788 4.43345 4.43709 4.44281 4.56847 4.68332 4.76627 4.92609 5.15554 5.26872 5.39653 5.50950 5.51604 5.62540 5.77981 5.91998 5.99782 6.49426 6.85935 6.97054 6.99686 7.16731 7.34193 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.003664 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.512631 B = 7639.122146 C = 8032.878222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.543 3.457 4 O -0.554 6.554 5 C -0.270 4.270 6 C 0.143 3.857 7 N -0.559 5.559 8 C 0.294 3.706 9 N -0.543 5.543 10 H 0.435 0.565 11 C 0.643 3.357 12 N -0.634 5.634 13 C 0.309 3.691 14 C -0.349 4.349 15 H 0.118 0.882 16 C 0.042 3.958 17 N -0.717 5.717 18 Si 0.933 3.067 19 H -0.242 1.242 20 H -0.270 1.270 21 H -0.222 1.222 22 C -0.270 4.270 23 C 0.325 3.675 24 N -0.535 5.535 25 C 0.309 3.691 26 N -0.528 5.528 27 N -0.554 5.554 28 C 0.292 3.708 29 C -0.233 4.233 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.132 0.868 33 H 0.203 0.797 34 H 0.444 0.556 35 H 0.322 0.678 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.669 -2.686 3.977 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.393 3.607 4 O -0.447 6.447 5 C -0.279 4.279 6 C -0.010 4.010 7 N -0.280 5.280 8 C 0.052 3.948 9 N -0.158 5.158 10 H 0.279 0.721 11 C 0.291 3.709 12 N -0.270 5.270 13 C 0.208 3.792 14 C -0.376 4.376 15 H 0.136 0.864 16 C -0.191 4.191 17 N -0.334 5.334 18 Si 0.752 3.248 19 H -0.166 1.166 20 H -0.196 1.196 21 H -0.144 1.144 22 C -0.288 4.288 23 C 0.016 3.984 24 N -0.217 5.217 25 C 0.001 3.999 26 N -0.210 5.210 27 N -0.279 5.279 28 C 0.129 3.871 29 C -0.244 4.244 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.220 0.780 34 H 0.289 0.711 35 H 0.135 0.865 36 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.918 -2.006 2.926 12.435 hybrid contribution -0.626 0.162 0.689 0.944 sum -12.544 -1.844 3.615 13.184 Atomic orbital electron populations 1.23141 0.75591 1.05499 1.02159 1.86157 1.24516 1.31912 1.84479 1.19965 0.87735 0.81269 0.71714 1.90777 1.67447 1.36643 1.49851 1.19939 0.89213 0.92820 1.25929 1.23511 0.85562 0.99484 0.92449 1.68888 1.26587 1.05882 1.26629 1.18813 0.84923 0.90373 1.00715 1.41814 1.12479 1.03472 1.57996 0.72098 1.18593 0.88308 0.78435 0.85601 1.41831 1.02135 1.09317 1.73749 1.16705 0.79894 0.90451 0.92146 1.20290 1.11080 1.14477 0.91776 0.86384 1.27298 0.97339 0.99415 0.95052 1.69330 1.28840 1.29055 1.06168 0.85858 0.79259 0.79486 0.80202 1.16553 1.19581 1.14448 1.12458 0.85481 1.33934 0.96950 1.24713 0.91285 0.90743 0.91631 1.81162 1.12962 1.17019 1.10563 1.25068 0.92469 0.90895 0.91498 1.81089 1.09490 1.17829 1.12551 1.68381 0.94756 1.35763 1.28980 1.23106 0.98110 0.87600 0.78259 1.20334 0.93038 0.94581 1.16469 0.92449 0.92454 0.84961 0.78046 0.71063 0.86454 0.77918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.45 113.37 1.18 1.68 16 2 O -0.35 -8.60 10.34 -58.39 -0.60 -9.21 16 3 C 0.54 16.15 7.90 69.87 0.55 16.70 16 4 O -0.55 -18.11 16.29 19.24 0.31 -17.80 16 5 C -0.27 -8.46 6.39 -18.62 -0.12 -8.58 16 6 C 0.14 4.28 11.73 84.96 1.00 5.28 16 7 N -0.56 -19.37 11.03 -190.97 -2.11 -21.48 16 8 C 0.29 9.96 8.49 134.10 1.14 11.10 16 9 N -0.54 -17.08 5.02 -194.56 -0.98 -18.06 16 10 H 0.43 13.80 6.28 -92.71 -0.58 13.22 16 11 C 0.64 18.88 5.78 261.17 1.51 20.39 16 12 N -0.63 -17.67 2.22 -189.54 -0.42 -18.09 16 13 C 0.31 9.62 4.58 38.92 0.18 9.80 16 14 C -0.35 -11.68 7.13 23.08 0.16 -11.51 16 15 H 0.12 4.43 7.43 -2.91 -0.02 4.41 16 16 C 0.04 1.38 5.26 85.57 0.45 1.83 16 17 N -0.72 -25.05 13.90 21.99 0.31 -24.74 16 18 Si 0.93 25.55 24.37 68.60 1.67 27.23 16 19 H -0.24 -6.67 5.67 99.48 0.56 -6.10 16 20 H -0.27 -7.54 7.11 99.48 0.71 -6.83 16 21 H -0.22 -5.49 6.81 99.48 0.68 -4.81 16 22 C -0.27 -9.32 5.88 -20.08 -0.12 -9.44 16 23 C 0.32 12.58 14.02 88.32 1.24 13.82 16 24 N -0.54 -22.60 18.54 19.01 0.35 -22.25 16 25 C 0.31 11.25 14.82 88.35 1.31 12.56 16 26 N -0.53 -20.73 18.53 18.98 0.35 -20.38 16 27 N -0.55 -15.64 9.72 -197.06 -1.92 -17.55 16 28 C 0.29 8.24 11.16 84.78 0.95 9.19 16 29 C -0.23 -7.50 6.35 -20.00 -0.13 -7.63 16 30 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 31 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 32 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.20 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.44 10.75 8.02 -92.71 -0.74 10.01 16 35 H 0.32 10.08 8.28 -92.71 -0.77 9.31 16 36 H 0.20 4.87 7.72 -2.91 -0.02 4.85 16 Total: -1.00 -51.39 339.67 6.00 -45.38 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.27 Total: 31.77 kcal Atomic # 6 Polarization: 55.88 SS G_CDS: 9.30 Total: 65.18 kcal Atomic # 7 Polarization: -138.14 SS G_CDS: -4.41 Total: -142.55 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.29 Total: -27.01 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: 1.67 Total: 27.23 kcal Total: -51.39 6.00 -45.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.466 kcal (2) G-P(sol) polarization free energy of solvation -51.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds